Rab31 (RAB31, member RAS oncogene family) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rab31 (RAB31, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab31
Name: RAB31, member RAS oncogene family
RGD ID: 628598
Description: Predicted to enable G protein activity; GDP binding activity; and GTP binding activity. Involved in Golgi vesicle transport. Located in early endosome; late endosome; and trans-Golgi network. Orthologous to human RAB31 (RAB31, member RAS oncogene family); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GTP-binding protein Rab0; monomeric GTP-binding protein; Rab0; ras-related protein Rab-31
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,693,596 - 112,828,104 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9112,693,597 - 112,828,092 (-)EnsemblGRCr8
mRatBN7.29105,246,712 - 105,382,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,246,709 - 105,381,253 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9113,655,680 - 113,787,479 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,767,100 - 118,894,913 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,121,634 - 117,253,437 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,370,072 - 113,504,606 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,370,033 - 113,504,605 (-)Ensemblrn6Rnor6.0
Rnor_5.09112,902,312 - 113,037,023 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49104,408,546 - 104,543,084 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera9102,633,277 - 102,759,642 (-)NCBICelera
RGSC_v3.19104,620,581 - 104,752,513 (-)NCBI
Cytogenetic Map9q37NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
afimoxifene  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A5  (ISO)
bucladesine  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
captan  (ISO)
carbamazepine  (ISO)
cefaloridine  (EXP)
chloroacetaldehyde  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenofibrate  (ISO)
folic acid  (ISO)
folpet  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
G protein activity  (IEA,ISO,ISS)
GDP binding  (IEA,ISO,ISS)
GTP binding  (IEA,ISO,ISS)
GTPase activity  (IBA,IEA,ISO,ISS)
hydrolase activity  (IEA)
metal ion binding  (IEA)
nucleotide binding  (IEA)
protein binding  (IPI,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Elucidating the molecular physiopathology of acute respiratory distress syndrome in severe acute respiratory syndrome patients. Kong SL, etal., Virus Res. 2009 Nov;145(2):260-9. Epub 2009 Jul 25.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Information Derived from GenBank Report RGD, Sept. 2003
10. Role of rRAB22b, an oligodendrocyte protein, in regulation of transport of vesicles from trans Golgi to endocytic compartments. Rodriguez-Gabin AG, etal., J Neurosci Res. 2001 Dec 15;66(6):1149-60.
11. Interaction of Rab31 and OCRL-1 in oligodendrocytes: its role in transport of mannose 6-phosphate receptors. Rodriguez-Gabin AG, etal., J Neurosci Res. 2010 Feb 15;88(3):589-604. doi: 10.1002/jnr.22236.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:17189207   PMID:17678623   PMID:19345684   PMID:19725050   PMID:21255211   PMID:21849477   PMID:25568335  


Genomics

Comparative Map Data
Rab31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,693,596 - 112,828,104 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9112,693,597 - 112,828,092 (-)EnsemblGRCr8
mRatBN7.29105,246,712 - 105,382,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,246,709 - 105,381,253 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9113,655,680 - 113,787,479 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,767,100 - 118,894,913 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,121,634 - 117,253,437 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,370,072 - 113,504,606 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,370,033 - 113,504,605 (-)Ensemblrn6Rnor6.0
Rnor_5.09112,902,312 - 113,037,023 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49104,408,546 - 104,543,084 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera9102,633,277 - 102,759,642 (-)NCBICelera
RGSC_v3.19104,620,581 - 104,752,513 (-)NCBI
Cytogenetic Map9q37NCBI
RAB31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,708,301 - 9,862,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,708,246 - 9,862,551 (+)Ensemblhg38GRCh38
GRCh37189,708,298 - 9,862,548 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,765,274 - 9,852,548 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34189,698,302 - 9,852,547NCBI
Celera189,592,158 - 9,746,168 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,670,154 - 9,824,845 (+)NCBIHuRef
CHM1_1189,707,467 - 9,861,823 (+)NCBICHM1_1
T2T-CHM13v2.0189,871,688 - 10,026,019 (+)NCBIT2T-CHM13v2.0
Rab31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391765,958,721 - 66,079,747 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1765,958,724 - 66,079,747 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381765,651,726 - 65,772,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,651,729 - 65,772,752 (-)Ensemblmm10GRCm38
MGSCv371766,001,066 - 66,122,092 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361765,551,272 - 65,672,224 (-)NCBIMGSCv36mm8
Celera1769,955,123 - 70,076,119 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.03NCBI
Rab31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,354,646 - 2,446,453 (-)Ensembl
ChiLan1.0NW_0049554022,354,399 - 2,446,537 (-)NCBIChiLan1.0ChiLan1.0
RAB31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,588,767 - 28,742,636 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,281,361 - 14,435,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,424,677 - 4,578,263 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,706,960 - 6,793,147 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,710,174 - 6,859,896 (-)EnsemblpanPan2panpan1.1
RAB31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,678,896 - 75,807,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,678,908 - 75,817,426 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha775,076,498 - 75,205,288 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0775,739,452 - 75,868,183 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,739,099 - 75,868,181 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1775,437,794 - 75,566,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,455,552 - 75,584,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,764,955 - 75,893,623 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rab31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,398,635 - 2,476,693 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366261,628,451 - 1,660,510 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366261,628,379 - 1,673,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,278,647 - 98,385,795 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1698,278,644 - 98,385,857 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2691,609,428 - 91,647,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,583,178 - 68,736,182 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,583,259 - 68,736,771 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605043,536,070 - 43,688,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,285,132 - 18,372,650 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477018,285,140 - 18,372,389 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab31
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14175,635,990 - 175,765,001 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rab31
846 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:356
Count of miRNA genes:211
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000067974
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat

Markers in Region
D9Rat75  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,369,721 - 105,369,933 (+)MAPPERmRatBN7.2
Rnor_6.09113,493,100 - 113,493,311NCBIRnor6.0
Rnor_5.09113,025,517 - 113,025,728UniSTSRnor5.0
RGSC_v3.49104,531,509 - 104,531,801RGDRGSC3.4
RGSC_v3.49104,531,578 - 104,531,789UniSTSRGSC3.4
Celera9102,748,142 - 102,748,353UniSTS
RGSC_v3.19104,740,989 - 104,741,281RGD
SHRSP x BN Map976.0998RGD
SHRSP x BN Map976.0998UniSTS
Cytogenetic Map9q37UniSTS
RH132748  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,298,850 - 105,299,037 (+)MAPPERmRatBN7.2
Rnor_6.09113,422,157 - 113,422,343NCBIRnor6.0
Rnor_5.09112,954,305 - 112,954,491UniSTSRnor5.0
RGSC_v3.49104,460,702 - 104,460,888UniSTSRGSC3.4
Celera9102,685,345 - 102,685,531UniSTS
Cytogenetic Map9q37UniSTS
RH132781  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,246,761 - 105,246,950 (+)MAPPERmRatBN7.2
Rnor_6.09113,370,122 - 113,370,310NCBIRnor6.0
Rnor_5.09112,902,362 - 112,902,550UniSTSRnor5.0
RGSC_v3.49104,408,596 - 104,408,784UniSTSRGSC3.4
Celera9102,633,327 - 102,633,515UniSTS
Cytogenetic Map9q37UniSTS
BE115592  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29105,246,928 - 105,247,104 (+)MAPPERmRatBN7.2
Rnor_6.09113,370,289 - 113,370,464NCBIRnor6.0
Rnor_5.09112,902,529 - 112,902,704UniSTSRnor5.0
RGSC_v3.49104,408,763 - 104,408,938UniSTSRGSC3.4
Celera9102,633,494 - 102,633,669UniSTS
Cytogenetic Map9q37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000067974   ⟹   ENSRNOP00000063486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,693,597 - 112,828,092 (-)Ensembl
mRatBN7.2 Ensembl9105,246,709 - 105,381,234 (-)Ensembl
Rnor_6.0 Ensembl9113,370,033 - 113,504,605 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099369   ⟹   ENSRNOP00000087750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9112,775,202 - 112,828,092 (-)Ensembl
mRatBN7.2 Ensembl9105,328,331 - 105,381,253 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109162   ⟹   ENSRNOP00000076689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9105,246,712 - 105,381,234 (-)Ensembl
RefSeq Acc Id: NM_145094   ⟹   NP_659562
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,693,596 - 112,828,092 (-)NCBI
mRatBN7.29105,246,712 - 105,381,226 (-)NCBI
Rnor_6.09113,370,072 - 113,504,606 (-)NCBI
Rnor_5.09112,902,312 - 113,037,023 (-)NCBI
RGSC_v3.49104,408,546 - 104,543,084 (-)RGD
Celera9102,633,277 - 102,759,642 (-)RGD
Sequence:
RefSeq Acc Id: XM_039083027   ⟹   XP_038938955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89112,745,626 - 112,828,104 (-)NCBI
mRatBN7.29105,300,141 - 105,382,973 (-)NCBI
RefSeq Acc Id: NP_659562   ⟸   NM_145094
- UniProtKB: Q9JK74 (UniProtKB/Swiss-Prot),   Q6GQP4 (UniProtKB/Swiss-Prot),   A0A0G2JSZ1 (UniProtKB/TrEMBL),   A0A8I5Y4V8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063486   ⟸   ENSRNOT00000067974
RefSeq Acc Id: XP_038938955   ⟸   XM_039083027
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000076689   ⟸   ENSRNOT00000109162
Ensembl Acc Id: ENSRNOP00000087750   ⟸   ENSRNOT00000099369

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6GQP4-F1-model_v2 AlphaFold Q6GQP4 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696904
Promoter ID:EPDNEW_R7428
Type:multiple initiation site
Name:Rab31_1
Description:RAB31, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09113,504,614 - 113,504,674EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628598 AgrOrtholog
BioCyc Gene G2FUF-26486 BioCyc
Ensembl Genes ENSRNOG00000042189 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055019082 UniProtKB/Swiss-Prot
  ENSRNOG00060005264 UniProtKB/Swiss-Prot
  ENSRNOG00065019337 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000067974 ENTREZGENE
  ENSRNOT00000109162.1 UniProtKB/Swiss-Prot
  ENSRNOT00055032557 UniProtKB/Swiss-Prot
  ENSRNOT00060008755 UniProtKB/Swiss-Prot
  ENSRNOT00065032534 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7105732 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot
KEGG Report rno:246324 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91462 IMAGE-MGC_LOAD
NCBI Gene 246324 ENTREZGENE
PANTHER PTHR47978 UniProtKB/Swiss-Prot
Pfam Ras UniProtKB/Swiss-Prot
PharmGKB RAB31 RGD
PhenoGen Rab31 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot
PROSITE RAB UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042189 RatGTEx
  ENSRNOG00055019082 RatGTEx
  ENSRNOG00060005264 RatGTEx
  ENSRNOG00065019337 RatGTEx
SMART RAB UniProtKB/Swiss-Prot
  RAN UniProtKB/Swiss-Prot
  RAS UniProtKB/Swiss-Prot
  RHO UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0G2JSZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y4V8 ENTREZGENE
  A0A8I6A9D4_RAT UniProtKB/TrEMBL
  A6JRC2_RAT UniProtKB/TrEMBL
  A6JRC3_RAT UniProtKB/TrEMBL
  Q6GQP4 ENTREZGENE
  Q9JK74 ENTREZGENE
  RAB31_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9JK74 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rab31  RAB31, member RAS oncogene family  Rab0  GTP-binding protein Rab0  Symbol and Name updated 1299863 APPROVED
2003-02-27 Rab0  GTP-binding protein Rab0      Symbol and Name status set to provisional 70820 PROVISIONAL