RIC8B (RIC8 guanine nucleotide exchange factor B) - Rat Genome Database

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Gene: RIC8B (RIC8 guanine nucleotide exchange factor B) Homo sapiens
Analyze
Symbol: RIC8B
Name: RIC8 guanine nucleotide exchange factor B
RGD ID: 1605657
HGNC Page HGNC:25555
Description: Enables G-protein alpha-subunit binding activity. Acts upstream of or within regulation of G protein-coupled receptor signaling pathway. Located in centrosome; cytosol; and plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: brain synembrin; brain synembryn; FLJ10620; hSyn; MGC39476; resistance to inhibitors of cholinesterase 8 homolog B; RIC8; synembryn-B
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,774,682 - 106,889,316 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,774,621 - 106,889,316 (+)EnsemblGRCh38hg38GRCh38
GRCh3712107,168,460 - 107,283,094 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,692,529 - 105,807,224 (+)NCBINCBI36Build 36hg18NCBI36
Celera12106,833,992 - 106,948,676 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12104,228,794 - 104,343,508 (+)NCBIHuRef
CHM1_112107,134,243 - 107,248,934 (+)NCBICHM1_1
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell cortex  (IEA)
centrosome  (IDA)
cytoplasm  (IBA,IEA)
cytosol  (IDA)
plasma membrane  (IBA,IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10737800   PMID:12477932   PMID:12509430   PMID:12652642   PMID:14702039   PMID:15489334   PMID:16344560   PMID:18029348   PMID:19460752   PMID:20133939   PMID:20205790   PMID:21873635  
PMID:24133439   PMID:26186194   PMID:26673895   PMID:26729411   PMID:26966186   PMID:28514442   PMID:28611215   PMID:30948266   PMID:31091453   PMID:32707033   PMID:33961781   PMID:34373451  
PMID:36805027  


Genomics

Comparative Map Data
RIC8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,774,682 - 106,889,316 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,774,621 - 106,889,316 (+)EnsemblGRCh38hg38GRCh38
GRCh3712107,168,460 - 107,283,094 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,692,529 - 105,807,224 (+)NCBINCBI36Build 36hg18NCBI36
Celera12106,833,992 - 106,948,676 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12104,228,794 - 104,343,508 (+)NCBIHuRef
CHM1_112107,134,243 - 107,248,934 (+)NCBICHM1_1
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBIT2T-CHM13v2.0
Ric8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,753,136 - 84,854,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1084,753,480 - 84,854,201 (+)EnsemblGRCm39 Ensembl
GRCm381084,917,268 - 85,018,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1084,917,616 - 85,018,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv371084,380,361 - 84,479,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361084,347,415 - 84,446,246 (+)NCBIMGSCv36mm8
Celera1086,895,399 - 86,994,277 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.63NCBI
Ric8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8720,636,337 - 20,730,066 (-)NCBIGRCr8
mRatBN7.2718,746,716 - 18,843,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl718,748,641 - 18,842,372 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx720,710,861 - 20,803,310 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0722,873,544 - 22,965,991 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0722,650,520 - 22,742,965 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0725,919,266 - 26,015,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl725,919,867 - 26,012,344 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,049,060 - 26,145,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4720,871,670 - 20,965,053 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1720,891,940 - 20,985,324 (-)NCBI
Celera715,965,495 - 16,057,891 (-)NCBICelera
Cytogenetic Map7q13NCBI
Ric8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,659,953 - 40,783,150 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,659,946 - 40,782,870 (+)NCBIChiLan1.0ChiLan1.0
RIC8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210114,825,588 - 114,943,155 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112114,827,068 - 114,939,552 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012104,341,903 - 104,456,784 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112107,736,090 - 107,850,798 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,736,090 - 107,850,789 (+)Ensemblpanpan1.1panPan2
RIC8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11031,883,764 - 31,982,622 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1031,885,041 - 31,982,514 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1031,868,394 - 31,886,606 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01032,724,734 - 32,824,108 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1032,722,675 - 32,823,740 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11032,460,815 - 32,560,165 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01032,750,948 - 32,850,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01032,937,322 - 33,036,409 (-)NCBIUU_Cfam_GSD_1.0
Ric8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494515,073,076 - 15,180,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364928,081,701 - 8,190,698 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364928,081,821 - 8,190,681 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIC8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,468,937 - 13,580,164 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,468,933 - 13,580,497 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2513,323,854 - 13,432,521 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RIC8B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111101,983,459 - 102,100,478 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11101,982,872 - 102,087,627 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037142,947,740 - 143,065,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ric8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247502,600,383 - 2,712,113 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247502,600,465 - 2,712,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RIC8B
15 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q23.3-24.13(chr12:105234677-112194686)x1 copy number loss See cases [RCV000050807] Chr12:105234677..112194686 [GRCh38]
Chr12:105628455..112632490 [GRCh37]
Chr12:104152585..111116873 [NCBI36]
Chr12:12q23.3-24.13
pathogenic
GRCh38/hg38 12q23.1-23.3(chr12:100670616-108583607)x1 copy number loss See cases [RCV000051320] Chr12:100670616..108583607 [GRCh38]
Chr12:101064394..108977383 [GRCh37]
Chr12:99588525..107501512 [NCBI36]
Chr12:12q23.1-23.3
pathogenic
GRCh38/hg38 12q23.3-24.11(chr12:105644967-108994840)x1 copy number loss See cases [RCV000138537] Chr12:105644967..108994840 [GRCh38]
Chr12:106038745..109432645 [GRCh37]
Chr12:104562875..107917026 [NCBI36]
Chr12:12q23.3-24.11
uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q23.3(chr12:106804832-107556040)x3 copy number gain See cases [RCV000141770] Chr12:106804832..107556040 [GRCh38]
Chr12:107198610..107949817 [GRCh37]
Chr12:105722740..106473947 [NCBI36]
Chr12:12q23.3
uncertain significance
GRCh38/hg38 12q21.33-24.11(chr12:91044318-109133210)x3 copy number gain See cases [RCV000142447] Chr12:91044318..109133210 [GRCh38]
Chr12:91438095..109571015 [GRCh37]
Chr12:89962226..108055398 [NCBI36]
Chr12:12q21.33-24.11
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12q23.2-24.11(chr12:103044333-111639805)x1 copy number loss See cases [RCV000445832] Chr12:103044333..111639805 [GRCh37]
Chr12:12q23.2-24.11
likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12q23.3(chr12:107119589-107216128)x3 copy number gain not provided [RCV000847358] Chr12:107119589..107216128 [GRCh37]
Chr12:12q23.3
uncertain significance
GRCh37/hg19 12q23.3-24.12(chr12:106498814-112252906)x1 copy number loss not provided [RCV001259630] Chr12:106498814..112252906 [GRCh37]
Chr12:12q23.3-24.12
pathogenic
GRCh37/hg19 12q23.3-24.11(chr12:107197584-109830564)x1 copy number loss not provided [RCV001270637] Chr12:107197584..109830564 [GRCh37]
Chr12:12q23.3-24.11
uncertain significance
GRCh37/hg19 12q23.3-24.12(chr12:104230462-111984801)x1 copy number loss not provided [RCV001834231] Chr12:104230462..111984801 [GRCh37]
Chr12:12q23.3-24.12
pathogenic
GRCh37/hg19 12q23.2-24.11(chr12:103044333-111639805) copy number loss not specified [RCV002053016] Chr12:103044333..111639805 [GRCh37]
Chr12:12q23.2-24.11
likely pathogenic
NM_001330145.2(RIC8B):c.1643A>G (p.Gln548Arg) single nucleotide variant not specified [RCV004239428] Chr12:106885975 [GRCh38]
Chr12:107279753 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.212G>A (p.Arg71His) single nucleotide variant not specified [RCV004112877] Chr12:106814775 [GRCh38]
Chr12:107208553 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.637G>A (p.Asp213Asn) single nucleotide variant not specified [RCV004256398] Chr12:106815200 [GRCh38]
Chr12:107208978 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.929C>T (p.Thr310Met) single nucleotide variant not specified [RCV004250678] Chr12:106842681 [GRCh38]
Chr12:107236459 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.1024A>G (p.Ile342Val) single nucleotide variant not specified [RCV004451576] Chr12:106842776 [GRCh38]
Chr12:107236554 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.150A>G (p.Ile50Met) single nucleotide variant not specified [RCV004451577] Chr12:106814713 [GRCh38]
Chr12:107208491 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.1663A>C (p.Thr555Pro) single nucleotide variant not specified [RCV004451578] Chr12:106885995 [GRCh38]
Chr12:107279773 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.347A>T (p.Glu116Val) single nucleotide variant not specified [RCV004451579] Chr12:106814910 [GRCh38]
Chr12:107208688 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.469A>G (p.Ile157Val) single nucleotide variant not specified [RCV004451580] Chr12:106815032 [GRCh38]
Chr12:107208810 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.680C>T (p.Ala227Val) single nucleotide variant not specified [RCV004451581] Chr12:106815243 [GRCh38]
Chr12:107209021 [GRCh37]
Chr12:12q23.3
uncertain significance
NM_001330145.2(RIC8B):c.710T>C (p.Val237Ala) single nucleotide variant not specified [RCV004451582] Chr12:106815273 [GRCh38]
Chr12:107209051 [GRCh37]
Chr12:12q23.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5050
Count of miRNA genes:1164
Interacting mature miRNAs:1469
Transcripts:ENST00000355478, ENST00000392837, ENST00000392839, ENST00000462949, ENST00000470628, ENST00000470960, ENST00000546449, ENST00000548914, ENST00000549643, ENST00000550215, ENST00000551756, ENST00000552619
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D12S330  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,179,540 - 107,179,707UniSTSGRCh37
Build 3612105,703,670 - 105,703,837RGDNCBI36
Celera12106,845,129 - 106,845,294RGD
Cytogenetic Map12q23.3UniSTS
HuRef12104,239,944 - 104,240,121UniSTS
Marshfield Genetic Map12116.08UniSTS
Marshfield Genetic Map12116.08RGD
Genethon Genetic Map12116.6UniSTS
GeneMap99-GB4 RH Map12427.59UniSTS
Whitehead-RH Map12514.3UniSTS
Whitehead-YAC Contig Map12 UniSTS
NCBI RH Map12708.3UniSTS
SGC33354  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,265,105 - 107,265,231UniSTSGRCh37
Build 3612105,789,235 - 105,789,361RGDNCBI36
Celera12106,930,687 - 106,930,813RGD
Cytogenetic Map12q23.3UniSTS
HuRef12104,325,515 - 104,325,641UniSTS
TNG Radiation Hybrid Map1252662.0UniSTS
GeneMap99-GB4 RH Map12422.12UniSTS
Whitehead-RH Map12515.1UniSTS
NCBI RH Map12708.3UniSTS
G54214  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,276,328 - 107,276,509UniSTSGRCh37
Build 3612105,800,458 - 105,800,639RGDNCBI36
Celera12106,941,910 - 106,942,091RGD
Cytogenetic Map12q23.3UniSTS
HuRef12104,336,740 - 104,336,921UniSTS
G54226  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,260,543 - 107,260,665UniSTSGRCh37
Build 3612105,784,673 - 105,784,795RGDNCBI36
Celera12106,926,129 - 106,926,251RGD
Cytogenetic Map12q23.3UniSTS
SHGC-132874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,240,278 - 107,240,469UniSTSGRCh37
Build 3612105,764,408 - 105,764,599RGDNCBI36
Celera12106,905,867 - 106,906,058RGD
Cytogenetic Map12q23.3UniSTS
HuRef12104,300,697 - 104,300,888UniSTS
TNG Radiation Hybrid Map1252645.0UniSTS
RH70139  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,281,235 - 107,281,389UniSTSGRCh37
Build 3612105,805,365 - 105,805,519RGDNCBI36
Celera12106,946,817 - 106,946,971RGD
Cytogenetic Map12q23.3UniSTS
GeneMap99-GB4 RH Map12427.95UniSTS
NCBI RH Map12708.3UniSTS
SHGC-53905  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,240,274 - 107,240,455UniSTSGRCh37
Build 3612105,764,404 - 105,764,585RGDNCBI36
Celera12106,905,863 - 106,906,044RGD
Cytogenetic Map12q23.3UniSTS
HuRef12104,300,693 - 104,300,874UniSTS
GeneMap99-G3 RH Map124457.0UniSTS
hSyn__6607  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712107,280,398 - 107,281,233UniSTSGRCh37
Build 3612105,804,528 - 105,805,363RGDNCBI36
Celera12106,945,980 - 106,946,815RGD
HuRef12104,340,812 - 104,341,647UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 212 510 870 37 81 38 1226 81 1759 79 483 738 1 60 980
Low 2227 2267 856 587 1627 427 3131 2112 1974 340 977 875 173 1 1144 1808 6 2
Below cutoff 214 221 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001330145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007063098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007063099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007063100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007063101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007063102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC090011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW896637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX876839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY221116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX105894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB215722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA014333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA118965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA325821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA534432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000355478   ⟹   ENSP00000347662
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,671 - 106,887,284 (+)Ensembl
RefSeq Acc Id: ENST00000392837   ⟹   ENSP00000376582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,682 - 106,889,316 (+)Ensembl
RefSeq Acc Id: ENST00000392839   ⟹   ENSP00000376583
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,640 - 106,886,786 (+)Ensembl
RefSeq Acc Id: ENST00000462949   ⟹   ENSP00000435301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,714 - 106,887,290 (+)Ensembl
RefSeq Acc Id: ENST00000470628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,746 - 106,871,505 (+)Ensembl
RefSeq Acc Id: ENST00000470960   ⟹   ENSP00000436359
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,822,258 - 106,887,282 (+)Ensembl
RefSeq Acc Id: ENST00000546449   ⟹   ENSP00000464118
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,870,823 - 106,886,360 (+)Ensembl
RefSeq Acc Id: ENST00000548914   ⟹   ENSP00000447701
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,663 - 106,860,316 (+)Ensembl
RefSeq Acc Id: ENST00000549643   ⟹   ENSP00000450396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,682 - 106,886,181 (+)Ensembl
RefSeq Acc Id: ENST00000550215   ⟹   ENSP00000447801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,621 - 106,814,870 (+)Ensembl
RefSeq Acc Id: ENST00000551756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,879,728 - 106,886,250 (+)Ensembl
RefSeq Acc Id: ENST00000552619   ⟹   ENSP00000448743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,774,682 - 106,814,966 (+)Ensembl
RefSeq Acc Id: NM_001330145   ⟹   NP_001317074
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001330146   ⟹   NP_001317075
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001330147   ⟹   NP_001317076
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351361   ⟹   NP_001338290
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351362   ⟹   NP_001338291
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351363   ⟹   NP_001338292
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351364   ⟹   NP_001338293
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351366   ⟹   NP_001338295
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351367   ⟹   NP_001338296
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018157   ⟹   NP_060627
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
GRCh3712107,168,077 - 107,283,094 (+)NCBI
Build 3612105,692,529 - 105,807,224 (+)NCBI Archive
Celera12106,833,992 - 106,948,676 (+)RGD
HuRef12104,228,794 - 104,343,508 (+)ENTREZGENE
CHM1_112107,134,243 - 107,248,934 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147131
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147132
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147133
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147134
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147135
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147136
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147137
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147138
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147139
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,889,316 (+)NCBI
T2T-CHM13v2.012106,738,328 - 106,852,950 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002957346
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,814,696 - 106,874,499 (+)NCBI
Sequence:
RefSeq Acc Id: XR_007063098
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,885,444 (+)NCBI
RefSeq Acc Id: XR_007063099
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,885,444 (+)NCBI
RefSeq Acc Id: XR_007063100
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,885,444 (+)NCBI
RefSeq Acc Id: XR_007063101
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,885,444 (+)NCBI
RefSeq Acc Id: XR_007063102
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,885,444 (+)NCBI
RefSeq Acc Id: XR_008488632
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012106,738,328 - 106,849,241 (+)NCBI
RefSeq Acc Id: XR_008488633
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012106,778,330 - 106,838,133 (+)NCBI
RefSeq Acc Id: XR_008488634
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012106,738,328 - 106,849,241 (+)NCBI
RefSeq Acc Id: XR_008488635
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012106,738,328 - 106,849,241 (+)NCBI
RefSeq Acc Id: XR_008488636
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012106,738,328 - 106,849,241 (+)NCBI
RefSeq Acc Id: XR_008488637
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012106,738,328 - 106,849,241 (+)NCBI
RefSeq Acc Id: NP_060627   ⟸   NM_018157
- Peptide Label: isoform 4
- UniProtKB: Q6ZRN4 (UniProtKB/Swiss-Prot),   Q4G103 (UniProtKB/Swiss-Prot),   A2RTZ0 (UniProtKB/Swiss-Prot),   Q86WD3 (UniProtKB/Swiss-Prot),   Q9NVN3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001338290   ⟸   NM_001351361
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: NP_001338291   ⟸   NM_001351362
- Peptide Label: isoform 6
- Sequence:
RefSeq Acc Id: NP_001338293   ⟸   NM_001351364
- Peptide Label: isoform 8
- Sequence:
RefSeq Acc Id: NP_001317076   ⟸   NM_001330147
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001317074   ⟸   NM_001330145
- Peptide Label: isoform 1
- UniProtKB: B7WPL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001338295   ⟸   NM_001351366
- Peptide Label: isoform 9
- Sequence:
RefSeq Acc Id: NP_001338296   ⟸   NM_001351367
- Peptide Label: isoform 10
- Sequence:
RefSeq Acc Id: NP_001317075   ⟸   NM_001330146
- Peptide Label: isoform 2
- UniProtKB: Q9NVN3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001338292   ⟸   NM_001351363
- Peptide Label: isoform 7
- Sequence:
RefSeq Acc Id: ENSP00000435301   ⟸   ENST00000462949
RefSeq Acc Id: ENSP00000464118   ⟸   ENST00000546449
RefSeq Acc Id: ENSP00000447701   ⟸   ENST00000548914
RefSeq Acc Id: ENSP00000450396   ⟸   ENST00000549643
RefSeq Acc Id: ENSP00000436359   ⟸   ENST00000470960
RefSeq Acc Id: ENSP00000376583   ⟸   ENST00000392839
RefSeq Acc Id: ENSP00000376582   ⟸   ENST00000392837
RefSeq Acc Id: ENSP00000447801   ⟸   ENST00000550215
RefSeq Acc Id: ENSP00000347662   ⟸   ENST00000355478
RefSeq Acc Id: ENSP00000448743   ⟸   ENST00000552619

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NVN3-F1-model_v2 AlphaFold Q9NVN3 1-520 view protein structure

Promoters
RGD ID:6790440
Promoter ID:HG_KWN:16540
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000392837,   NM_018157,   UC001TLW.2,   UC001TLY.1,   UC001TLZ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3612105,691,946 - 105,692,702 (+)MPROMDB
RGD ID:7225281
Promoter ID:EPDNEW_H18386
Type:initiation region
Name:RIC8B_1
Description:RIC8 guanine nucleotide exchange factor B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812106,774,682 - 106,774,742EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25555 AgrOrtholog
COSMIC RIC8B COSMIC
Ensembl Genes ENSG00000111785 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000355478 ENTREZGENE
  ENST00000355478.6 UniProtKB/Swiss-Prot
  ENST00000392837 ENTREZGENE
  ENST00000392837.9 UniProtKB/TrEMBL
  ENST00000392839 ENTREZGENE
  ENST00000392839.6 UniProtKB/Swiss-Prot
  ENST00000462949 ENTREZGENE
  ENST00000462949.5 UniProtKB/Swiss-Prot
  ENST00000470960.1 UniProtKB/Swiss-Prot
  ENST00000546449.2 UniProtKB/TrEMBL
  ENST00000548914.5 UniProtKB/TrEMBL
  ENST00000549643.5 UniProtKB/TrEMBL
  ENST00000550215.5 UniProtKB/TrEMBL
  ENST00000552619.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000111785 GTEx
HGNC ID HGNC:25555 ENTREZGENE
Human Proteome Map RIC8B Human Proteome Map
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gua_nucleotide_exch_fac_Ric8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synembryn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55188 UniProtKB/Swiss-Prot
NCBI Gene 55188 ENTREZGENE
OMIM 609147 OMIM
PANTHER PTHR12425 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNEMBRYN-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ric8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142671064 PharmGKB
PRINTS SYNEMBRYN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RTZ0 ENTREZGENE
  B7WPL0 ENTREZGENE, UniProtKB/TrEMBL
  F8VR30_HUMAN UniProtKB/TrEMBL
  F8VSN5_HUMAN UniProtKB/TrEMBL
  F8VY51_HUMAN UniProtKB/TrEMBL
  H0YHS3_HUMAN UniProtKB/TrEMBL
  J3QRA4_HUMAN UniProtKB/TrEMBL
  Q4G103 ENTREZGENE
  Q6ZRN4 ENTREZGENE
  Q86WD3 ENTREZGENE
  Q9NVN3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2RTZ0 UniProtKB/Swiss-Prot
  Q4G103 UniProtKB/Swiss-Prot
  Q6ZRN4 UniProtKB/Swiss-Prot
  Q86WD3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-13 RIC8B  RIC8 guanine nucleotide exchange factor B    resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)  Symbol and/or name change 5135510 APPROVED