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Gene: Elavl2 (ELAV like RNA binding protein 2) Rattus norvegicus

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Symbol:

Elavl2

Name:

ELAV like RNA binding protein 2

RGD ID:

628611

Description:

Predicted to enable RNA binding activity. Involved in regulation of synapse assembly. Is active in cerebellar granule cell to Purkinje cell synapse. Orthologous to human ELAVL2 (ELAV like RNA binding protein 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B); ELAV like neuron-specific RNA binding protein 2; ELAV-like protein 2; Elav2; embryonic lethal, abnormal vision-like 2; hu-antigen B; Hub; LOC360404; RNA binding protein HuB

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELAVL2 (ELAV like RNA binding protein 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Treefam
Mus musculus (house mouse):	Elavl2 (ELAV like RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elavl2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELAVL2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELAVL2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elavl2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELAVL2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELAVL2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elavl2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Elavl2 (ELAV like RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ELAVL3 (ELAV like RNA binding protein 3)	HGNC	OrthoDB
Homo sapiens (human):	NOX4 (NADPH oxidase 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ELAVL2 (ELAV like RNA binding protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elavl2 (ELAV like RNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elavl2 (ELAV like neuron-specific RNA binding protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	fne	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rbp9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rbp9	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	exc-7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	exc-7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	elavl2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	111,076,705 - 111,202,341 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	111,076,705 - 111,224,918 (-)	Ensembl				GRCr8
mRatBN7.2	5	105,960,872 - 106,086,463 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	105,960,875 - 106,109,097 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	108,437,901 - 108,563,548 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	110,167,512 - 110,293,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	110,225,899 - 110,351,548 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	109,499,410 - 109,651,829 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	109,499,408 - 109,651,730 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	113,450,847 - 113,601,141 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	111,178,875 - 111,304,980 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	104,638,371 - 104,764,344 (-)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

lung small cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

4-vinylcyclohexene dioxide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

amitrole (EXP)

ammonium chloride (EXP)

aripiprazole (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chromium(6+) (ISO)

copper atom (ISO)

copper(0) (ISO)

cordycepin (ISO)

Cuprizon (EXP)

decabromodiphenyl ether (EXP)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dioxygen (ISO)

entinostat (ISO)

fenamidone (ISO)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

geraniol (ISO)

hydroquinone (ISO)

lead(0) (ISO)

menadione (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (ISO)

paracetamol (EXP)

PCB138 (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to leukemia inhibitory factor (ISO)

regulation of synapse assembly (IDA,IMP)

Cellular Component

cerebellar granule cell to Purkinje cell synapse (IDA,IMP)

ribonucleoprotein complex (IEA)

synapse (ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

protein-RNA adaptor activity (IBA)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Information Derived from GenBank Report	RGD, Sept. 2003
6.	Promoter decommissioning by the NuRD chromatin remodeling complex triggers synaptic connectivity in the mammalian brain.	Yamada T, etal., Neuron. 2014 Jul 2;83(1):122-34. doi: 10.1016/j.neuron.2014.05.039.

Additional References at PubMed

PMID:8889548	PMID:17534028	PMID:19115409	PMID:20439489	PMID:21139978	PMID:22658674	PMID:22681889	PMID:22871113	PMID:28252024	PMID:29476059	PMID:31696225

Genomics

Comparative Map Data

Elavl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	111,076,705 - 111,202,341 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	111,076,705 - 111,224,918 (-)	Ensembl				GRCr8
mRatBN7.2	5	105,960,872 - 106,086,463 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	105,960,875 - 106,109,097 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	108,437,901 - 108,563,548 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	110,167,512 - 110,293,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	110,225,899 - 110,351,548 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	109,499,410 - 109,651,829 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	109,499,408 - 109,651,730 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	113,450,847 - 113,601,141 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	111,178,875 - 111,304,980 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	104,638,371 - 104,764,344 (-)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI

ELAVL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	23,690,104 - 23,850,601 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	23,690,099 - 23,826,352 (-)	Ensembl			hg38	GRCh38
GRCh37	9	23,690,102 - 23,850,599 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	23,680,102 - 23,816,063 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	23,681,983 - 23,816,301	NCBI
Celera	9	23,612,711 - 23,748,673 (-)	NCBI		Celera
Cytogenetic Map	9	p21.3	NCBI
HuRef	9	23,638,458 - 23,774,406 (-)	NCBI		HuRef
CHM1_1	9	23,689,866 - 23,825,861 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	23,696,100 - 23,856,586 (-)	NCBI		T2T-CHM13v2.0

Elavl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	91,099,770 - 91,288,407 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	91,139,000 - 91,289,022 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	91,211,533 - 91,400,108 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	91,250,763 - 91,400,785 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	90,917,457 - 91,066,675 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	90,742,784 - 90,892,002 (-)	NCBI		MGSCv36	mm8
Celera	4	89,703,358 - 89,852,432 (-)	NCBI		Celera
Cytogenetic Map	4	C5	NCBI
cM Map	4	42.36	NCBI

Elavl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	10,549,986 - 10,710,774 (+)	Ensembl
ChiLan1.0	NW_004955472	10,550,138 - 10,710,756 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELAVL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	100,688,895 - 100,849,891 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	100,694,841 - 100,855,837 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	23,543,090 - 23,703,634 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	24,155,627 - 24,315,255 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	24,155,627 - 24,230,254 (-)	Ensembl			panPan2	panpan1.1

ELAVL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	42,504,205 - 42,647,093 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	42,506,381 - 42,671,284 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	41,182,601 - 41,325,292 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	43,444,501 - 43,587,493 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	43,444,233 - 43,587,479 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	42,116,176 - 42,258,890 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	42,004,575 - 42,147,332 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	42,750,401 - 42,893,306 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Elavl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	157,354,147 - 157,507,805 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936827	878,536 - 1,032,199 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936827	878,632 - 1,002,034 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELAVL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	198,964,132 - 199,135,811 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	198,964,070 - 199,135,815 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	222,013,128 - 222,092,572 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELAVL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	12	56,103,376 - 56,238,614 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Elavl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	27,692,201 - 27,882,787 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624736	27,554,445 - 27,884,382 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Elavl2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	62,004,477 - 62,129,252 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Elavl2
892 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	397
Count of miRNA genes:	217
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000009034
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	73779642	118779642	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	84630798	129630798	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	84630798	129630798	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1582212	Livw2	Liver weight QTL 2	3.5	0.0004	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	5	104018576	124314782	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	92583776	137583776	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
7394708	Emca11	Estrogen-induced mammary cancer QTL 11			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	73176602	118176602	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84630798	129630798	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	69474415	114474415	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	95062526	133270832	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1600362	Mcs19	Mammary carcinoma susceptibility QTL 19	2.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	82032155	127032155	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	89369373	134369373	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	69835120	114835120	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	97492524	133270832	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	73779642	118779642	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	95062526	133270832	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	92881678	137881678	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

U29088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	5	113,453,643 - 113,453,794	NCBI	Rnor5.0
RGSC_v3.4	5	111,181,108 - 111,181,258	UniSTS	RGSC3.4
Celera	5	104,640,604 - 104,640,754	UniSTS
Cytogenetic Map	5	q32	UniSTS

PMC337033P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	105,962,737 - 105,962,962 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	105,962,787 - 105,962,962 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	105,962,737 - 105,963,351 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	109,501,276 - 109,502,064	NCBI	Rnor6.0
Rnor_6.0	5	109,501,276 - 109,501,500	NCBI	Rnor6.0
Rnor_5.0	5	113,452,713 - 113,453,501	UniSTS	Rnor5.0
Rnor_5.0	5	113,452,713 - 113,452,937	UniSTS	Rnor5.0
RGSC_v3.4	5	111,180,741 - 111,180,965	UniSTS	RGSC3.4
Celera	5	104,640,237 - 104,640,461	UniSTS
Cytogenetic Map	5	q32	UniSTS

Elavl4

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	105,962,376 - 105,962,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	109,500,915 - 109,501,073	NCBI	Rnor6.0
Rnor_5.0	5	113,452,352 - 113,452,510	UniSTS	Rnor5.0
RGSC_v3.4	5	111,180,380 - 111,180,538	UniSTS	RGSC3.4
Celera	5	104,639,876 - 104,640,034	UniSTS
Cytogenetic Map	5	q32	UniSTS

ELAVL2__7577

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	105,962,550 - 105,963,498 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	109,501,089 - 109,502,600	NCBI	Rnor6.0
Rnor_5.0	5	113,452,526 - 113,454,037	UniSTS	Rnor5.0
RGSC_v3.4	5	111,180,554 - 111,181,501	UniSTS	RGSC3.4
Celera	5	104,640,050 - 104,640,997	UniSTS
Cytogenetic Map	5	q32	UniSTS

Elavl2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	105,962,786 - 105,963,428 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	105,962,958 - 105,963,428 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	109,501,497 - 109,502,530	NCBI	Rnor6.0
Rnor_6.0	5	109,502,061 - 109,502,530	NCBI	Rnor6.0
Rnor_5.0	5	113,453,498 - 113,453,967	UniSTS	Rnor5.0
Rnor_5.0	5	113,452,934 - 113,453,967	UniSTS	Rnor5.0
RGSC_v3.4	5	111,180,962 - 111,181,431	UniSTS	RGSC3.4
Celera	5	104,640,458 - 104,640,927	UniSTS
Cytogenetic Map	5	q32	UniSTS

Elavl2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	105,963,428 - 105,963,494 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	109,502,531 - 109,502,596	NCBI	Rnor6.0
Rnor_5.0	5	113,453,968 - 113,454,033	UniSTS	Rnor5.0
RGSC_v3.4	5	111,181,432 - 111,181,497	UniSTS	RGSC3.4
Celera	5	104,640,928 - 104,640,993	UniSTS
Cytogenetic Map	5	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	8	58	136	57	55	26	16	26	4	182	95	4	122	39	90	29	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001302217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB098713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI145457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009034 ⟹ ENSRNOP00000009034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	111,076,705 - 111,202,287 (-)	Ensembl
mRatBN7.2 Ensembl	5	105,960,875 - 106,086,463 (-)	Ensembl
Rnor_6.0 Ensembl	5	109,499,408 - 109,625,723 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092743 ⟹ ENSRNOP00000075983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	111,076,705 - 111,198,190 (-)	Ensembl
mRatBN7.2 Ensembl	5	105,962,304 - 106,021,807 (-)	Ensembl
Rnor_6.0 Ensembl	5	109,499,408 - 109,621,317 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093007 ⟹ ENSRNOP00000076072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	109,530,877 - 109,621,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093032 ⟹ ENSRNOP00000076021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	111,076,705 - 111,224,918 (-)	Ensembl
mRatBN7.2 Ensembl	5	105,960,875 - 106,109,097 (-)	Ensembl
Rnor_6.0 Ensembl	5	109,499,707 - 109,651,730 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105492 ⟹ ENSRNOP00000094592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	111,078,177 - 111,202,287 (-)	Ensembl
mRatBN7.2 Ensembl	5	105,962,304 - 106,086,463 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156565 ⟹ ENSRNOP00000105724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	111,076,705 - 111,198,190 (-)	Ensembl

RefSeq Acc Id:

NM_001302217 ⟹ NP_001289146

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,202,287 (-)	NCBI
mRatBN7.2	5	105,960,872 - 106,086,463 (-)	NCBI
Rnor_6.0	5	109,499,410 - 109,625,799 (-)	NCBI
Celera	5	104,638,371 - 104,764,344 (-)	NCBI

Sequence:

show sequence

GTATACTTCCGCGCGTGCTGCCCGGGATAGGACTCTGGCAGAGCAGCTGCACACACGGCAGTGC
GGAGGCAGAGAAGGGGTTGGTGATACGGTGCTATAAATCTGTGGTCCAGTCCACCTCCCTTTTA
AGACGTCCTCCCCCCTTATTTCTGTTCTCACTTAGAGATGCAGCAGCTTACTTCTGTAGCGACC
TACTAAAAAGCAACACGGAGAAAGACATCGTCTTTTTGAAAAAACGTTCTTTCGTCTCTTTTCT
TTGTTCCTTGGTTTGTTTTTCTTGCACCTTTTTGTTTAGTTGAACGGCAATAGGAGTAGTCTCT
CCGTCTTTTTAAACTCTCTTTTTTAAGTTTCCCCTCCCCTTTCATATTTTTTTCATCATTTCTT
TTAGCATTGGACTTTGGGGTCGAAAGCATTTCTTTTTATTTGCTTCTTTTAAGCCGAGCACAGT
TTAGGTTTCGTGCTGTCTTAAGAGAACTATCCAGCAGCTTCTTGCTCATCCTTATTGGGAGAAC
TGCACCGTTACTTTAAAAATACACACACACAAAAACCTTAAGGGAGAAAGACGGCAACTCCAAA
CTAACATGGCAGTCAGACTGTGTGATGTGGCTTCTCTGCTTAGAAGCGGTTCGTGGGCAGCAGA
GCCTTGGACCGGGCAGGTAATTGCTGCCATGGAAACACAACTGTCTAATGGGCCAACTTGCAAT
AACACAGCCAATGGTCCAACCACTGTAAACAACAACTGCTCCTCACCAGTTGACTCCGGGAACA
CAGAGGACAGCAAGACCAACCTAATAGTCAACTACCTTCCTCAGAACATGACACAGGAAGAACT
AAAGAGTCTTTTTGGGAGCATTGGCGAGATTGAGTCCTGTAAGCTTGTAAGAGACAAAATAACA
GGGCAGAGCTTGGGTTACGGCTTTGTGAACTACATTGATCCCAAGGATGCAGAGAAAGCGATCA
ACACTCTGAATGGATTGAGACTTCAAACCAAAACAATAAAAGTTTCCTATGCTCGTCCAAGTTC
AGCTTCTATCAGAGATGCAAACTTATATGTCAGTGGTCTTCCAAAAACCATGACCCAGAAGGAG
CTGGAGCAGCTGTTTTCACAGTATGGGCGCATCATTACTTCTCGGATTCTTGTCGACCAGGTCA
CTGGCATATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGGATTGAGGCAGAAGAAGCTAT
CAAAGGCCTAAATGGCCAGAAACCTCCTGGTGCCACAGAGCCAATCACTGTAAAGTTTGCTAAT
AATCCAAGCCAAAAAACCAATCAGGCCATCCTGTCCCAGCTGTACCAGTCTCCAAACAGAAGGT
ACCCAGGACCGCTAGCTCAGCAAGCGCAGCGCTTTAGGTTGGACAATCTGCTCAATATGGCTTA
TGGAGTGAAGAGGTTTTCACCAATGACGATTGATGGAATGACCAGTCTGGCTGGAATTAATATT
CCTGGGCACCCTGGAACAGGCTGGTGCATATTTGTGTACAACCTGGCGCCTGATGCAGACGAAA
GTATCCTGTGGCAAATGTTTGGGCCTTTTGGAGCTGTCACCAACGTGAAGGTCATCCGTGACTT
TAACACCAATAAATGCAAAGGTTTTGGATTTGTGACTATGACAAACTATGATGAGGCTGCCATG
GCGATAGCTAGCCTCAATGGATACCGTCTGGGAGACAGAGTACTGCAGGTCTCCTTTAAGACAA
ACAAAACGCACAAAGCCTAATGAGCTCCTGTCCTCAGTCCATTTATATATGAAAACTATACAAC
ACAAGCAAGTTAAGAGAAACTTTATACATTAGTAAATGTCTTTGTAAGTCAGTGTTGAGATGGG
GATAAATGACTACTTAGCATCCTAAGAAATATGTGAGATTTTTTATTGCTAGTATTTGAATTAA
AACTTCTTAAATATCTTTTATGTTTGAATATGGACAAGAGGTACAGGGTTTTTACCTGTCACAT
TGCATTCTATTGCCTTCTTTGAAGAAGGTGGACCTTTTAAAGTGTTTCAGCTAAGGGAAGACAT
TTCTTTTCTTTTTACATAACCGCCTTGAGCCTGTGAGTAAGTACTGAGGCTTTGTGTTGTAGCT
CTTCAGTTGGCTGTCTTTCCCACCTCCTTAGCTTTCCTTCTCTTTCTCCTTATTGTTTTTGTTT
TTTGTTTTTTTTTTCCTTTCCATTCTCTAATTAGCTTTGTGTTTGGTTTACATTTAAAGCATTG
CTGTTATGTCTCAGAAAAGTATTTTGAAGTTTACATTTTTATTTATGAAGTTACAAACAGTATT
TAGCCTAATGAGCTCCTGTCCTCAGTCCATTTATATATGAAAACTATACAACACAAGCAAGTTA
AGAGAAACTTTATACATTAGTAAATGTCTTTGTAAGTCAGTGTTGAGATGGGGATAAATGACTA
CTTAGCATCCTAAGAAATATGTGAGATTTTTTATTGCTAGTATTTGAATTAAAACTTCTTAAAT
ATCTTTTATGTTTGAATATGGACAAGAGGTACAGGGTTTTTACCTGTCACATTGCATTCTATTG
CCTTCTTTGAAGAAGGTGGACCTTTTAAAGTGTTTCAGCTAAGGGAAGACATTTCTTTTCTTTT
TACATAACCGCCTTGAGCCTGTGAGTAAGTACTGAGGCTTTGTGTTGTAGCTCTTCAGTTGGCT
GTCTTTCCCACCTCCTTAGCTTTCCTTCTCTTTCTCCTTATTGTTTTTGTTTTTTGTTTTTTTT
TTCCTTTCCATTCTCTAATTAGCTTTGTGTTTGGTTTACATTTAAAGCATTGCTGTTATGTCTC
AGAAAAGTATTTTGAAGTTTACATTTTTATTTATGAAGTTACAAACAGTATTTATTTTGTAATT
CTGATTTGGGCTGGGGCAGGGGGGGCGACATTATAAACGCTTATTGTAAGAATACTGGAGAACT
TTTCGTAAAGCAGTACCTTGCCAAAGAGATAAGAGCCTCTTTGATGTGGGTTTAAAAAAAGCAT
CTATTTTTATAAAAAAGAAAATTTGGAGAAACTTTTTACTGGTCCTGGAACAAATATTTTGACT
TGAATACTTTGAGAAATCTCTTCATATGACACCTAGTGAGCTTTTAAAATTTACCAGGAAATTT
GCAACGGTTGGAAAATTTAGAAAGATTTATGATGTAGAAAAATACTTTTGAGATCTTTGTATGA
GAGGAATTGAGTCAGTGAGGGAACACTGCTGGTTTCATTTTCGTAATCACCAGTGGGGCGTCTG
ATCATCCTGGTTGTTATGTGATAGATGGCTCACATTGATTTGTGATTTTGAAACAAATAAAAAA
ATTTACAAAAGAATATATAAGAGCAGGCAAGAAATTTAAATTACCAAGAGATGGGGGAAAATCT
GTTCTTCCTAAAGAAATCCCTTCAGATAGAGCTCATGGTGTTTAGTGATGTACTTGCAGTATCG
TTTGAAGAATTGTTTTGTCTTAAGAAAGATGAGATGTTGCACACGTTTGGATTGCAGCAAGTCA
GCAAAGGCGACCTGAGTTGGATATATTTGAAGGCATTTTGAGAGTTATGTTTAAGGCTAACACC
TGAGCTTTGTGTGATGTAAATAAGACCTTGTGTTTATGAACCTTTCAGCTAATTTTATTTTTTT
CCCTTACATATCAAGTGATGTTCAGGTTTTGAATGTTTTGTATCAGTTTTTTTCTTTGTAAATG
GCATTAACATTGTTACCTGAGGTCTTGCTTATTCACTTCTGTTGTCCTGAGGACTTGAATTTAC
AGTGCATCAGATTCGTTGGCTAATTCTGTCTGTAGATAGTCTAGCTTCAGCTGTTTATGGTGAT
GCTACATTTTCGTTTATAAATATGTTTGTGGTAAAAAAAAAGAAAAATGAGTATAACCATAGGT
TTTGAACAAATTTCCTTACATTTTTCATACAAAATCATAAATATCTGTATGCTATTGAAATTTA
ACTTTGTATGATGCTTAAACCACTATTTGGGGAAATAATAAAATAAGTCTTTACCATGTATGAA
AGAAATTTTAAAAAATACAAAATATTTTCTGATTAGCATCTAGCTTATAATAAATTTTCAAAAA
AGCTGAAGGCAACTGTTGCCTTCATCAGGATGCACTGAGAACTATATAGTTACGTCCTGCGTTT
TGTATAAACTGAGATGCTCATATGCTTCCCCTTAGAACAGGCAATGTGCTATGCATAACATAGT
TGTACATTATCTTTGCAGTTGCTTTGAGTTTTATTTTTTATTATTTAAAACTGTAGTTATAAAA
ACTTTTCAGTATAGTGCAGTACATATACTGTGAGGCGCGTGCTGAAGTGAACAAGCGAGTTTTC
ATGCTGACCCACTCAATGCTACTCAGAACTCAATTGGCTTAGCACTTTCTCATATCCTTAGGTG
CATTTAGATTGTCAGAGTTAACCTGCGTTAAAAAAAATAAAATAAAATACATGTATATATTAAA
AAAAATAAGGTTTCCCTTGTGGGAAAACAGCAGCTACACGCTTCTTTCCTGTACTACTGTAGCA
AACCAAGGCATTGATGAGAGGGCATGCAAATTGTGCTTCACTTTACAGTGTTTATCAGAGCACT
TAATAAAATGTAAGGCTGGTATTTATTTGAAGTTGTACAGTATGACTTAATTCCCATCTGTTGG
AATAGAAAATATATTCTGTTGAGTATTTAAGAGGCTGTACATGTTTTCTTTTGTGTTTGGGTTC
TTTGTGCTTTTTCATGTTCGGTACATCAATAAACAAAGTTGAAGGGAAA

hide sequence

RefSeq Acc Id:

XM_063287226 ⟹ XP_063143296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,953 (-)	NCBI

RefSeq Acc Id:

XM_063287227 ⟹ XP_063143297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,953 (-)	NCBI

RefSeq Acc Id:

XM_063287228 ⟹ XP_063143298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,954 (-)	NCBI

RefSeq Acc Id:

XM_063287229 ⟹ XP_063143299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,953 (-)	NCBI

RefSeq Acc Id:

XM_063287230 ⟹ XP_063143300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,953 (-)	NCBI

RefSeq Acc Id:

XM_063287231 ⟹ XP_063143301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,198,852 (-)	NCBI

RefSeq Acc Id:

XM_063287232 ⟹ XP_063143302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,202,341 (-)	NCBI

RefSeq Acc Id:

XM_063287233 ⟹ XP_063143303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,122 (-)	NCBI

RefSeq Acc Id:

XM_063287234 ⟹ XP_063143304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,118 (-)	NCBI

RefSeq Acc Id:

XM_063287235 ⟹ XP_063143305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,198,867 (-)	NCBI

RefSeq Acc Id:

XM_063287236 ⟹ XP_063143306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,127 (-)	NCBI

RefSeq Acc Id:

XM_063287237 ⟹ XP_063143307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,198,781 (-)	NCBI

RefSeq Acc Id:

XM_063287238 ⟹ XP_063143308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,202,341 (-)	NCBI

RefSeq Acc Id:

XM_063287239 ⟹ XP_063143309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,202,341 (-)	NCBI

RefSeq Acc Id:

XM_063287240 ⟹ XP_063143310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,936 (-)	NCBI

RefSeq Acc Id:

XM_063287241 ⟹ XP_063143311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,198,782 (-)	NCBI

RefSeq Acc Id:

XM_063287242 ⟹ XP_063143312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,079,367 - 111,197,954 (-)	NCBI

RefSeq Acc Id:

XM_063287243 ⟹ XP_063143313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,079,371 - 111,197,954 (-)	NCBI

RefSeq Acc Id:

XM_063287244 ⟹ XP_063143314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	111,076,705 - 111,197,642 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001289146	(Get FASTA)	NCBI Sequence Viewer
	XP_063143296	(Get FASTA)	NCBI Sequence Viewer
	XP_063143297	(Get FASTA)	NCBI Sequence Viewer
	XP_063143298	(Get FASTA)	NCBI Sequence Viewer
	XP_063143299	(Get FASTA)	NCBI Sequence Viewer
	XP_063143300	(Get FASTA)	NCBI Sequence Viewer
	XP_063143301	(Get FASTA)	NCBI Sequence Viewer
	XP_063143302	(Get FASTA)	NCBI Sequence Viewer
	XP_063143303	(Get FASTA)	NCBI Sequence Viewer
	XP_063143304	(Get FASTA)	NCBI Sequence Viewer
	XP_063143305	(Get FASTA)	NCBI Sequence Viewer
	XP_063143306	(Get FASTA)	NCBI Sequence Viewer
	XP_063143307	(Get FASTA)	NCBI Sequence Viewer
	XP_063143308	(Get FASTA)	NCBI Sequence Viewer
	XP_063143309	(Get FASTA)	NCBI Sequence Viewer
	XP_063143310	(Get FASTA)	NCBI Sequence Viewer
	XP_063143311	(Get FASTA)	NCBI Sequence Viewer
	XP_063143312	(Get FASTA)	NCBI Sequence Viewer
	XP_063143313	(Get FASTA)	NCBI Sequence Viewer
	XP_063143314	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAC53775	(Get FASTA)	NCBI Sequence Viewer
	EDL97750	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009034
	ENSRNOP00000076021
	ENSRNOP00000094592
GenBank Protein	Q8CH84	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001289146 ⟸ NM_001302217

- UniProtKB:

G3V6U4 (UniProtKB/TrEMBL), A6JRF7 (UniProtKB/TrEMBL), A0A1B0GWQ5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTE
DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT
LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG
ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYP
GPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESI
LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK
THKA

hide sequence

Ensembl Acc Id:

ENSRNOP00000075983 ⟸ ENSRNOT00000092743

Ensembl Acc Id:

ENSRNOP00000009034 ⟸ ENSRNOT00000009034

Ensembl Acc Id:

ENSRNOP00000076021 ⟸ ENSRNOT00000093032

Ensembl Acc Id:

ENSRNOP00000076072 ⟸ ENSRNOT00000093007

Ensembl Acc Id:

ENSRNOP00000094592 ⟸ ENSRNOT00000105492

RefSeq Acc Id:	XP_063143309 ⟸ XM_063287239
- Peptide Label:	isoform X6
- UniProtKB:	Q8CH84 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143308 ⟸ XM_063287238
- Peptide Label:	isoform X4
- UniProtKB:	Q8CH84 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143302 ⟸ XM_063287232
- Peptide Label:	isoform X1
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143305 ⟸ XM_063287235
- Peptide Label:	isoform X2
- UniProtKB:	A6JRF7 (UniProtKB/TrEMBL), G3V6U4 (UniProtKB/TrEMBL), A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143301 ⟸ XM_063287231
- Peptide Label:	isoform X1
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143311 ⟸ XM_063287241
- Peptide Label:	isoform X6
- UniProtKB:	Q8CH84 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143307 ⟸ XM_063287237
- Peptide Label:	isoform X3
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143298 ⟸ XM_063287228
- Peptide Label:	isoform X3
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143299 ⟸ XM_063287229
- Peptide Label:	isoform X4
- UniProtKB:	Q8CH84 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143300 ⟸ XM_063287230
- Peptide Label:	isoform X5
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143297 ⟸ XM_063287227
- Peptide Label:	isoform X2
- UniProtKB:	A6JRF7 (UniProtKB/TrEMBL), G3V6U4 (UniProtKB/TrEMBL), A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143296 ⟸ XM_063287226
- Peptide Label:	isoform X1
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143310 ⟸ XM_063287240
- Peptide Label:	isoform X6
- UniProtKB:	Q8CH84 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143314 ⟸ XM_063287244
- Peptide Label:	isoform X6
- UniProtKB:	Q8CH84 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143306 ⟸ XM_063287236
- Peptide Label:	isoform X3
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143303 ⟸ XM_063287233
- Peptide Label:	isoform X1
- UniProtKB:	A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143304 ⟸ XM_063287234
- Peptide Label:	isoform X2
- UniProtKB:	A6JRF7 (UniProtKB/TrEMBL), G3V6U4 (UniProtKB/TrEMBL), A0A1B0GWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143312 ⟸ XM_063287242
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063143313 ⟸ XM_063287243
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000105724 ⟸ ENSRNOT00000156565

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CH84-F1-model_v2	AlphaFold	Q8CH84	1-359	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693838

Promoter ID:

EPDNEW_R4360

Type:

multiple initiation site

Name:

Elavl2_1

Description:

ELAV like RNA binding protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	109,651,732 - 109,651,792	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628611	AgrOrtholog
BioCyc Gene	G2FUF-40747	BioCyc
Ensembl Genes	ENSRNOG00000006853	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000009034	ENTREZGENE
	ENSRNOT00000093032	ENTREZGENE
	ENSRNOT00000105492	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	ELAD_HU_SF	UniProtKB/Swiss-Prot
	HuB_RRM2	UniProtKB/Swiss-Prot
	HuB_RRM3	UniProtKB/Swiss-Prot
	Hud_Sxl_RNA	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
NCBI Gene	286973	ENTREZGENE
PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Elavl2	PhenoGen
PRINTS	HUDSXLRNA	UniProtKB/Swiss-Prot
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006853	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A1B0GWQ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A1B0GWU2_RAT	UniProtKB/TrEMBL
	A0A8I6B178_RAT	UniProtKB/TrEMBL
	A0ABK0LVM2_RAT	UniProtKB/TrEMBL
	A6JRF7	ENTREZGENE, UniProtKB/TrEMBL
	ELAV2_RAT	UniProtKB/Swiss-Prot
	G3V6U4	ENTREZGENE, UniProtKB/TrEMBL
	Q8CH84	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-09-09	Elavl2	ELAV like RNA binding protein 2	Elavl2	ELAV like neuron-specific RNA binding protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-11-11	Elavl2	ELAV like neuron-specific RNA binding protein 2	Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-02-23	Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	Elavl2_predicted	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) (predicted)	Data merged from RGD:1306251	737654	APPROVED
2005-01-20	Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	Hub	RNA binding protein HuB	Symbol and Name updated	1299863	APPROVED
2005-01-12	Elavl2_predicted	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL
2003-02-27	Hub	RNA binding protein HuB			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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