Pnrc1 (proline-rich nuclear receptor coactivator 1) - Rat Genome Database

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Gene: Pnrc1 (proline-rich nuclear receptor coactivator 1) Rattus norvegicus
Analyze
Symbol: Pnrc1
Name: proline-rich nuclear receptor coactivator 1
RGD ID: 628753
Description: Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be active in P-body and nucleus. Orthologous to human PNRC1 (proline rich nuclear receptor coactivator 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102556064; Prol2; proline rich 2; proline-rich protein 2; uncharacterized LOC102556064
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8552,443,400 - 52,489,303 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl552,443,400 - 52,446,491 (-)EnsemblGRCr8
mRatBN7.2547,647,070 - 47,657,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl547,647,071 - 47,650,161 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx549,797,168 - 49,800,257 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0551,396,352 - 51,399,441 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0551,339,769 - 51,342,858 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0548,501,472 - 48,504,511 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl548,501,472 - 48,504,511 (-)Ensemblrn6Rnor6.0
Rnor_5.0553,083,531 - 53,086,570 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4549,544,328 - 49,547,367 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera546,406,810 - 46,409,849 (-)NCBICelera
RGSC_v3.1549,544,521 - 49,547,546 (-)NCBI
Cytogenetic Map5q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
biochanin A  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
chromium(6+)  (ISO)
ciglitazone  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indole-3-methanol  (EXP)
inulin  (ISO)
irinotecan  (ISO)
kenpaullone  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
Licochalcone B  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-acetyl-L-cysteine  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-methylformamide  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (EXP)
nickel dichloride  (ISO)
niclosamide  (ISO)
nimesulide  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (EXP,ISO)
rotenone  (EXP,ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Generation of a rat bronchiolar epithelial cell cDNA library: isolation of a proline rich protein highly enriched in bronchiolar epithelial cells. Bingle CD Biochem Biophys Res Commun 1996 Aug 23;225(3):877-82.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Pnrc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8552,443,400 - 52,489,303 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl552,443,400 - 52,446,491 (-)EnsemblGRCr8
mRatBN7.2547,647,070 - 47,657,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl547,647,071 - 47,650,161 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx549,797,168 - 49,800,257 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0551,396,352 - 51,399,441 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0551,339,769 - 51,342,858 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0548,501,472 - 48,504,511 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl548,501,472 - 48,504,511 (-)Ensemblrn6Rnor6.0
Rnor_5.0553,083,531 - 53,086,570 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4549,544,328 - 49,547,367 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera546,406,810 - 46,409,849 (-)NCBICelera
RGSC_v3.1549,544,521 - 49,547,546 (-)NCBI
Cytogenetic Map5q21NCBI
PNRC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38689,080,751 - 89,085,160 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl689,080,751 - 89,085,160 (+)Ensemblhg38GRCh38
GRCh37689,790,470 - 89,794,879 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36689,847,216 - 89,851,598 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34689,847,215 - 89,851,598NCBI
Celera690,208,316 - 90,212,762 (+)NCBICelera
Cytogenetic Map6q15NCBI
HuRef687,006,056 - 87,010,503 (+)NCBIHuRef
CHM1_1689,888,386 - 89,892,850 (+)NCBICHM1_1
T2T-CHM13v2.0690,289,414 - 90,293,820 (+)NCBIT2T-CHM13v2.0
Pnrc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39433,245,423 - 33,248,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl433,245,423 - 33,290,163 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38433,245,423 - 33,248,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl433,245,423 - 33,290,163 (-)Ensemblmm10GRCm38
MGSCv37433,332,398 - 33,335,762 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36433,573,848 - 33,577,123 (-)NCBIMGSCv36mm8
Celera432,996,763 - 33,000,127 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map414.75NCBI
Pnrc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541115,837,747 - 15,840,641 (+)Ensembl
ChiLan1.0NW_00495541115,837,491 - 15,841,277 (+)NCBIChiLan1.0ChiLan1.0
PNRC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25109,155,234 - 109,162,240 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16107,055,308 - 107,062,324 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0686,952,996 - 86,957,772 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1690,228,759 - 90,233,465 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl690,229,145 - 90,233,465 (+)EnsemblpanPan2panpan1.1
PNRC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11248,339,946 - 48,344,026 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1248,339,346 - 48,415,732 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1248,147,075 - 48,151,164 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01249,145,758 - 49,149,868 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1249,145,782 - 49,149,869 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11248,465,046 - 48,469,146 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01248,363,458 - 48,367,560 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01248,555,454 - 48,559,556 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pnrc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494683,358,097 - 83,361,754 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365103,107,147 - 3,112,813 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365103,109,114 - 3,112,616 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNRC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,128,303 - 57,136,135 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1157,128,100 - 57,132,071 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2163,827,091 - 63,828,185 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNRC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11313,846,691 - 13,850,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1313,846,864 - 13,850,141 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040190,163,279 - 190,167,376 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnrc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247995,097,809 - 5,100,507 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247995,097,175 - 5,100,692 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pnrc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11109,784,828 - 109,788,439 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pnrc1
218 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:55
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000010271
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010271   ⟹   ENSRNOP00000010271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl552,443,400 - 52,446,491 (-)Ensembl
mRatBN7.2 Ensembl547,647,071 - 47,650,161 (-)Ensembl
Rnor_6.0 Ensembl548,501,472 - 48,504,511 (-)Ensembl
RefSeq Acc Id: NM_173322   ⟹   NP_775444
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8552,443,400 - 52,446,491 (-)NCBI
mRatBN7.2547,647,070 - 47,650,161 (-)NCBI
Rnor_6.0548,501,472 - 48,504,511 (-)NCBI
Rnor_5.0553,083,531 - 53,086,570 (-)NCBI
RGSC_v3.4549,544,328 - 49,547,367 (-)RGD
Celera546,406,810 - 46,409,849 (-)RGD
Sequence:
RefSeq Acc Id: XM_039109351   ⟹   XP_038965279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8552,443,402 - 52,489,303 (-)NCBI
mRatBN7.2547,647,072 - 47,657,832 (-)NCBI
Protein Sequences
Protein RefSeqs NP_775444 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965279 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB09057 (Get FASTA)   NCBI Sequence Viewer  
  EDL98585 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010271
GenBank Protein Q63647 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775444   ⟸   NM_173322
- UniProtKB: Q63647 (UniProtKB/Swiss-Prot),   R9PXT3 (UniProtKB/TrEMBL),   A6IIL5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010271   ⟸   ENSRNOT00000010271
RefSeq Acc Id: XP_038965279   ⟸   XM_039109351
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63647-F1-model_v2 AlphaFold Q63647 1-296 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693615
Promoter ID:EPDNEW_R4139
Type:multiple initiation site
Name:Pnrc1_1
Description:proline-rich nuclear receptor coactivator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0548,504,534 - 48,504,594EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628753 AgrOrtholog
BioCyc Gene G2FUF-41695 BioCyc
Ensembl Genes ENSRNOG00000007793 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000010271 ENTREZGENE
InterPro PNRC-like_rgn UniProtKB/Swiss-Prot
  PNRC1/2 UniProtKB/Swiss-Prot
KEGG Report rno:286988 UniProtKB/Swiss-Prot
NCBI Gene 286988 ENTREZGENE
PANTHER PTHR15405 UniProtKB/Swiss-Prot
Pfam PNRC UniProtKB/Swiss-Prot
PhenoGen Pnrc1 PhenoGen
RatGTEx ENSRNOG00000007793 RatGTEx
UniProt A6IIL5 ENTREZGENE, UniProtKB/TrEMBL
  PNRC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  R9PXT3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pnrc1  proline-rich nuclear receptor coactivator 1  LOC102556064  uncharacterized LOC102556064  Data merged from RGD:7544320 737654 PROVISIONAL
2013-12-17 LOC102556064  uncharacterized LOC102556064      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-22 Pnrc1  proline-rich nuclear receptor coactivator 1  Pnrc1  proline rich 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Pnrc1  proline rich 2  Prol2    Symbol and Name updated 1299863 APPROVED
2003-02-27 Prol2  proline rich 2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_transcript 29.5 kd 633810