Advanced Search (OLGA)

Gene: Ric8b (RIC8 guanine nucleotide exchange factor B) Rattus norvegicus

Analyze

Symbol:

Ric8b

Name:

RIC8 guanine nucleotide exchange factor B

RGD ID:

631419

Description:

Predicted to enable G-protein alpha-subunit binding activity; guanyl-nucleotide exchange factor activity; and protein folding chaperone. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway. Predicted to be located in cytosol. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RIC8B (RIC8 guanine nucleotide exchange factor B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

chaperone Ric-8B; heterotrimeric G protein guanine nucleotide exchange factor-like protein Ric-8B; resistance to inhibitors of cholinesterase 8 homolog B; resistance to inhibitors of cholinesterase 8 homolog B (C. elegans); resistance to inhibitors of cholinesterase 8B; resistance to inhibitors of cholinesterase 8B (C. elegans); synembryn-B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RIC8B (RIC8 guanine nucleotide exchange factor B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Ric8b (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ric8b (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RIC8B (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RIC8B (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ric8b (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RIC8B (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RIC8B (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ric8b (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ric8b (RIC8 guanine nucleotide exchange factor B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ric8b (RIC8 guanine nucleotide exchange factor B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RIC8B (RIC8 guanine nucleotide exchange factor B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RIC8B (RIC8 guanine nucleotide exchange factor B)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ric8b (RIC8 guanine nucleotide exchange factor B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ric-8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ric8a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ric8a	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ric8b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ric8b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	20,636,337 - 20,730,066 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	20,636,687 - 20,730,178 (-)	Ensembl				GRCr8
mRatBN7.2	7	18,746,716 - 18,843,264 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	18,748,641 - 18,842,372 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	20,710,861 - 20,803,310 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	22,873,544 - 22,965,991 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	22,650,520 - 22,742,965 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	25,919,266 - 26,015,506 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	25,919,867 - 26,012,344 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	26,049,060 - 26,145,319 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	20,871,670 - 20,965,053 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	15,965,495 - 16,057,891 (-)	NCBI		Celera
RGSC_v3.1	7	20,891,940 - 20,985,324 (-)	NCBI
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

crocidolite asbestos (ISO)

dibutyl phthalate (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

rifampicin (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IBA,IEA,ISO,ISS)

protein folding (IEA)

regulation of G protein-coupled receptor signaling pathway (ISO)

sensory perception of smell (IEA,ISO,ISS)

Cellular Component

cell cortex (IEA)

cytoplasm (IBA,IEA)

cytosol (IEA,ISO)

plasma membrane (IBA,IEA,ISO,ISS)

Molecular Function

G-protein alpha-subunit binding (IBA,IEA,ISO,ISS)

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO,ISS)

protein folding chaperone (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Mammalian Ric-8A (synembryn) is a heterotrimeric Galpha protein guanine nucleotide exchange factor.	Tall GG, etal., J Biol Chem 2003 Mar 7;278(10):8356-62.

Additional References at PubMed

PMID:12652642	PMID:21467038	PMID:24585571	PMID:26966186

Genomics

Comparative Map Data

Ric8b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	20,636,337 - 20,730,066 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	20,636,687 - 20,730,178 (-)	Ensembl				GRCr8
mRatBN7.2	7	18,746,716 - 18,843,264 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	18,748,641 - 18,842,372 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	20,710,861 - 20,803,310 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	22,873,544 - 22,965,991 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	22,650,520 - 22,742,965 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	25,919,266 - 26,015,506 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	25,919,867 - 26,012,344 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	26,049,060 - 26,145,319 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	20,871,670 - 20,965,053 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	15,965,495 - 16,057,891 (-)	NCBI		Celera
RGSC_v3.1	7	20,891,940 - 20,985,324 (-)	NCBI
Cytogenetic Map	7	q13	NCBI

RIC8B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	106,774,682 - 106,889,316 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	106,774,621 - 106,889,316 (+)	Ensembl			hg38	GRCh38
GRCh37	12	107,168,460 - 107,283,094 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	105,692,529 - 105,807,224 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	106,833,992 - 106,948,676 (+)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	104,228,794 - 104,343,508 (+)	NCBI		HuRef
CHM1_1	12	107,134,243 - 107,248,934 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	106,738,328 - 106,852,950 (+)	NCBI		T2T-CHM13v2.0

Ric8b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	84,753,136 - 84,854,201 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	84,753,480 - 84,854,201 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	84,917,268 - 85,018,337 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	84,917,616 - 85,018,337 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	84,380,361 - 84,479,192 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	84,347,415 - 84,446,246 (+)	NCBI		MGSCv36	mm8
Celera	10	86,895,399 - 86,994,277 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.63	NCBI

Ric8b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	40,659,953 - 40,783,150 (+)	Ensembl
ChiLan1.0	NW_004955405	40,659,946 - 40,782,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIC8B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	114,825,588 - 114,943,155 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	114,827,068 - 114,939,552 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	104,341,903 - 104,456,784 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	107,736,090 - 107,850,798 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	107,736,090 - 107,850,789 (+)	Ensembl			panPan2	panpan1.1

RIC8B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	31,883,764 - 31,982,622 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	31,885,041 - 31,982,514 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	31,868,394 - 31,886,606 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	32,724,734 - 32,824,108 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	32,722,675 - 32,823,740 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	32,460,815 - 32,560,165 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	32,750,948 - 32,850,235 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	32,937,322 - 33,036,409 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ric8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	15,073,076 - 15,180,621 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	8,081,701 - 8,190,698 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	8,081,821 - 8,190,681 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIC8B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	13,468,937 - 13,580,164 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	13,468,933 - 13,580,497 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	13,323,854 - 13,432,521 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIC8B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	101,983,459 - 102,100,478 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	101,982,872 - 102,087,627 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	142,947,740 - 143,065,274 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ric8b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	2,600,383 - 2,712,113 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	2,600,465 - 2,712,120 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ric8b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	163,432,258 - 163,526,725 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ric8b
1082 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	29
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000009625
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH138502

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	18,758,590 - 18,758,772 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	26,003,450 - 26,003,631	NCBI	Rnor6.0
Rnor_5.0	7	26,133,263 - 26,133,444	UniSTS	Rnor5.0
RGSC_v3.4	7	20,880,383 - 20,880,564	UniSTS	RGSC3.4
Celera	7	15,974,208 - 15,974,389	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001437970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_175598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY177755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009625 ⟹ ENSRNOP00000009625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	20,644,018 - 20,730,066 (-)	Ensembl
mRatBN7.2 Ensembl	7	18,748,659 - 18,842,372 (-)	Ensembl
Rnor_6.0 Ensembl	7	25,919,867 - 26,012,344 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090153 ⟹ ENSRNOP00000069306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	20,636,687 - 20,730,066 (-)	Ensembl
mRatBN7.2 Ensembl	7	18,748,642 - 18,842,347 (-)	Ensembl
Rnor_6.0 Ensembl	7	25,919,871 - 26,002,326 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093769 ⟹ ENSRNOP00000082457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	20,647,748 - 20,730,066 (-)	Ensembl
mRatBN7.2 Ensembl	7	18,748,642 - 18,842,347 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098436 ⟹ ENSRNOP00000089623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	20,637,578 - 20,730,066 (-)	Ensembl
mRatBN7.2 Ensembl	7	18,748,659 - 18,842,372 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103484 ⟹ ENSRNOP00000076678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	20,644,018 - 20,730,066 (-)	Ensembl
mRatBN7.2 Ensembl	7	18,748,641 - 18,842,347 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173351 ⟹ ENSRNOP00000103079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	20,637,578 - 20,730,178 (-)	Ensembl

RefSeq Acc Id:

NM_175598 ⟹ NP_783188

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,637,578 - 20,730,066 (-)	NCBI
mRatBN7.2	7	18,749,878 - 18,842,368 (-)	NCBI
Rnor_6.0	7	25,919,867 - 26,012,344 (+)	NCBI
Rnor_5.0	7	26,049,060 - 26,145,319 (+)	NCBI
RGSC_v3.4	7	20,871,670 - 20,965,053 (-)	RGD
Celera	7	15,965,495 - 16,057,891 (-)	RGD

Sequence:

show sequence

AGCGAGGTAGCGGGGGCGCGAGGCGTTTACCTGGGAGGCAGCGGCTGGGGCGCGCACAGCGGCT
GCGGCTCCCCCGCACCTGCGGCCATGGATGAAGAGCGCGCCCTCTACATCGTCCGGGCCGGCGA
GGCGGGGGCTATCGAGCGGGTCCTGAGAGATTACAGCGACAAGCATAGGGCTACTTTCAAATTT
GAATCAGCAGATGAAGATAAAAGAAAGAAACTCTGTGAAGGCATATTTAAGGTCCTGGTAAAGG
GTGTCCCAACAACATGCCAAGTGCCCTGCCTGGAAGTTCTCCGCATTCTCTCCAGAGACAAAAA
GATTTTAGCTCCTGTAACAACTGAGGAAAATATGCAAATACTGCTGAGACTGGCCAAGCTCCAT
GAGTCGGACGATTCTTTGGAGAAGGTGTCAGAGTTCCCGGTCATTGTGGAGTCATTGAAATGTC
TTTGTAACATCGTGTTCAACAGTCAGGTGGCACAGCAGCTTAGCCTGGAACTGAATCTCGCTGC
AAAGCTCTGTAACCTCCTGAGGAAGTGCAAGGACCGGAAATTTATCAATGACATAAAGTGCTTT
GACCTGCGCTTGCTCTTTGTCCTGTCACTTTTGCACACTGACATCAGGTCACAATTGCGCTATG
AGCTCCAGGGACTGCCGCTGCTAACCCAGATCTTGGAAAGTGCCTTTAGCATCAAGTGGACCGA
TGAGTATGAGTCGGCCATAGACCATAGTGGACCTCCTCTCTCACCTCAGGAGACAGACTGTGCC
ATTGAGGCCCTCAAAGCTCTGTTCAATGTGACGGTAGACAGTTGGAAGGTGCATAAAGAGAGCG
ATTCTCATCAGTTCCGTGTCATGGCCGCTGTCCTTCGCCACTGTTTACTAATTGTAGGTCCAAC
CGAAGACAAAACGGAAGAGCTGCACAGTAATGCCGTCAACCTTTTAAGCAATGTTCCAGTCTCT
TGTTTGGATGTTCTCATTTGTCCATTAACCCATGAAGAAACAGCCCAGGAGGCAGCAACTCTAG
ACGAACTGCCCGGTGATAAGACAGCAGAGAAAGACACGGCTTTGAAGAGCAGTGCCATGGTATA
CAATGGCATGAACATGGAGGCCATCCACGTTTTACTCAGTTTTATGGAGAAGAGGATTGATAAG
GGAAGCAGCTATAGAGAGGGTCTAACTCCAGTTCTCAGCTTATTAACAGAATGTTCCCGAGCCC
ATCGGAACATCCGAAAATTTCTCAAAGATCAGGTGTTACCACCTTTGAGGGATGTGACAAATCG
ACCAGAAGTCGGCTCAACCGTGAGAAATAAGCTGGTGCGCCTCATGACACACGTTGACCTCGGA
GTCAAGCAGATTGCTGCTGAGTTCCTCTTCGTCCTTTGCAAAGAGCGAGTGGATAGTCTGCTGA
AGTACACTGGCTATGGGAACGCTGCAGGACTGCTGGCTGCCAGGGGCCTCTTGGCTGGAGGAAG
AGGAGACAATTGGTACTCAGAGGACGAGGACACGGACACTGAGGAATACAAAAACGCAAAACCA
AAAGAGGAGTTGCTTAAACCAATGGGACTAAAACCTGACGGGACAATAACGCCTTTGGAGGAAG
CGCTCAGCCAGTATTCTGTCATCGAAGAGACCAGCTCGGACACAGACTGAAAGCGCCGTCACCT
GCTCCCTCTCAATATGGCTTTTATCAGCATCTTTTCTCTGTAGCTCCAGGGGAATCTTCTCTAG
AACGTTTATGCCCTTGCTTTGGCTAGAAACAC

hide sequence

RefSeq Acc Id:

XM_006241180 ⟹ XP_006241242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,636,337 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,746,716 - 18,843,264 (-)	NCBI
Rnor_6.0	7	25,919,268 - 26,015,506 (+)	NCBI
Rnor_5.0	7	26,049,060 - 26,145,319 (+)	NCBI

Sequence:

show sequence

CAGTTTAGACCCTCCCACTAACGAAGGGTCCCTCCGCCTTTGGCCCCGGGCGGTCGCAGGACTC
TGGTTTCCGGCCTTCAGGGAACTACATTTTCCAGCATGCCTTTTGGAAAGCGGAAAAATCTTTC
GCACTGGTTGACTACCAATTCCGGCCTGCTGTTCGGTTCCCTAATAACTCCGATGACAGCGTGG
GATGACCCCGTTGCACGTCGGGAATTGTAGTTTAGTAGCGGTAGGCTCGCAGATGGGCGGGGAG
CAGCCCGCCAGTTCTCGTCCGCTAAAGGGGAATGATTCATAGAGTGTTAGGAGAGACAGGTCTG
CTCGTGAAAGCCCGCTGCGAAGCCGAACTCTTCTCCAAGGCTGGTAGACCGAGGGGAGTAGGCA
CGGCTTGGGCCTGACTCAGTCTCTGGTGGCTCGTCAGGCCTCCACTAAGCCTTGGGCCTTGTCG
GGGGAGGCCTCTAGGCGCCCGTTGCTGGGGGAGCGGTGACGTCGCGGGGTGAAAGTTGAGGGGC
GGTGACGTAGGGCCTGCCCGGGCGGAGGCTGGCGGGTTGGAGACTGGAGGGAGGGAGGGAAGGA
GGGAAGGAAGGAAGCTGGGAAGGAGCGAGGTAGCGGGGGCGCGAGGCGTTTACCTGGGAGGCAG
CGGCTGGGGCGCGCACAGCGGCTGCGGCTCCCCCGCACCTGCGGCCATGGATGAAGAGCGCGCC
CTCTACATCGTCCGGGCCGGCGAGGCGGGGGCTATCGAGCGGGTCCTGAGAGATTACAGCGACA
AGCATAGGGCTACTTTCAAATTTGAATCAGCAGATGAAGATAAAAGAAAGAAACTCTGTGAAGG
CATATTTAAGGTCCTGGTAAAGGGTGTCCCAACAACATGCCAAGTGCCCTGCCTGGAAGTTCTC
CGCATTCTCTCCAGAGACAAAAAGATTTTAGCTCCTGTAACAACTGAGGAAAATATGCAAATAC
TGCTGAGACTGGCCAAGCTCCATGAGTCGGACGATTCTTTGGAGAAGGTGTCAGAGTTCCCGGT
CATTGTGGAGTCATTGAAATGTCTTTGTAACATCGTGTTCAACAGTCAGGTGGCACAGCAGCTT
AGCCTGGAACTGAATCTCGCTGCAAAGCTCTGTAACCTCCTGAGGAAGTGCAAGGACCGAAAAT
TTATCAATGACATAAAGTGCTTTGACCTGCGCTTGCTCTTTGTCCTGTCACTTTTGCACACTGA
CATCAGGTCACAATTGCGCTATGAGCTCCAGGGACTGCCGCTGCTAACCCAGATCTTGGAAAGT
GCCTTTAGCATCAAGTGGACCGATGAGTATGAGTCGGCCATAGACCATAGTGGACCTCCTCTCT
CACCTCAGGAGACAGACTGTGCCATTGAGGCCCTCAAAGCTCTGTTCAATGTGACGGTAGACAG
TTGGAAGGTGCATAAAGAGAGCGATTCTCATCAGTTCCGTGTCATGGCCGCTGTCCTTCGCCAC
TGTTTACTAATTGTAGGTCCAACCGAAGACAAAACGGAAGAGCTGCACAGTAATGCCGTCAACC
TTTTAAGCAATGTTCCAGTCTCTTGTTTGGATGTTCTCATTTGTCCATTAACCCATGAAGAAAC
AGCCCAGGAGGCAGCAACTCTAGACGAACTGCCCGGTGATAAGACAGCAGAGAAAGACACGGCT
TTGAAGAGCAGTGCCATGGTATACAATGGCATGAACATGGAGGCCATCCACGTTTTACTCAGTT
TTATGGAGAAGAGGATTGATAAGGGAAGCAGCTATAGAGAGGGTCTAACTCCAGTTCTCAGCTT
ATTAACAGAATGTTCCCGAGCCCATCGGAACATCCGAAAATTTCTCAAAGATCAGGTGTTACCA
CCTTTGAGGGATGTGACAAATCGACCAGAAGTCGGCTCAACCGTGAGAAATAAGCTGGTGCGCC
TCATGACACACGTTGACCTCGGAGTCAAGCAGATTGCTGCTGAGTTCCTCTTCGTCCTTTGCAA
AGAGCGAGTGGATAGTCTGCTGAAGTACACTGGCTATGGGAACGCTGCAGGACTGCTGGCTGCC
AGGGGCCTCTTGGCTGGAGGAAGAGGAGACAATTGGTACTCAGAGGACGAGGACACGGACACTG
AGGAATACAAAAACGCAAAACCAAACATTAATCTTATCACTGGTCATTTAGAGGAACCAATGCC
AAACCCTATAGATGAAATGACAGAAGAACAAAAAGAATATGAAGCCATGAAACTTGTCAACATG
CTTGATAAACTCTCCAGAGAGGAGTTGCTTAAACCAATGGGACTAAAACCTGACGGGACAATAA
CGCCTTTGGAGGAAGCGCTCAGCCAGTATTCTGTCATCGAAGAGACCAGCTCGGACACAGACTG
AAAGCGCCGTCACCTGCTCCCTCTCAATATGGCTTTTATCAGCATCTTTTCTCTGTAGCTCCAG
GGGAATCTTCTCTAGAACGTTTATGCCCTCGCTTTGGCTAGAAACACATTAACTGGTTTACTCA
TCGGGAATCCAGCATATTTAAGAGGTAATCCTGTGTTTTCTGCAACATTGAGGCATTCGTACAG
AGCTGCAGTCAGGCAGAGTTGCGGGGCTAGAAGCAGAAGCTGCCATCCCATTGCACCAGGACGG
AGGATGGGACTTCACTTGGCAAAGCAGCCCTGGTCAAATCTGGCAGTCCTATTGCCGGGAATTC
CTAGCCGAAGATTCGGCCGTGTCCTTCCACCCATCGTATAAACCGCCCCTCTGAGTCTCTCCAG
CGACCCAAGGCACAGGAGAGTCCGAGGAGCTGCTAAACAAGGGCTGAGGCAAGCAACTCCTTAG
GTCAGCGCTGACTGAATGGAAGCCAGGCAGCTGCTCCGAAAGCCTAGCCCCACCCTTCATTTCA
GTTTTATACAAATGTGGAAACACACACATACACGCACGCATACGCGCGCGCGCGCGCACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
CGGCCCCAGACTTACAAACCTATTAAGCTCTCACAGTTGGTTACTTAGCTAACACTTGAGATTA
CATTTCTCCCTAGGAGGAGTTAGCAGTGATGGGTTAGTTCAGGCAGCTCCACGTGCCTATTTAC
CCCTCGATCCTGAACACTACTAGAACCGTAGGGCTGGACCACACCTGTACCGCTGCGTCCACAG
CGTGCATTCTGAGATACCACTCAGGGTGCCAAGTTCACACTCATCCTCAGGCAACAGAGAGGAT
GGGGCTCCCCGAGTAGTGGGAGTTCTTTTGTGGCCTGTGCTGGGGCAGGGAGCCAACAGCACCC
ATTTGTACATACAGGTCATTCGTGTGTCACATGTTCTAAACAGGGGTCTCTGTGTGTATTTGTG
TGTGTGTTCTACCTTTCTACCATATGTGATCAGTTTAATGGTAACTTTATTTATTTAAAAAAAA
AGAAACACAGATAGTTACTATTGAACTGATTAAGGCTGTGTATTTGTACTCCTAGGAATGGTCA
TATGAAGTAGATGTGCAATCATGTAGACAGCAGGCCAAGGTGATCAGTGGCTAAGGTTGGAAAG
GGGTTGGTTTCTCTCATATATGTATGTATGTGTGTGTAGATGCGCATACATAGGTATATGCACA
CATAGATTATGTGCTTGGCCACTGCCTTTTAAAACTTTAAATTAAATAAAACGTTGGGGATGAT
TCAATTTAGCCATCTTTGTGTGTTTCTTTGTGGATATGTGGGCTGAGGACACCATTGCACGGTT
TGTGTTTTAAGTCTTTCTCCACCCTCTCCCTCACGTCATGACGCAGCCTCCTACAGAACAAGAG
TGGGCAGCACTGGTGAGGACACATTTACCGTAAACTGCCCCTGGCAAGACTACATGCCAAGAAT
TGAACCTTAAAAGGCCTGAGGGGAACCCTTAAACAATAGTCGCCATCACTGAGATTCATGTCCA
TTTCAAACATGTTTGATTGCCTGGACTTTGAGCCCTTACCCCGTACAGAGGCAGAAAAGAAGGT
TAATGGATTTAAAGTAGACGCACTGAAAGCAAGAGAAGTCAGCCGGGAGTGGGAAGCCTGCAGC
ACGCACTCCTGCCTATTCAAACAGGGGTCAGTGTGCACATCAAGGTGAGAGAGAAGAAACACCA
TCCAAGGCACAGGATACCAGGACTCTACTTACCCAGAAATAGTGTGTGTGACAGTGTGCCCAGA
GATGTGCTTTCCCAGTAGCTGCCCTGAGCTGCTGTAAAAGGACCAGTGAGAATACTTGGAAGAA
GACTAGGGAGTGCACACACATTATAGGACTCTGCCCATAACTGCCGAGAAGAGCTGTGGTTGGT
GACCCATGTCTTAGCCAATGGCGCCGTCAAGAAAACTTTCATTTTATTCGGCAATTTGTAATTT
TAGCCTACATGAAAAAAATTTCAGAGAAAAAGGAACTTAGTAATTTTGTTATTTTATTCTACAA
ATCCATTTTGAAAGTATTTTTATAATCTCTGGTCAGATAGCTTTTCCGTCAACCTACGAAAGCA
AGGTGCACCCGGTGACATGCCACCTTGCCGTCTCTGGGCAAGTGCTTGCACGGTGCTGTAGCTG
TGCTACGAGGCTTTCAACGAGTCCCTTTCCCCTTGCATCTCTGTGCTGGGTACTTAATGATGTT
ACTTTTTGCTTGTTTGTTTTTTAAAGGTTAACTCTGTAAAAGAAGGAATAGCTTCACCTTGCAC
ACAGAGAACACTGAGCATCAAGCTTCGTGTCTTCCCTGTAACTTCACCCCATCTCCAGGCAGAG
CCTTTCCAGAGAGCTTCTTAGCTTCCTAGTCCCTCAGCAAGTCAGGGTCCAGCTGTGGGTTTGA
CTCCTGCACCTTCCCTATTACCTGCAGAACCACTAGCAGAGGCTTTGAGACAGAAGCAGCACGG
GCTGCTGAAGGTGGTCCTTCCCAGACCATTAAAGCAATAACTATTGGAGCTGCAGTCTCTGGCG
TCCCCATCCCATCTGCATGAGAGGAAGAAGCAGATTTTAGAGGAAGACCTAGACACCCTTAGGT
CAGAGACCAACCGTGTGGGCCAGTCCTTCTCCGGTGAGAGGAGTCAGACAGTGACCACTGCAGT
TTACAGCCTTTTCCATATACTGGACTTCGGAAGCAGAGGGTGGATGGAAAAGCATTGGAACTCC
TTAGACTAGGGACAATTTCCAGATGTCTGTGACCCTTTCCAGGCCAGTGGTTTTTAGTGGCAGA
TAGGGCTAATGCTGCCTTTCCTCTATATATGACACAGGTTGAATGAAGCTTTTCAAGTGACTGA
ACAGTGCCTCAGCACGTAAGTCTTGCCGCCCCCCAGGACTAGGTATCAATCTACATCAGCTTTC
TTTTCCCCTCTTGTCTATCAGTCATACGTGCTCCTTGTATAATGTTTAAAACATGCGGAAACAA
TAAAACTAGATATTGACCCAGAGTCCTGCCCCAAGAGCATTACTGTTAATGTTTAGTGTATTCC
TTTCCTATATTTTTTCTATGCATATATAATTTATTTTACTATAAGATTGGGATCATGCTGTGTT
TACAGATTTGTACCCTGCTTTCCTTAACATTGTGAGCATTTTCCCATACCAATAAATATTCTTC
AAATGTTAA

hide sequence

RefSeq Acc Id:

XM_006241182 ⟹ XP_006241244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,636,337 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,746,716 - 18,843,264 (-)	NCBI
Rnor_6.0	7	25,919,266 - 26,015,506 (+)	NCBI
Rnor_5.0	7	26,049,060 - 26,145,319 (+)	NCBI

Sequence:

show sequence

CCCAGTTTAGACCCTCCCACTAACGAAGGGTCCCTCCGCCTTTGGCCCCGGGCGGTCGCAGGAC
TCTGGTTTCCGGCCTTCAGGGAACTACATTTTCCAGCATGCCTTTTGGAAAGCGGAAAAATCTT
TCGCACTGGTTGACTACCAATTCCGGCCTGCTGTTCGGTTCCCTAATAACTCCGATGACAGCGT
GGGATGACCCCGTTGCACGTCGGGAATTGTAGTTTAGTAGCGGTAGGCTCGCAGATGGGCGGGG
AGCAGCCCGCCAGTTCTCGTCCGCTAAAGGGGAATGATTCATAGAGTGTTAGGAGAGACAGGTC
TGCTCGTGAAAGCCCGCTGCGAAGCCGAACTCTTCTCCAAGGCTGGTAGACCGAGGGGAGTAGG
CACGGCTTGGGCCTGACTCAGTCTCTGGTGGCTCGTCAGGCCTCCACTAAGCCTTGGGCCTTGT
CGGGGGAGGCCTCTAGGCGCCCGTTGCTGGGGGAGCGGTGACGTCGCGGGGTGAAAGTTGAGGG
GCGGTGACGTAGGGCCTGCCCGGGCGGAGGCTGGCGGGTTGGAGACTGGAGGGAGGGAGGGAAG
GAGGGAAGGAAGGAAGCTGGGAAGGAGCGAGGTAGCGGGGGCGCGAGGCGTTTACCTGGGAGGC
AGCGGCTGGGGCGCGCACAGCGGCTGCGGCTCCCCCGCACCTGCGGCCATGGATGAAGAGCGCG
CCCTCTACATCGTCCGGGCCGGCGAGGCGGGGGCTATCGAGCGGGTCCTGAGAGATTACAGCGA
CAAGCATAGGGCTACTTTCAAATTTGAATCAGCAGATGAAGATAAAAGAAAGAAACTCTGTGAA
GGCATATTTAAGGTCCTGGTAAAGGGTGTCCCAACAACATGCCAAGTGCCCTGCCTGGAAGTTC
TCCGCATTCTCTCCAGAGACAAAAAGATTTTAGCTCCTGTAACAACTGAGGAAAATATGCAAAT
ACTGCTGAGACTGGCCAAGCTCCATGAGTCGGACGATTCTTTGGAGAAGGTGTCAGAGTTCCCG
GTCATTGTGGAGTCATTGAAATGTCTTTGTAACATCGTGTTCAACAGTCAGGTGGCACAGCAGC
TTAGCCTGGAACTGAATCTCGCTGCAAAGCTCTGTAACCTCCTGAGGAAGTGCAAGGACCGAAA
ATTTATCAATGACATAAAGTGCTTTGACCTGCGCTTGCTCTTTGTCCTGTCACTTTTGCACACT
GACATCAGGTCACAATTGCGCTATGAGCTCCAGGGACTGCCGCTGCTAACCCAGATCTTGGAAA
GTGCCTTTAGCATCAAGTGGACCGATGAGTATGAGTCGGCCATAGACCATAGTGGACCTCCTCT
CTCACCTCAGGAGACAGACTGTGCCATTGAGGCCCTCAAAGCTCTGTTCAATGTGACGGTAGAC
AGTTGGAAGGTGCATAAAGAGAGCGATTCTCATCAGTTCCGTGTCATGGCCGCTGTCCTTCGCC
ACTGTTTACTAATTGTAGGTCCAACCGAAGACAAAACGGAAGAGCTGCACAGTAATGCCGTCAA
CCTTTTAAGCAATGTTCCAGTCTCTTGTTTGGATGTTCTCATTTGTCCATTAACCCATGAAGAA
ACAGCCCAGGAGGCAGCAACTCTAGACGAACTGCCCGGTGATAAGACAGCAGAGAAAGACACGG
CTTTGAAGAGCAGTGCCATGGTATACAATGGCATGAACATGGAGGCCATCCACGTTTTACTCAG
TTTTATGGAGAAGAGGATTGATAAGGTGTTACCACCTTTGAGGGATGTGACAAATCGACCAGAA
GTCGGCTCAACCGTGAGAAATAAGCTGGTGCGCCTCATGACACACGTTGACCTCGGAGTCAAGC
AGATTGCTGCTGAGTTCCTCTTCGTCCTTTGCAAAGAGCGAGTGGATAGTCTGCTGAAGTACAC
TGGCTATGGGAACGCTGCAGGACTGCTGGCTGCCAGGGGCCTCTTGGCTGGAGGAAGAGGAGAC
AATTGGTACTCAGAGGACGAGGACACGGACACTGAGGAATACAAAAACGCAAAACCAAACATTA
ATCTTATCACTGGTCATTTAGAGGAACCAATGCCAAACCCTATAGATGAAATGACAGAAGAACA
AAAAGAATATGAAGCCATGAAACTTGTCAACATGCTTGATAAACTCTCCAGAGAGGAGTTGCTT
AAACCAATGGGACTAAAACCTGACGGGACAATAACGCCTTTGGAGGAAGCGCTCAGCCAGTATT
CTGTCATCGAAGAGACCAGCTCGGACACAGACTGAAAGCGCCGTCACCTGCTCCCTCTCAATAT
GGCTTTTATCAGCATCTTTTCTCTGTAGCTCCAGGGGAATCTTCTCTAGAACGTTTATGCCCTC
GCTTTGGCTAGAAACACATTAACTGGTTTACTCATCGGGAATCCAGCATATTTAAGAGGTAATC
CTGTGTTTTCTGCAACATTGAGGCATTCGTACAGAGCTGCAGTCAGGCAGAGTTGCGGGGCTAG
AAGCAGAAGCTGCCATCCCATTGCACCAGGACGGAGGATGGGACTTCACTTGGCAAAGCAGCCC
TGGTCAAATCTGGCAGTCCTATTGCCGGGAATTCCTAGCCGAAGATTCGGCCGTGTCCTTCCAC
CCATCGTATAAACCGCCCCTCTGAGTCTCTCCAGCGACCCAAGGCACAGGAGAGTCCGAGGAGC
TGCTAAACAAGGGCTGAGGCAAGCAACTCCTTAGGTCAGCGCTGACTGAATGGAAGCCAGGCAG
CTGCTCCGAAAGCCTAGCCCCACCCTTCATTTCAGTTTTATACAAATGTGGAAACACACACATA
CACGCACGCATACGCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACGGCCCCAGACTTACAAACCTATTAAGCTC
TCACAGTTGGTTACTTAGCTAACACTTGAGATTACATTTCTCCCTAGGAGGAGTTAGCAGTGAT
GGGTTAGTTCAGGCAGCTCCACGTGCCTATTTACCCCTCGATCCTGAACACTACTAGAACCGTA
GGGCTGGACCACACCTGTACCGCTGCGTCCACAGCGTGCATTCTGAGATACCACTCAGGGTGCC
AAGTTCACACTCATCCTCAGGCAACAGAGAGGATGGGGCTCCCCGAGTAGTGGGAGTTCTTTTG
TGGCCTGTGCTGGGGCAGGGAGCCAACAGCACCCATTTGTACATACAGGTCATTCGTGTGTCAC
ATGTTCTAAACAGGGGTCTCTGTGTGTATTTGTGTGTGTGTTCTACCTTTCTACCATATGTGAT
CAGTTTAATGGTAACTTTATTTATTTAAAAAAAAAGAAACACAGATAGTTACTATTGAACTGAT
TAAGGCTGTGTATTTGTACTCCTAGGAATGGTCATATGAAGTAGATGTGCAATCATGTAGACAG
CAGGCCAAGGTGATCAGTGGCTAAGGTTGGAAAGGGGTTGGTTTCTCTCATATATGTATGTATG
TGTGTGTAGATGCGCATACATAGGTATATGCACACATAGATTATGTGCTTGGCCACTGCCTTTT
AAAACTTTAAATTAAATAAAACGTTGGGGATGATTCAATTTAGCCATCTTTGTGTGTTTCTTTG
TGGATATGTGGGCTGAGGACACCATTGCACGGTTTGTGTTTTAAGTCTTTCTCCACCCTCTCCC
TCACGTCATGACGCAGCCTCCTACAGAACAAGAGTGGGCAGCACTGGTGAGGACACATTTACCG
TAAACTGCCCCTGGCAAGACTACATGCCAAGAATTGAACCTTAAAAGGCCTGAGGGGAACCCTT
AAACAATAGTCGCCATCACTGAGATTCATGTCCATTTCAAACATGTTTGATTGCCTGGACTTTG
AGCCCTTACCCCGTACAGAGGCAGAAAAGAAGGTTAATGGATTTAAAGTAGACGCACTGAAAGC
AAGAGAAGTCAGCCGGGAGTGGGAAGCCTGCAGCACGCACTCCTGCCTATTCAAACAGGGGTCA
GTGTGCACATCAAGGTGAGAGAGAAGAAACACCATCCAAGGCACAGGATACCAGGACTCTACTT
ACCCAGAAATAGTGTGTGTGACAGTGTGCCCAGAGATGTGCTTTCCCAGTAGCTGCCCTGAGCT
GCTGTAAAAGGACCAGTGAGAATACTTGGAAGAAGACTAGGGAGTGCACACACATTATAGGACT
CTGCCCATAACTGCCGAGAAGAGCTGTGGTTGGTGACCCATGTCTTAGCCAATGGCGCCGTCAA
GAAAACTTTCATTTTATTCGGCAATTTGTAATTTTAGCCTACATGAAAAAAATTTCAGAGAAAA
AGGAACTTAGTAATTTTGTTATTTTATTCTACAAATCCATTTTGAAAGTATTTTTATAATCTCT
GGTCAGATAGCTTTTCCGTCAACCTACGAAAGCAAGGTGCACCCGGTGACATGCCACCTTGCCG
TCTCTGGGCAAGTGCTTGCACGGTGCTGTAGCTGTGCTACGAGGCTTTCAACGAGTCCCTTTCC
CCTTGCATCTCTGTGCTGGGTACTTAATGATGTTACTTTTTGCTTGTTTGTTTTTTAAAGGTTA
ACTCTGTAAAAGAAGGAATAGCTTCACCTTGCACACAGAGAACACTGAGCATCAAGCTTCGTGT
CTTCCCTGTAACTTCACCCCATCTCCAGGCAGAGCCTTTCCAGAGAGCTTCTTAGCTTCCTAGT
CCCTCAGCAAGTCAGGGTCCAGCTGTGGGTTTGACTCCTGCACCTTCCCTATTACCTGCAGAAC
CACTAGCAGAGGCTTTGAGACAGAAGCAGCACGGGCTGCTGAAGGTGGTCCTTCCCAGACCATT
AAAGCAATAACTATTGGAGCTGCAGTCTCTGGCGTCCCCATCCCATCTGCATGAGAGGAAGAAG
CAGATTTTAGAGGAAGACCTAGACACCCTTAGGTCAGAGACCAACCGTGTGGGCCAGTCCTTCT
CCGGTGAGAGGAGTCAGACAGTGACCACTGCAGTTTACAGCCTTTTCCATATACTGGACTTCGG
AAGCAGAGGGTGGATGGAAAAGCATTGGAACTCCTTAGACTAGGGACAATTTCCAGATGTCTGT
GACCCTTTCCAGGCCAGTGGTTTTTAGTGGCAGATAGGGCTAATGCTGCCTTTCCTCTATATAT
GACACAGGTTGAATGAAGCTTTTCAAGTGACTGAACAGTGCCTCAGCACGTAAGTCTTGCCGCC
CCCCAGGACTAGGTATCAATCTACATCAGCTTTCTTTTCCCCTCTTGTCTATCAGTCATACGTG
CTCCTTGTATAATGTTTAAAACATGCGGAAACAATAAAACTAGATATTGACCCAGAGTCCTGCC
CCAAGAGCATTACTGTTAATGTTTAGTGTATTCCTTTCCTATATTTTTTCTATGCATATATAAT
TTATTTTACTATAAGATTGGGATCATGCTGTGTTTACAGATTTGTACCCTGCTTTCCTTAACAT
TGTGAGCATTTTCCCATACCAATAAATATTCTTCAAATGTTAA

hide sequence

RefSeq Acc Id:

XM_017594824 ⟹ XP_017450313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,637,664 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,746,716 - 18,842,378 (-)	NCBI
Rnor_6.0	7	25,919,267 - 26,012,208 (+)	NCBI

Sequence:

show sequence

CCAGTTTAGACCCTCCCACTAACGAAGGGTCCCTCCGCCTTTGGCCCCGGGCGGTCGCAGGACT
CTGGTTTCCGGCCTTCAGGGAACTACATTTTCCAGCATGCCTTTTGGAAAGCGGAAAAATCTTT
CGCACTGGTTGACTACCAATTCCGGCCTGCTGTTCGGTTCCCTAATAACTCCGATGACAGCGTG
GGATGACCCCGTTGCACGTCGGGAATTGTAGTTTAGTAGCGGTAGGCTCGCAGATGGGCGGGGA
GCAGCCCGCCAGTTCTCGTCCGCTAAAGGGGAATGATTCATAGAGTGTTAGGAGAGACAGGTCT
GCTCGTGAAAGCCCGCTGCGAAGCCGAACTCTTCTCCAAGGCTGGTAGACCGAGGGGAGTAGGC
ACGGCTTGGGCCTGACTCAGTCTCTGGTGGCTCGTCAGGCCTCCACTAAGCCTTGGGCCTTGTC
GGGGGAGGCCTCTAGGCGCCCGTTGCTGGGGGAGCGGTGACGTCGCGGGGTGAAAGTTGAGGGG
CGGTGACGTAGGGCCTGCCCGGGCGGAGGCTGGCGGGTTGGAGACTGGAGGGAGGGAGGGAAGG
AGGGAAGGAAGGAAGCTGGGAAGGAGCGAGGTAGCGGGGGCGCGAGGCGTTTACCTGGGAGGCA
GCGGCTGGGGCGCGCACAGCGGCTGCGGCTCCCCCGCACCTGCGGCCATGGATGAAGAGCGCGC
CCTCTACATCGTCCGGGCCGGCGAGGCGGGGGCTATCGAGCGGGTCCTGAGAGATTACAGCGAC
AAGCATAGGGCTACTTTCAAATTTGAATCAGCAGATGAAGATAAAAGAAAGAAACTCTGTGAAG
GCATATTTAAGGTCCTGGTAAAGGGTGTCCCAACAACATGCCAAGTGCCCTGCCTGGAAGTTCT
CCGCATTCTCTCCAGAGACAAAAAGATTTTAGCTCCTGTAACAACTGAGGAAAATATGCAAATA
CTGCTGAGACTGGCCAAGCTCCATGAGTCGGACGATTCTTTGGAGAAGGTGTCAGAGTTCCCGG
TCATTGTGGAGTCATTGAAATGTCTTTGTAACATCGTGTTCAACAGTCAGGTGGCACAGCAGCT
TAGCCTGGAACTGAATCTCGCTGCAAAGCTCTGTAACCTCCTGAGGAAGTGCAAGGACCGAAAA
TTTATCAATGACATAAAGTGCTTTGACCTGCGCTTGCTCTTTGTCCTGTCACTTTTGCACACTG
ACATCAGGTCACAATTGCGCTATGAGCTCCAGGGACTGCCGCTGCTAACCCAGATCTTGGAAAG
TGCCTTTAGCATCAAGTGGACCGATGAGTATGAGTCGGCCATAGACCATAGTGGACCTCCTCTC
TCACCTCAGGAGACAGACTGTGCCATTGAGGCCCTCAAAGCTCTGTTCAATGTGACGGTAGACA
GTTGGAAGGTGCATAAAGAGAGCGATTCTCATCAGTTCCGTGTCATGGCCGCTGTCCTTCGCCA
CTGTTTACTAATTGTAGGTCCAACCGAAGACAAAACGGAAGAGCTGCACAGTAATGCCGTCAAC
CTTTTAAGCAATGTTCCAGTCTCTTGTTTGGATGTTCTCATTTGTCCATTAACCCATGAAGAAA
CAGCCCAGGAGGCAGCAACTCTAGACGAACTGCCCGGTGATAAGACAGCAGAGAAAGACACGGC
TTTGAAGAGCAGTGCCATGGTATACAATGGCATGAACATGGAGGCCATCCACGTTTTACTCAGT
TTTATGGAGAAGAGGATTGATAAGGGAAGCAGCTATAGAGAGGGTCTAACTCCAGTTCTCAGCT
TATTAACAGAATGTTCCCGAGCCCATCGGAACATCCGAAAATTTCTCAAAGATCAGGTGTTACC
ACCTTTGAGGGATGTGACAAATCGACCAGAAGTCGGCTCAACCGTGAGAAATAAGCTGGTGCGC
CTCATGACACACGTTGACCTCGGAGTCAAGCAGATTGCTGCTGAGTTCCTCTTCGTCCTTTGCA
AAGAGCGAGTGGATAGTCTGCTGAAGTACACTGGCTATGGGAACGCTGCAGGACTGCTGGCTGC
CAGGGGCCTCTTGGCTGGAGGAAGAGGAGACAATTGGTACTCAGAGGACGAGGACACGGACACT
GAGGAATACAAAAACGCAAAACCAAACATTAATCTTATCACTGGTCATTTAGAGGAACCAATGC
CAAACCCTATAGATGAAATGACAGAAGAACAAAAAGAATATGAAGCCATGAAACTTGTCAACAT
GCTTGATAAACTCTCCAGGAGAGCGGATGTGAAGGACCTGCACCAGGATGGTGGTTAGCAACAG
TGGCCCGTGCCAAAGCACTTACCAAAGTGATGACTAAGAGAGGAGTTGCTTAAACCAATGGGAC
TAAAACCTGACGGGACAATAACGCCTTTGGAGGAAGCGCTCAGCCAGTATTCTGTCATCG

hide sequence

RefSeq Acc Id:

XM_063263436 ⟹ XP_063119506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,636,337 - 20,730,031 (-)	NCBI

RefSeq Acc Id:

XR_005486614

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,641,518 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,750,397 - 18,842,378 (-)	NCBI

RefSeq Acc Id:

XR_005486616

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,637,815 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,750,397 - 18,842,378 (-)	NCBI

RefSeq Acc Id:

XR_005486617

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,637,661 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,746,716 - 18,842,378 (-)	NCBI

RefSeq Acc Id:

XR_005486618

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,637,663 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,746,716 - 18,842,378 (-)	NCBI

RefSeq Acc Id:

XR_005486620

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,641,518 - 20,730,031 (-)	NCBI
mRatBN7.2	7	18,750,397 - 18,842,378 (-)	NCBI

RefSeq Acc Id:

XR_010052969

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	20,636,337 - 20,730,031 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001424899	(Get FASTA)	NCBI Sequence Viewer
	NP_001424900	(Get FASTA)	NCBI Sequence Viewer
	NP_783188	(Get FASTA)	NCBI Sequence Viewer
	XP_006241242	(Get FASTA)	NCBI Sequence Viewer
	XP_006241244	(Get FASTA)	NCBI Sequence Viewer
	XP_017450313	(Get FASTA)	NCBI Sequence Viewer
	XP_063119506	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO23337	(Get FASTA)	NCBI Sequence Viewer
	EDM17100	(Get FASTA)	NCBI Sequence Viewer
	EDM17101	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009625.4
	ENSRNOP00000069306
	ENSRNOP00000082457
	ENSRNOP00000089623
	ENSRNOP00000103079
GenBank Protein	Q80ZG0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_783188 ⟸ NM_175598

- UniProtKB:

Q80ZG0 (UniProtKB/Swiss-Prot), A6IFE7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESADEDKRKKLCEGIFKVLVKGVPTTCQV
PCLEVLRILSRDKKILAPVTTEENMQILLRLAKLHESDDSLEKVSEFPVIVESLKCLCNIVFNS
QVAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFVLSLLHTDIRSQLRYELQGLPLL
TQILESAFSIKWTDEYESAIDHSGPPLSPQETDCAIEALKALFNVTVDSWKVHKESDSHQFRVM
AAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPLTHEETAQEAATLDELPGDKT
AEKDTALKSSAMVYNGMNMEAIHVLLSFMEKRIDKGSSYREGLTPVLSLLTECSRAHRNIRKFL
KDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGVKQIAAEFLFVLCKERVDSLLKYTGYGNA
AGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPKEELLKPMGLKPDGTITPLEEALSQYSVI
EETSSDTD

hide sequence

RefSeq Acc Id:	XP_006241244 ⟸ XM_006241182
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5Y0A0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESADEDKRKKLCEGIFKVLVKGVPTTCQV PCLEVLRILSRDKKILAPVTTEENMQILLRLAKLHESDDSLEKVSEFPVIVESLKCLCNIVFNS QVAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFVLSLLHTDIRSQLRYELQGLPLL TQILESAFSIKWTDEYESAIDHSGPPLSPQETDCAIEALKALFNVTVDSWKVHKESDSHQFRVM AAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPLTHEETAQEAATLDELPGDKT AEKDTALKSSAMVYNGMNMEAIHVLLSFMEKRIDKVLPPLRDVTNRPEVGSTVRNKLVRLMTHV DLGVKQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN AKPNINLITGHLEEPMPNPIDEMTEEQKEYEAMKLVNMLDKLSREELLKPMGLKPDGTITPLEE ALSQYSVIEETSSDTD hide sequence

RefSeq Acc Id:

XP_006241242 ⟸ XM_006241180

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESADEDKRKKLCEGIFKVLVKGVPTTCQV
PCLEVLRILSRDKKILAPVTTEENMQILLRLAKLHESDDSLEKVSEFPVIVESLKCLCNIVFNS
QVAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFVLSLLHTDIRSQLRYELQGLPLL
TQILESAFSIKWTDEYESAIDHSGPPLSPQETDCAIEALKALFNVTVDSWKVHKESDSHQFRVM
AAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPLTHEETAQEAATLDELPGDKT
AEKDTALKSSAMVYNGMNMEAIHVLLSFMEKRIDKGSSYREGLTPVLSLLTECSRAHRNIRKFL
KDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGVKQIAAEFLFVLCKERVDSLLKYTGYGNA
AGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPNINLITGHLEEPMPNPIDEMTEEQKEYEA
MKLVNMLDKLSREELLKPMGLKPDGTITPLEEALSQYSVIEETSSDTD

hide sequence

RefSeq Acc Id:	XP_017450313 ⟸ XM_017594824
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G7F7 (UniProtKB/TrEMBL), A0A8I5Y0A0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESADEDKRKKLCEGIFKVLVKGVPTTCQV PCLEVLRILSRDKKILAPVTTEENMQILLRLAKLHESDDSLEKVSEFPVIVESLKCLCNIVFNS QVAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFVLSLLHTDIRSQLRYELQGLPLL TQILESAFSIKWTDEYESAIDHSGPPLSPQETDCAIEALKALFNVTVDSWKVHKESDSHQFRVM AAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPLTHEETAQEAATLDELPGDKT AEKDTALKSSAMVYNGMNMEAIHVLLSFMEKRIDKGSSYREGLTPVLSLLTECSRAHRNIRKFL KDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGVKQIAAEFLFVLCKERVDSLLKYTGYGNA AGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPNINLITGHLEEPMPNPIDEMTEEQKEYEA MKLVNMLDKLSRRADVKDLHQDGG hide sequence

Ensembl Acc Id:

ENSRNOP00000069306 ⟸ ENSRNOT00000090153

Ensembl Acc Id:

ENSRNOP00000009625 ⟸ ENSRNOT00000009625

Ensembl Acc Id:

ENSRNOP00000089623 ⟸ ENSRNOT00000098436

Ensembl Acc Id:

ENSRNOP00000076678 ⟸ ENSRNOT00000103484

Ensembl Acc Id:

ENSRNOP00000082457 ⟸ ENSRNOT00000093769

RefSeq Acc Id:	XP_063119506 ⟸ XM_063263436
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000103079 ⟸ ENSRNOT00000173351

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q80ZG0-F1-model_v2	AlphaFold	Q80ZG0	1-520	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695103

Promoter ID:

EPDNEW_R5628

Type:

single initiation site

Name:

Ric8b_1

Description:

RIC8 guanine nucleotide exchange factor B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	25,919,813 - 25,919,873	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631419	AgrOrtholog
BioCyc Gene	G2FUF-34624	BioCyc
Ensembl Genes	ENSRNOG00000007323	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009625.6	UniProtKB/Swiss-Prot
	ENSRNOT00000090153	ENTREZGENE
	ENSRNOT00000093769	ENTREZGENE
	ENSRNOT00000098436	ENTREZGENE
	ENSRNOT00000173351	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	Gua_nucleotide_exch_fac_Ric8	UniProtKB/Swiss-Prot
	Synembryn	UniProtKB/Swiss-Prot
KEGG Report	rno:314681	UniProtKB/Swiss-Prot
NCBI Gene	314681	ENTREZGENE
PANTHER	PTHR12425	UniProtKB/Swiss-Prot
	SYNEMBRYN-B	UniProtKB/Swiss-Prot
Pfam	Ric8	UniProtKB/Swiss-Prot
PhenoGen	Ric8b	PhenoGen
PRINTS	SYNEMBRYN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007323	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV09	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y0A0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G7F7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GI93	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LEJ7_RAT	UniProtKB/TrEMBL
	A6IFE7	ENTREZGENE, UniProtKB/TrEMBL
	A6IFE8	ENTREZGENE, UniProtKB/TrEMBL
	Q80ZG0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-09-18	Ric8b	RIC8 guanine nucleotide exchange factor B	Ric8b	resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Ric8b	resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)		resistance to inhibitors of cholinesterase 8B (C. elegans)	Name updated	1299863	APPROVED
2004-02-11	E3sp	resistance to inhibitors of cholinesterase 8B (C. elegans)	Ric8b	heterotrimeric G protein guanine nucleotide exchange factor-like protein Ric-8B	Name updated	625702	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_homology	homolog of C. elegans Ric-8	633903

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message