Serpinb10 (serpin family B member 10) - Rat Genome Database

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Gene: Serpinb10 (serpin family B member 10) Rattus norvegicus
Analyze
Symbol: Serpinb10
Name: serpin family B member 10
RGD ID: 628853
Description: Enables peptidase inhibitor activity. Involved in negative regulation of proteolysis. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in extracellular space. Orthologous to human SERPINB10 (serpin family B member 10); PARTICIPATES IN Entamoebiasis pathway; INTERACTS WITH acrylamide; ammonium chloride; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10; serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10; serpin B10; serpin peptidase inhibitor, clade B (ovalbumin), member 10; TGF-beta-repressible serine proteinase inhibitor; transforming growth factor beta repressible serpin; Trespin
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81324,067,971 - 24,085,814 (+)NCBIGRCr8
mRatBN7.21323,553,348 - 23,571,182 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1323,553,430 - 23,571,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1323,923,746 - 23,941,500 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01325,208,206 - 25,225,958 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01323,893,933 - 23,911,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01327,466,036 - 27,483,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1327,465,930 - 27,483,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01332,615,876 - 32,633,626 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41313,644,626 - 13,662,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11313,619,235 - 13,636,986 (+)NCBI
Celera1323,398,735 - 23,416,948 (+)NCBICelera
Cytogenetic Map13p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
extracellular space  (IBA,IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of a novel rat ov-serpin family member, trespin. Chipuk JE, etal., J Biol Chem 2002 Jul 19;277(29):26412-21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12651162   PMID:15489334  


Genomics

Comparative Map Data
Serpinb10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81324,067,971 - 24,085,814 (+)NCBIGRCr8
mRatBN7.21323,553,348 - 23,571,182 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1323,553,430 - 23,571,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1323,923,746 - 23,941,500 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01325,208,206 - 25,225,958 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01323,893,933 - 23,911,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01327,466,036 - 27,483,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1327,465,930 - 27,483,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01332,615,876 - 32,633,626 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41313,644,626 - 13,662,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11313,619,235 - 13,636,986 (+)NCBI
Celera1323,398,735 - 23,416,948 (+)NCBICelera
Cytogenetic Map13p11NCBI
SERPINB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381863,907,958 - 63,936,111 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1863,907,958 - 63,936,111 (+)EnsemblGRCh38hg38GRCh38
GRCh371861,575,192 - 61,603,345 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361859,733,725 - 59,753,456 (+)NCBINCBI36Build 36hg18NCBI36
Build 341859,733,724 - 59,753,456NCBI
Celera1858,303,195 - 58,322,926 (+)NCBICelera
Cytogenetic Map18q22.1NCBI
HuRef1858,283,872 - 58,303,602 (+)NCBIHuRef
CHM1_11861,578,935 - 61,598,658 (+)NCBICHM1_1
T2T-CHM13v2.01864,113,032 - 64,141,170 (+)NCBIT2T-CHM13v2.0
Serpinb10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391107,456,724 - 107,488,469 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1107,456,757 - 107,477,001 (+)EnsemblGRCm39 Ensembl
GRCm381107,528,994 - 107,560,742 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1107,529,003 - 107,549,271 (+)EnsemblGRCm38mm10GRCm38
MGSCv371109,425,580 - 109,445,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361109,356,550 - 109,374,775 (+)NCBIMGSCv36mm8
Celera1110,367,621 - 110,387,897 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.34NCBI
SERPINB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21781,412,650 - 81,441,367 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11867,106,752 - 67,133,985 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01857,262,514 - 57,289,744 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11860,573,607 - 60,600,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1860,573,580 - 60,599,697 (+)Ensemblpanpan1.1panPan2
SERPINB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,233,715 - 13,256,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,234,402 - 13,256,238 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha114,194,436 - 14,217,040 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,088,789 - 13,111,392 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,089,377 - 13,111,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,127,369 - 13,149,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,056,624 - 13,079,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,305,669 - 13,328,274 (-)NCBIUU_Cfam_GSD_1.0
LOC101971699
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494426,543,128 - 26,561,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364971,782,116 - 1,800,307 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364971,782,142 - 1,797,968 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPINB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1157,841,510 - 157,866,913 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11157,841,487 - 157,866,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,328,930 - 175,354,354 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SERPINB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11815,878,552 - 15,903,891 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1815,878,191 - 15,894,609 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660609,790,738 - 9,814,961 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Serpinb10
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:13
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000003314
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat

Markers in Region
BB233602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21323,571,019 - 23,571,134 (+)MAPPERmRatBN7.2
Rnor_6.01327,483,627 - 27,483,741NCBIRnor6.0
Rnor_5.01332,633,464 - 32,633,578UniSTSRnor5.0
RGSC_v3.41313,662,214 - 13,662,328UniSTSRGSC3.4
Celera1323,416,786 - 23,416,900UniSTS
Celera1323,416,323 - 23,416,900UniSTS
Cytogenetic Map13p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
4 2 42 86 73 77 47 25 47 6 161 79 70 29 45 30

Sequence


Ensembl Acc Id: ENSRNOT00000003314   ⟹   ENSRNOP00000003314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1323,553,430 - 23,571,182 (+)Ensembl
Rnor_6.0 Ensembl1327,465,930 - 27,483,799 (+)Ensembl
RefSeq Acc Id: NM_153733   ⟹   NP_714955
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81324,068,053 - 24,085,803 (+)NCBI
mRatBN7.21323,553,430 - 23,571,182 (+)NCBI
Rnor_6.01327,466,036 - 27,483,789 (+)NCBI
Rnor_5.01332,615,876 - 32,633,626 (+)NCBI
RGSC_v3.41313,644,626 - 13,662,376 (+)RGD
Celera1323,398,735 - 23,416,948 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090410   ⟹   XP_038946338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81324,067,971 - 24,085,814 (+)NCBI
mRatBN7.21323,553,348 - 23,570,679 (+)NCBI
Protein Sequences
Protein RefSeqs NP_714955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946338 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH61735 (Get FASTA)   NCBI Sequence Viewer  
  AAL78042 (Get FASTA)   NCBI Sequence Viewer  
  EDL91758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003314.3
GenBank Protein Q8K3K4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_714955   ⟸   NM_153733
- UniProtKB: A6JSW0 (UniProtKB/TrEMBL),   G3V6B2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003314   ⟸   ENSRNOT00000003314
RefSeq Acc Id: XP_038946338   ⟸   XM_039090410
- Peptide Label: isoform X1
Protein Domains
SERPIN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3K4-F1-model_v2 AlphaFold Q8K3K4 1-397 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698756
Promoter ID:EPDNEW_R9280
Type:initiation region
Name:Serpinb10_1
Description:serpin family B member 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01327,466,022 - 27,466,082EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628853 AgrOrtholog
BioCyc Gene G2FUF-18578 BioCyc
Ensembl Genes ENSRNOG00000002417 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003314.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5598648 IMAGE-MGC_LOAD
InterPro Serpin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:266775 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72283 IMAGE-MGC_LOAD
NCBI Gene 266775 ENTREZGENE
PANTHER PTHR11461 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERPIN B10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Serpin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Serpinb10 PhenoGen
PROSITE SERPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002417 RatGTEx
SMART SERPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6JSW0 ENTREZGENE, UniProtKB/TrEMBL
  G3V6B2 ENTREZGENE, UniProtKB/TrEMBL
  Q8K3K4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6P7C1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-13 Serpinb10  serpin family B member 10  Serpinb10  serpin peptidase inhibitor, clade B (ovalbumin), member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-01-19 Serpinb10  serpin peptidase inhibitor, clade B (ovalbumin), member 10  Serpinb10  serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Serpinb10  serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10    serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10  Name updated 1299863 APPROVED
2004-09-10 Serpinb10  serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10      Symbol and Name status set to approved 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain, heart, kidney, liver, lung, prostate, skin, spleen, and stomach 634009
gene_regulation transcription is down-regulated by TGF-beta 634009