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Gene: Zfp239 (zinc finger protein 239) Rattus norvegicus

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Symbol:

Zfp239

Name:

zinc finger protein 239

RGD ID:

6502210

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF239 (zinc finger protein 239); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; gentamycin; paracetamol.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

LOC100909657; uncharacterized LOC100909657

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF239 (zinc finger protein 239)	HGNC	NCBI
Mus musculus (house mouse):	Zfp239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf239 (zinc finger protein 239)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zfp239 (zinc finger protein 239)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp239 (zinc finger protein 239)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF239 (zinc finger protein 239)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	ZNF239 (zinc finger protein 239)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	znf33b	Alliance	DIOPT (Ensembl Compara\|OMA)
Xenopus tropicalis (tropical clawed frog):	znf24l	Alliance	DIOPT (Ensembl Compara\|OMA)
Xenopus tropicalis (tropical clawed frog):	znf24l	Alliance	DIOPT (Ensembl Compara\|OMA)
Xenopus tropicalis (tropical clawed frog):	LOC101733897	Alliance	DIOPT (Ensembl Compara\|OMA)
Xenopus tropicalis (tropical clawed frog):	LOC105947722	Alliance	DIOPT (Ensembl Compara\|OMA)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	152,701,818 - 152,711,698 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	152,693,531 - 152,714,903 (+)	Ensembl				GRCr8
mRatBN7.2	4	151,029,431 - 151,039,283 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	151,029,405 - 151,039,529 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	157,291,705 - 157,299,214 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	153,075,626 - 153,083,135 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	151,698,638 - 151,706,147 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	154,907,770 - 154,915,278 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	152,556,864 - 152,564,372 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	153,039,977 - 153,047,485 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	152,382,692 - 152,390,200 (+)	NCBI		F344_StmMcwi
Rnor_6.0	4	149,902,278 - 149,909,841 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	149,908,375 - 149,908,980 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	215,831,518 - 215,838,957 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	4	139,905,074 - 139,912,552 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

actinomycin D (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

diallyl trisulfide (ISO)

diquat (ISO)

esketamine (ISO)

folic acid (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

iron dichloride (ISO)

metformin (ISO)

methylmercury chloride (ISO)

monosodium L-glutamate (ISO)

morphine (ISO)

nickel sulfate (ISO)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

streptozocin (ISO)

temozolomide (ISO)

thioacetamide (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vitamin E (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11278819

Genomics

Comparative Map Data

Zfp239
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	152,701,818 - 152,711,698 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	152,693,531 - 152,714,903 (+)	Ensembl				GRCr8
mRatBN7.2	4	151,029,431 - 151,039,283 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	151,029,405 - 151,039,529 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	157,291,705 - 157,299,214 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	153,075,626 - 153,083,135 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	151,698,638 - 151,706,147 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	154,907,770 - 154,915,278 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	152,556,864 - 152,564,372 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	153,039,977 - 153,047,485 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	152,382,692 - 152,390,200 (+)	NCBI		F344_StmMcwi
Rnor_6.0	4	149,902,278 - 149,909,841 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	149,908,375 - 149,908,980 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	215,831,518 - 215,838,957 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	4	139,905,074 - 139,912,552 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

ZNF239
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	43,556,344 - 43,574,616 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	43,554,516 - 43,574,623 (-)	Ensembl			hg38	GRCh38
GRCh37	10	44,051,792 - 44,070,064 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	43,371,798 - 43,390,072 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	43,371,800 - 43,383,913	NCBI
Celera	10	40,055,429 - 40,073,702 (-)	NCBI		Celera
Cytogenetic Map	10	q11.21	NCBI
HuRef	10	40,579,145 - 40,597,405 (-)	NCBI		HuRef
CHM1_1	10	44,091,430 - 44,109,701 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	44,437,270 - 44,455,539 (-)	NCBI		T2T-CHM13v2.0

Zfp239
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	117,838,907 - 117,849,727 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	117,839,061 - 117,850,252 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	117,862,024 - 117,872,766 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	117,862,100 - 117,873,291 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	117,813,095 - 117,822,784 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	117,828,696 - 117,838,385 (+)	NCBI		MGSCv36	mm8
Celera	6	119,683,153 - 119,692,842 (+)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	55.62	NCBI

Znf239
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955546	1,451,303 - 1,466,845 (-)	Ensembl
ChiLan1.0	NW_004955546	1,451,303 - 1,466,845 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF239
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	56,276,380 - 56,297,777 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	56,276,463 - 56,303,105 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	40,539,647 - 40,557,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	43,721,112 - 43,739,279 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	43,720,119 - 43,722,843 (-)	Ensembl			panPan2	panpan1.1

ZNF239
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	3,529,093 - 3,542,049 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	3,540,074 - 3,541,294 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	3,762,024 - 3,806,763 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	3,707,539 - 3,752,178 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	3,707,313 - 3,735,369 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	3,504,530 - 3,549,498 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	3,546,693 - 3,592,151 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	3,681,554 - 3,726,365 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf239
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	83,383,250 - 83,413,184 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936617	3,378,718 - 3,380,237 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936617	3,377,223 - 3,400,709 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF239
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	92,189,896 - 92,204,987 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	92,189,825 - 92,202,641 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	100,611,433 - 100,624,183 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF239
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	39,225,181 - 39,236,129 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	39,225,544 - 39,226,920 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	47,226,179 - 47,239,227 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf239
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624922	646,676 - 668,862 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf239
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	28,864,434 - 28,871,659 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp239
68 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	25
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000019504
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	87	59	6	351	187	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019504 ⟹ ENSRNOP00000066855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	149,908,375 - 149,908,980 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094018 ⟹ ENSRNOP00000095324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	152,694,855 - 152,712,099 (+)	Ensembl
mRatBN7.2 Ensembl	4	151,031,777 - 151,036,928 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098706 ⟹ ENSRNOP00000094455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	152,695,798 - 152,712,099 (+)	Ensembl
mRatBN7.2 Ensembl	4	151,029,405 - 151,039,529 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100866 ⟹ ENSRNOP00000077005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	152,703,770 - 152,712,099 (+)	Ensembl
mRatBN7.2 Ensembl	4	151,031,777 - 151,039,529 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102805 ⟹ ENSRNOP00000079035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	152,694,824 - 152,712,099 (+)	Ensembl
mRatBN7.2 Ensembl	4	151,031,777 - 151,036,928 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102918 ⟹ ENSRNOP00000084607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	152,701,655 - 152,714,903 (+)	Ensembl
mRatBN7.2 Ensembl	4	151,029,499 - 151,039,529 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107415 ⟹ ENSRNOP00000076714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	152,693,531 - 152,713,666 (+)	Ensembl
mRatBN7.2 Ensembl	4	151,032,695 - 151,039,529 (+)	Ensembl

RefSeq Acc Id:

NM_001399753 ⟹ NP_001386682

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,871 - 152,709,328 (+)	NCBI
mRatBN7.2	4	151,029,456 - 151,036,913 (+)	NCBI
Dahl_SR_JrHsd	4	154,907,770 - 154,915,278 (+)	NCBI
Lyon_Normotensive	4	152,556,864 - 152,564,372 (+)	NCBI
Lyon_Hypertensive	4	153,039,977 - 153,047,485 (+)	NCBI
F344_StmMcwi	4	152,382,692 - 152,390,200 (+)	NCBI

RefSeq Acc Id:

XM_017593029 ⟹ XP_017448518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,704,165 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,031,753 - 151,039,283 (+)	NCBI
Rnor_6.0	4	149,902,649 - 149,909,841 (+)	NCBI

Sequence:

show sequence

CTTCTTCGATCGAGTGACTTGGCCCTTTTCCAATGATGATGTTAGTGGACATCAGGAGACCATG
AGAGGCTCCTGAGACCCCTAAGAGACTCGAAGGGTACTAAGGTTTCCGCTGCACAGCGCTTCCC
TCTGCATCCTAGAAACCAGTCAGATTTCTGAGAATAAGGTCTGGCGAGGGATATTGGATAGCCG
TAATACACGCAGTAAGAGAAGGTGTGTAGAACCCAAGAACAGCTACTCCAGAACAGAAATAAGT
TAGTCTGAGGAGATGGGCATGTATGCCAGAACTATCTTTCAAAGAATTCGCCCCTCCCTGAGAA
TATGACCACGCTTCAGGTGACTTGGAGTCTTTTTCTCACCAAAAATGCCTCATCTCTGAGCTAG
ATACAGCTTTTCTTAGAACGAAATAGGAAATCACCATTGAGTAGTTGCCTAGAATGAGGTCGTG
TACCCTGTGGTTTTTCTCTTTGTTTTCAAGCTTTGTTGTGAGTTTGTTATTTTATACAAGGGAA
CGAGAGAATTTGGGACATTAAATTATTATGTATTAGCAAACGGTATCAACAGGTTTGGCATAGG
GTCTGCTAACCCGGAAGTTCCACATTAGTTCTTTCTACACTGCCTTGCCACCATGTGGAGTACT
CCTCGAAACATCCAACCAAACTCTTCTGAAAGGTTCTACCTCCATAGAGCATTTTTGCCCTGTA
GTCTGGAAGTTGACTTGTCCTGTCAGATATTTCACTTGTGTATGTTACCTCTTCATTGTTGAGA
CCAAACTATCCTAGGTAATGAGTTTGTAAGGAGCAAAGATTTTTGTCTGTTCACAGTTCAGTCG
TTGGACCTATGAAACAGAGTTTGGTTCACCTCCTGTGGGAAAGACCTAGATCCCAATATCATCT
TTAAGGGCACATCCCCAGTGACCTAAATTCTTCCTATGAGATCCTACCTCCTAAGGGTTTCACT
TCCTCCTAACCTCAGAGGTGTTAGAGGTTAGAAACAAAGCCTTTGGAAAACTGAGATCGAAACT
GTAGCTGTCGGAGATCATTCAAAGTTAGTATAACGCTAAGTGGGAAAGCACGATCATAAACTGA
ATCTCGTCTTCAAAGAACTCATCTTCTTAGTGAGCAGACATTATGTAACCATCGTGGGTATGAT
GGTTAATCTTGGATTGAGAGATTCCTAGGAATTAGTGAAGTACACTTCTTCCTGAGTCTCTAAG
GGTGTTTCCAGAGAGTATTAGATCATGAGGGCTGTAGCCTCAGGAATGTTTCATTGTGAATCGA
AACTTTGAGACTTGGAAGGTGGCAGAATTGTAGAAGGTGGAGCCTGGGTGGAGGAGGCAGGTCA
CTGGGTTGAAGCTTATCCTTGTGAGTCTTATTTCGCCCTGACTCTTTCCTGCTCTTCTGCCCTC
TTTTATGCCTGACACGAGCTGAACAGCAGGCTTCCCACAATGCCCTACCATGATGGGGACTGAG
ATAACTCTCTCCCTAAGTCGTTCAATTGGGACTTGGTTATAGCTACGAGAAAGCAAGTGTCGTG
TTTAGTAACTGGTGATCATTGTTCGCTGTGAAAGTGAAGGACATGAGGAACATAATTAAACAGC
TGCTGAGTGGCCACAAAGCCATGTCTGAAAAGGTGCATCAAAACCACATGCTGGCTTTTAAAAC
TTTATATTCCTAGCCCTGATGGAAGGAGAACAGAACTCCTCTCTCATTCTCCCGATCTCCGTGC
ACCCAGTGTTCCTGTGAAATACCTCCACATATGTGTAATGCTGTGATTCTAACGGGAAGTAAGA
TGAGTTGCCTAACTAGAGCTTTTATGCTGGGAACTGAACTTACAAGAACCAGGGGTGCTCTTAG
TTTCTGAGTCACCTCACTGGACTCTTGAAGGCCTTTCTCTTGAAGATTCTCCACAGAATTGTGT
TTGACTCTCCTAGGAAACAGAATTTTGCGGTAAGAACATAGGATTCCAGACTAGGAGATTGGAA
AGTCACGAGGACTTAAAGATGAACACGTAATTCTAAAAACATGAACATGTGAGTTTTCATGCCT
GCAGTCTGCTTCCACAACTGGAGAGTCAAACACAATTCTGTGGAGAATCTTCAAGAGAAAGGCC
TTCAAGAGTCTGTCGAGATGACTCAGAAACTAAGAGCACCCCTGGCTCCTGTAAGTTCAGTTCC
TGGCACCCACACAGTGCTTCAGCATCCGTCCCTCCAGTTCGAGGAGCTCCAGTGACCTCTTCCA
CCTCCAGCAGTACCAGGCAGGCATGCTCGGCACAGACACACTTAACACGTGAAATAAAAGTTCT
TAGCACAGGAGAAAGAGAAAAGACTTCAGGCCTTCCCATAGGGGGCTTCTTGGGGGCTAGTTTG
GGAAGAAATGGCCAGTCAGTAACTGGAAGTTGAGTTTGTATTGTGAATCTTCAAGAAGTACACA
AGGATAATTGAAATAGATTGCTGTCAAAAATGGGAAGAAGTGTCTTGCCATATATCCAAAAACC
ACAAATTGTGGTGACTCTTTAAAGTTATCTCACAAATATTGAAAGTGGAAAAAAATATTTATCT
TTGAAATCCCGAGCCAAATGTCCAGACAGGACTCCTCTGAGAGCTTGTGTAAGGAGCCTCGGTG
GGGAAAAGGTCTCTGTAACTGAAGAAGGAGGGAGAGAAAAAGAATAAGGAGTATTGTCATCCCA
TACACCACTGTGCTGAGAACCGTCGTCAGGCTTGCTCCTGATGGAACAGAACTGGCGCCTCCAT
CATTCTCTGCTGAGACAACTTGCCAAAATGTCCGTTCAAAGACTCTTTAGTTTCCTCTGACTGT
AACAATAAAGACGTTTTTAAATGGAGGTCGCCATTAGTCACTTGGAGTCTTCAGAGAGACCACA
CAGAGGAATCCTGTGACTGGTGATTCCGAGGGGATGCTTATCATCAACCCAGATGGTCATCTCT
TCAAGATAATCCCCACGTCAGAACAACTATACCCTCGTGATCGGTGTGGTGAGGACTTCATTCA
GAACTCAGAACTAATGTGTCATCAGAGAGACCACCTAAAAGAAAAAGCCTGCAGGCGAGAGCAT
CGTGGGAGGGGCTTCAGCTGCTCTGAGCTTTGTGGGCGGGGCTTCACAAAGTCTGTTTCCGCAT
CAAGCAGTCCACATGGATGAGAAACCGTACAAATGTGACAAGTGCGGGAAGGGCTTCACCAGGA
GCTCAAGTCTGCTTGTCCATCATTCAGTCCATACAGGTGAGAAACCTTTCAAGTGTGACAGGTG
TGGGAAGGGCTTCAGTCAGAGCTCAAAGCTGCACATCCACCAGAGAGTCCACACTGGAGAGAAG
CCGTATGAGTGTGAGGAGTGTGGTATGAGCTTCAGTCAGCGATCAAACCTGCACATCCACCAAC
GTGTCCACACAGGAGAGAGGCCCTACAAGTGCGGGGAGTGTGGAAAAGGCTTCAGCCAGAGCTC
GAACCTACACATCCACCGGTGCACCCACACAGGAGAGAAGCCGTACCAGTGCTACGAATGCGGG
AAAGGCTTCAGCCAGAGCTCAGACCTTCGAATCCACCTCAGAGTGCACACTGGGGAAAAGCCCT
ACCACTGTGGCAAGTGCGGGAAGGGCTTCAGCCAGAGCTCCAAACTCCTCATCCATCAGAGAGT
CCACACGGGAGAGAAGCCGTATGAATGCAGCAGGTGTGGGAAGGGCTTCAGCCAGAGCTCAAAC
CTCCACATCCACCAGCGGGTTCACAGGAAGGACCTTCACTAAGTAACATGAGCCCCCCTCGGGA
GTTCAGAATACTTTTATTGTAAGAAAAATATTTTTCATGGCTGAGTGTGCATATCAGAGGTAGA
GTGCTTGCCTAACATGTATAAAGCCCTGAGTTTGAGCTCTAGTACCCCACCACAGTTTCCACCT
TAATACTTTGTGCATGTAGGAATGTGTGTTCATGCAGAGAGGGGTACATACATGCATTGTGCTG
GTGTGTGCATGCACGTGTGCACGTGTGTGGAGGTCAGGTGCGCAGATGCTTACCACGGGTTTTT
TTGTTTTGTTTTGTTTTGTTTTTTTTTGAGACTGGAGATCTGTCTGTTAGTCATGGCATGGAAT
GTCACCAAGTAAGCCAGGCCAGAGTCCCAGGATCTATCTGTCTCCACTTCCCACCTCACCATGG
CTAGGATTACAGGTGTGTGCCACCTCACTCTCTTACATGGATTCTGTCTCAAGCTTTCTAGACA
AGAACTTTGCTGACTGAGGCATCTCCGAGGGCCCCAGTTTAATACATTCAACTCTTACCTTTGC
ATTCCTCAAAGGAAAGAAGTAGTAAGGGTTGTTCACATATAGCCCCTCACGGAAGACACCAATC
CTTCATTTACAGCACCCGAGTACCAGCTCTTCTTATGTTATACAAGGAATGGACTGTCCTGGCT
CCTCCCTGGGTAGAGTATATATTGCAATTCTGCTAGTGTTATTCGAAGTATATTCCTCAATTTT
ACCTGCAAGAACTTTGTGTTTTTCCAAGCACAGCATGGTTCCCTTCTCTGAGAAACTGGAATTC
ATGTTTCCTCTGAAATGATGTGCCTTGTTTTTCATATTCCTTTTAAGTCCTAAATAGCCCTCTT
TAACCTA

hide sequence

RefSeq Acc Id:

XM_017593030 ⟹ XP_017448519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,948 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,029,565 - 151,039,283 (+)	NCBI
Rnor_6.0	4	149,902,403 - 149,909,841 (+)	NCBI

Sequence:

show sequence

GCCCCAGGGGCGGGCAGCGGTGTCCTGGTCTAGACGAGAGGGACATCGCTACTCAGAGCCAGGC
TCAGAAGCTGGGAAGGCGCCCTGCGGCTGAGGTCCCTCGAGTTAGCAGCCGCGGTACCCCCAGT
CACACCCGTGAACAAGGCCACCCTAACGGAGGTCCAGAGCAAGCCGCAGCTCTGAAGACATCCT
CCTCTTGCTTGGCCAAGCTCTGGCCTGCGTGGGTCTGAGGACTGAATGAATTCTAAAAACATGA
ACATGTGAGTTTTCATGCCTGCAGTCTGCTTCCACAACTGGAGAGTCAAACACAATTCTGTGGA
GAATCTTCAAGAGAAAGGCCTTCAAGAGTCTGTCGAGATGACTCAGAAACTAAGAGCACCCCTG
GCTCCTGTAAGTTCAGTTCCTGGCACCCACACAGTGCTTCAGCATCCGTCCCTCCAGTTCGAGG
AGCTCCAGTGACCTCTTCCACCTCCAGCAGTACCAGGCAGGCATGCTCGGCACAGACACACTTA
ACACGTGAAATAAAAGTTCTTAGCACAGGAGAAAGAGAAAAGACTTCAGGCCTTCCCATAGGGG
GCTTCTTGGGGGCTAGTTTGGGAAGAAATGGCCAGTCAGTAACTGGAAGTTGAGTTTGTATTGT
GAATCTTCAAGAAGTACACAAGGATAATTGAAATAGATTGCTGTCAAAAATGGGAAGAAGTGTC
TTGCCATATATCCAAAAACCACAAATTGTGGTGACTCTTTAAAGTTATCTCACAAATATTGAAA
GTGGAAAAAAATATTTATCTTTGAAATCCCGAGCCAAATGTCCAGACAGGACTCCTCTGAGAGC
TTGTGTAAGGAGCCTCGGTGGGGAAAAGGTCTCTGTAACTGAAGAAGGAGGGAGAGAAAAAGAA
TAAGGAGTATTGTCATCCCATACACCACTGTGCTGAGAACCGTCGTCAGGCTTGCTCCTGATGG
AACAGAACTGGCGCCTCCATCATTCTCTGCTGAGACAACTTGCCAAAATGTCCGTTCAAAGACT
CTTTAGTTTCCTCTGACTGTAACAATAAAGACGTTTTTAAATGGAGGTCGCCATTAGTCACTTG
GAGTCTTCAGAGAGACCACACAGAGGAATCCTGTGACTGGTGATTCCGAGGGGATGCTTATCAT
CAACCCAGATGGTCATCTCTTCAAGATAATCCCCACGTCAGAACAACTATACCCTCGTGATCGG
TGTGGTGAGGACTTCATTCAGAACTCAGAACTAATGTGTCATCAGAGAGACCACCTAAAAGAAA
AAGCCTGCAGGCGAGAGCATCGTGGGAGGGGCTTCAGCTGCTCTGAGCTTTGTGGGCGGGGCTT
CACAAAGTCTGTTTCCGCATCAAGCAGTCCACATGGATGAGAAACCGTACAAATGTGACAAGTG
CGGGAAGGGCTTCACCAGGAGCTCAAGTCTGCTTGTCCATCATTCAGTCCATACAGGTGAGAAA
CCTTTCAAGTGTGACAGGTGTGGGAAGGGCTTCAGTCAGAGCTCAAAGCTGCACATCCACCAGA
GAGTCCACACTGGAGAGAAGCCGTATGAGTGTGAGGAGTGTGGTATGAGCTTCAGTCAGCGATC
AAACCTGCACATCCACCAACGTGTCCACACAGGAGAGAGGCCCTACAAGTGCGGGGAGTGTGGA
AAAGGCTTCAGCCAGAGCTCGAACCTACACATCCACCGGTGCACCCACACAGGAGAGAAGCCGT
ACCAGTGCTACGAATGCGGGAAAGGCTTCAGCCAGAGCTCAGACCTTCGAATCCACCTCAGAGT
GCACACTGGGGAAAAGCCCTACCACTGTGGCAAGTGCGGGAAGGGCTTCAGCCAGAGCTCCAAA
CTCCTCATCCATCAGAGAGTCCACACGGGAGAGAAGCCGTATGAATGCAGCAGGTGTGGGAAGG
GCTTCAGCCAGAGCTCAAACCTCCACATCCACCAGCGGGTTCACAGGAAGGACCTTCACTAAGT
AACATGAGCCCCCCTCGGGAGTTCAGAATACTTTTATTGTAAGAAAAATATTTTTCATGGCTGA
GTGTGCATATCAGAGGTAGAGTGCTTGCCTAACATGTATAAAGCCCTGAGTTTGAGCTCTAGTA
CCCCACCACAGTTTCCACCTTAATACTTTGTGCATGTAGGAATGTGTGTTCATGCAGAGAGGGG
TACATACATGCATTGTGCTGGTGTGTGCATGCACGTGTGCACGTGTGTGGAGGTCAGGTGCGCA
GATGCTTACCACGGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTTGAGACTGGAGATCTGTC
TGTTAGTCATGGCATGGAATGTCACCAAGTAAGCCAGGCCAGAGTCCCAGGATCTATCTGTCTC
CACTTCCCACCTCACCATGGCTAGGATTACAGGTGTGTGCCACCTCACTCTCTTACATGGATTC
TGTCTCAAGCTTTCTAGACAAGAACTTTGCTGACTGAGGCATCTCCGAGGGCCCCAGTTTAATA
CATTCAACTCTTACCTTTGCATTCCTCAAAGGAAAGAAGTAGTAAGGGTTGTTCACATATAGCC
CCTCACGGAAGACACCAATCCTTCATTTACAGCACCCGAGTACCAGCTCTTCTTATGTTATACA
AGGAATGGACTGTCCTGGCTCCTCCCTGGGTAGAGTATATATTGCAATTCTGCTAGTGTTATTC
GAAGTATATTCCTCAATTTTACCTGCAAGAACTTTGTGTTTTTCCAAGCACAGCATGGTTCCCT
TCTCTGAGAAACTGGAATTCATGTTTCCTCTGAAATGATGTGCCTTGTTTTTCATATTCCTTTT
AAGTCCTAAATAGCCCTCTTTAACCTA

hide sequence

RefSeq Acc Id:

XM_039108784 ⟹ XP_038964712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,704,222 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,032,416 - 151,039,283 (+)	NCBI

RefSeq Acc Id:

XM_039108785 ⟹ XP_038964713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,705,231 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,032,839 - 151,039,283 (+)	NCBI

RefSeq Acc Id:

XM_039108786 ⟹ XP_038964714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,962 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,030,125 - 151,039,283 (+)	NCBI

RefSeq Acc Id:

XM_039108787 ⟹ XP_038964715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,818 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,029,431 - 151,039,283 (+)	NCBI

RefSeq Acc Id:

XM_039108788 ⟹ XP_038964716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,887 - 152,711,698 (+)	NCBI
mRatBN7.2	4	151,029,478 - 151,039,283 (+)	NCBI

RefSeq Acc Id:

XM_063285339 ⟹ XP_063141409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,954 - 152,711,698 (+)	NCBI

RefSeq Acc Id:

XM_063285340 ⟹ XP_063141410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,704,830 - 152,711,698 (+)	NCBI

RefSeq Acc Id:

XM_063285341 ⟹ XP_063141411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,701,887 - 152,711,698 (+)	NCBI

RefSeq Acc Id:

XM_063285342 ⟹ XP_063141412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,704,180 - 152,711,698 (+)	NCBI

RefSeq Acc Id:

XM_063285343 ⟹ XP_063141413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,704,186 - 152,711,698 (+)	NCBI

RefSeq Acc Id:

XM_063285344 ⟹ XP_063141414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,704,830 - 152,711,698 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001386682	(Get FASTA)	NCBI Sequence Viewer
	XP_017448518	(Get FASTA)	NCBI Sequence Viewer
	XP_017448519	(Get FASTA)	NCBI Sequence Viewer
	XP_038964712	(Get FASTA)	NCBI Sequence Viewer
	XP_038964713	(Get FASTA)	NCBI Sequence Viewer
	XP_038964714	(Get FASTA)	NCBI Sequence Viewer
	XP_038964715	(Get FASTA)	NCBI Sequence Viewer
	XP_038964716	(Get FASTA)	NCBI Sequence Viewer
	XP_063141409	(Get FASTA)	NCBI Sequence Viewer
	XP_063141410	(Get FASTA)	NCBI Sequence Viewer
	XP_063141411	(Get FASTA)	NCBI Sequence Viewer
	XP_063141412	(Get FASTA)	NCBI Sequence Viewer
	XP_063141413	(Get FASTA)	NCBI Sequence Viewer
	XP_063141414	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02096	(Get FASTA)	NCBI Sequence Viewer
	EDM02097	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000076714.1
	ENSRNOP00000077005
	ENSRNOP00000077005.1
	ENSRNOP00000079035.1
	ENSRNOP00000084607
	ENSRNOP00000084607.1
	ENSRNOP00000094455
	ENSRNOP00000094455.1
	ENSRNOP00000095324
	ENSRNOP00000095324.1

RefSeq Acc Id:	XP_017448519 ⟸ XM_017593030
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEKPYKCDKCGKGFTRSSSLLVHHSVHTGEKPFKCDRCGKGFSQSSKLHIHQRVHTGEKPYEC EECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGFSQSSNLHIHRCTHTGEKPYQCYECGKGFS QSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIHQRVHTGEKPYECSRCGKGFSQSSNLHIH QRVHRKDLH hide sequence

RefSeq Acc Id:	XP_017448518 ⟸ XM_017593029
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEKPYKCDKCGKGFTRSSSLLVHHSVHTGEKPFKCDRCGKGFSQSSKLHIHQRVHTGEKPYEC EECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGFSQSSNLHIHRCTHTGEKPYQCYECGKGFS QSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIHQRVHTGEKPYECSRCGKGFSQSSNLHIH QRVHRKDLH hide sequence

Ensembl Acc Id:

ENSRNOP00000066855 ⟸ ENSRNOT00000019504

RefSeq Acc Id:	XP_038964715 ⟸ XM_039108787
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964716 ⟸ XM_039108788
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964714 ⟸ XM_039108786
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964712 ⟸ XM_039108784
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964713 ⟸ XM_039108785
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095324 ⟸ ENSRNOT00000094018

Ensembl Acc Id:

ENSRNOP00000077005 ⟸ ENSRNOT00000100866

Ensembl Acc Id:

ENSRNOP00000084607 ⟸ ENSRNOT00000102918

Ensembl Acc Id:

ENSRNOP00000094455 ⟸ ENSRNOT00000098706

Ensembl Acc Id:

ENSRNOP00000079035 ⟸ ENSRNOT00000102805

Ensembl Acc Id:

ENSRNOP00000076714 ⟸ ENSRNOT00000107415

RefSeq Acc Id:	NP_001386682 ⟸ NM_001399753
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141411 ⟸ XM_063285341
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141409 ⟸ XM_063285339
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141412 ⟸ XM_063285342
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141413 ⟸ XM_063285343
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141410 ⟸ XM_063285340
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141414 ⟸ XM_063285344
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AN75 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RBC3-F1-model_v2	AlphaFold	M0RBC3	1-201	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:6502210	AgrOrtholog
BioCyc Gene	G2FUF-43249	BioCyc
Ensembl Genes	ENSRNOG00000014552	Ensembl
	ENSRNOG00000062429	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000094018	ENTREZGENE
	ENSRNOT00000094018.2	UniProtKB/TrEMBL
	ENSRNOT00000098706	ENTREZGENE
	ENSRNOT00000098706.2	UniProtKB/TrEMBL
	ENSRNOT00000100866	ENTREZGENE
	ENSRNOT00000100866.2	UniProtKB/TrEMBL
	ENSRNOT00000102805.2	UniProtKB/TrEMBL
	ENSRNOT00000102918	ENTREZGENE
	ENSRNOT00000102918.2	UniProtKB/TrEMBL
	ENSRNOT00000107415.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	LOC100909657	ENTREZGENE
PANTHER	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 235	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp239	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014552	RatGTEx
	ENSRNOG00000062429	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6AN75	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Zfp239	zinc finger protein 239	Zfp239	zinc finger protein 239	Data merged from RGD:149736227	737654	PROVISIONAL
2021-08-09	Zfp239	zinc finger protein 239			Symbol and Name status set to provisional	45752	PROVISIONAL
2020-08-13	Zfp239	zinc finger protein 239	LOC100909657	uncharacterized LOC100909657	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100909657	uncharacterized LOC100909657			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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