Pnrc1 (proline rich nuclear receptor coactivator 1)

Gene: Pnrc1 (proline rich nuclear receptor coactivator 1) Chinchilla lanigera

Analyze

Symbol:

Pnrc1

Name:

proline rich nuclear receptor coactivator 1

RGD ID:

8819306

Description:

ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline-rich nuclear receptor coactivator 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	15,837,747 - 15,840,641 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	15,837,491 - 15,841,277 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Pnrc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	15,837,747 - 15,840,641 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	15,837,491 - 15,841,277 (+)	NCBI	ChiLan1.0	ChiLan1.0

PNRC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	89,080,751 - 89,085,160 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	89,080,751 - 89,085,160 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	89,790,470 - 89,794,879 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	89,847,216 - 89,851,598 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	89,847,215 - 89,851,598	NCBI
Celera	6	90,208,316 - 90,212,762 (+)	NCBI		Celera
Cytogenetic Map	6	q15	NCBI
HuRef	6	87,006,056 - 87,010,503 (+)	NCBI		HuRef
CHM1_1	6	89,888,386 - 89,892,850 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	90,289,414 - 90,293,820 (+)	NCBI		T2T-CHM13v2.0

Pnrc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	33,245,423 - 33,248,787 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	33,245,423 - 33,290,163 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	33,245,423 - 33,248,787 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	33,245,423 - 33,290,163 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	33,332,398 - 33,335,762 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	33,573,848 - 33,577,123 (-)	NCBI		MGSCv36	mm8
Celera	4	32,996,763 - 33,000,127 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	14.75	NCBI

Pnrc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	52,443,400 - 52,489,303 (-)	NCBI		GRCr8
mRatBN7.2	5	47,647,070 - 47,657,832 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	47,647,071 - 47,650,161 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	49,797,168 - 49,800,257 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	51,396,352 - 51,399,441 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	51,339,769 - 51,342,858 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	48,501,472 - 48,504,511 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	48,501,472 - 48,504,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	53,083,531 - 53,086,570 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	49,544,328 - 49,547,367 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	49,544,521 - 49,547,546 (-)	NCBI
Celera	5	46,406,810 - 46,409,849 (-)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

PNRC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	109,155,234 - 109,162,240 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	107,055,308 - 107,062,324 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	86,952,996 - 86,957,772 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	90,228,759 - 90,233,465 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	90,229,145 - 90,233,465 (+)	Ensembl	panpan1.1		panPan2

PNRC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	48,339,946 - 48,344,026 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	48,339,346 - 48,415,732 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	48,147,075 - 48,151,164 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	49,145,758 - 49,149,868 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	12	48,465,046 - 48,469,146 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	48,363,458 - 48,367,560 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	48,555,454 - 48,559,556 (+)	NCBI		UU_Cfam_GSD_1.0

Pnrc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	83,358,097 - 83,361,754 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	3,107,147 - 3,112,813 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	3,109,114 - 3,112,616 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNRC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	57,128,303 - 57,136,135 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	57,128,100 - 57,132,071 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	63,827,091 - 63,828,185 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PNRC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	13,846,691 - 13,850,785 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	13,846,864 - 13,850,141 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	190,163,279 - 190,167,376 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pnrc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	5,097,809 - 5,100,507 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624799	5,097,175 - 5,100,692 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013510921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01011952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01011953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01303221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01006301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000018122 ⟹ ENSCLAP00000017944

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955411	15,837,747 - 15,840,641 (+)	Ensembl

RefSeq Acc Id:

XM_013510921 ⟹ XP_013366375

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955411	15,837,491 - 15,841,277 (+)	NCBI

Sequence:

show sequence

GGCCATGGAGGAGGCGCCCGAGGGGCGGGGCTTCCTCGTCGCCCTCGGATTGGGGGTTAGCAGG
GGGTGGGCGGGGTCGGGGCGGGGCCTCCGACAACAACACTGGGAACCCAGACCCTGGCTATTTG
TTGCTGCGCCGCCTCCGCCCGAGTCATGTTCTACGCTCCCCCGTGGCTCGCAGCAGCAACCGCC
GCCGCTCGGTGATCACAGGCTTCACTTCCTCCTCTTCCTGCCGAGCCTCCGGACTCCTAGCACT
ATGACTGTCGTCTCTGTCCCGCAGCGGGAGCCGCTCGTCTTGGGCGGCCGTCTTGGGCCGCTTG
GCTTCTCTGCCCGCGCTTACTTCGGGGCCCTCCCGATGGTGACCTCGGCCCCGCCGCCTGTGCC
CCGGATCCCAGACCCTCGGGCGCTGCCCCCGACTCTCTTCCTCCCTCACTTCCTGGGGGGAGAC
GGGCCCTGCCTGGCCCCACAGCCCCGCGCCCCAGCAGCAGCTCTGCCCCACTGCAGCCCGGCCG
TGGCGGGAGGCGCCCCGCGGGCGGCTCCGAAGAAGCGGCGGAAGAAGAAGGTGCGAGCCAGCCC
GGCGGGGCAGCTGCCCAGTCGCTTCCAGCAGTATCAGCAGCACCGGCCGAACCTGGACGGCGGC
CGCAGCTCGGGCACGGCCCCGGCCCCGGCCCCCGCCGCCGCCTCGGCCCCGGGCCCAGCGTCCG
CAGCCCCGGCTGAGGGAGTGAGCCTGCTGCCCGGGCCGCTGCGGCCCGCGCCGCCGAGCCAAGC
CCCGCTCAGGAAGGAGGTCTTAAAATCAAAGATGGGAAAATCGGAGAAAATTGCCCTTCCCCAC
GGCCAACTTGTTCATGGTATACACTTGTGTGAACAACCAAAGACAAACAGACAGAAAAGCAAAT
ATAACTTGCCACTAACCAAGATCACCTCTACAAAAAGGAATGAAAATAACTTTTGGCAGGATTC
TGTTTCGCCTGATGGAATTCAGAAGCAGGAAAAAAAGCCTTTTAAAAATACTGAAAACATTAAA
AATATGCATTTGAAGAAATCAGCATTTCTTACTGAAGTGAGCCAAAAGGAAAATTACGCTGGGG
CAAAGTTCAGTGATCCGCCTTCTCCCAGTGTTCTTCCAAAGCCGCCTAGTCACTGGATGGGAAG
CACTATTGAAAATTCCATTCAGAATAGGGAGCTGATGGCAGTACACTTAAAAACGCTCCTGAAA
GTTCAAACTTAGATTTTAGTATGTATGTAAAACATAGTTTTTCCCAAATCCCTGGACTCTTTAA
AAGAAAATTGGTACGAAAGTGGAAATTTGTACCATTCAAGTGCAAAAGATGAGTTTAGAGTTAC
ATACAGCTTGTATTTTATATTTTGTAAATACTGTATACCATGTATTATGTGTATATTGTTCATA
TTTGAGAGGTACATTATAGTTTTGTTATGAAAGTATGTATTTTGCCCTGCCAGTGTGGTAGGTG
TTTTGTATATATAGTGGACAAATTTTAACTGTGCTAAGGCACATGGAAGACTGATTTATTTGCA
CAAGGTACTAAGAGATTTTTTTCAAGAAACAGCTGTTAAATCTCAAAGTGAAGATCTAAATGTG
AATGGTTTATTAATGCACTACTGAAGTTTAAATCTGTGGCACAATCATTGTAAACATGGGGTTT
GTCTGTGTTTCTCTAATTGATTTCTGCCTTCTAATCTGTAATTGTTGGAAAATTCCTGTTCTCA
TTTTTACCAAACTTAATTTGTGGGTTTTGGTATATAGCCATTATTCAAATTCAAAATGTCTCTA
ATTTTAATGCCAACAGAATTGGTTGTAATCAAATTTTAAAGTAATAATAATTTGACCCTCCCCC
CTTTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013366375	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017944.1

RefSeq Acc Id:

XP_013366375 ⟸ XM_013510921

- Sequence:

show sequence

MEEAPEGRGFLVALGLGVSRGWAGSGRGLRQQHWEPRPWLFVAAPPPPESCSTLPRGSQQQPPP
LGDHRLHFLLFLPSLRTPSTMTVVSVPQREPLVLGGRLGPLGFSARAYFGALPMVTSAPPPVPR
IPDPRALPPTLFLPHFLGGDGPCLAPQPRAPAAALPHCSPAVAGGAPRAAPKKRRKKKVRASPA
GQLPSRFQQYQQHRPNLDGGRSSGTAPAPAPAAASAPGPASAAPAEGVSLLPGPLRPAPPSQAP
LRKEVLKSKMGKSEKIALPHGQLVHGIHLCEQPKTNRQKSKYNLPLTKITSTKRNENNFWQDSV
SPDGIQKQEKKPFKNTENIKNMHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHWMGST
IENSIQNRELMAVHLKTLLKVQT

hide sequence

RefSeq Acc Id:

ENSCLAP00000017944 ⟸ ENSCLAT00000018122

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012309	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018122.1	UniProtKB/TrEMBL
InterPro	PNRC1/2	UniProtKB/TrEMBL
NCBI Gene	Pnrc1	ENTREZGENE
PANTHER	PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR 1	UniProtKB/TrEMBL
	PTHR15405	UniProtKB/TrEMBL
Pfam	PNRC	UniProtKB/TrEMBL
UniProt	A0A8C2YRI1_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Pnrc1	proline rich nuclear receptor coactivator 1		proline-rich nuclear receptor coactivator 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD