Cep170 (centrosomal protein 170) - Rat Genome Database

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Gene: Cep170 (centrosomal protein 170) Rattus norvegicus
Analyze
Symbol: Cep170
Name: centrosomal protein 170
RGD ID: 621868
Description: Predicted to be located in centrosome. Predicted to be part of centriolar subdistal appendage. Predicted to be active in centriole. Orthologous to human CEP170 (centrosomal protein 170); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 170kDa; centrosomal protein of 170 kDa; centrosomal protein of 170 kDa-like; Kab; KAB1; KARP-1 binding protein 1; LOC100909664; Rhk1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,201,808 - 91,285,990 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1391,201,808 - 91,285,990 (-)EnsemblGRCr8
mRatBN7.21388,669,672 - 88,754,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,670,358 - 88,732,226 (-)EnsemblmRatBN7.2
Rnor_6.01394,807,090 - 94,887,448 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,807,756 - 94,859,436 (-)Ensemblrn6Rnor6.0
Rnor_5.01399,260,145 - 99,340,503 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41392,502,346 - 92,611,568 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1388,250,204 - 88,334,331 (-)NCBICelera
RGSC_v3.11392,691,921 - 92,753,605 (-)NCBI
Cytogenetic Map13q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriolar subdistal appendage  (IEA,ISO)
centriole  (IBA,IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IEA,ISO)
microtubule  (IEA)
spindle  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12870657   PMID:21399614   PMID:23213374   PMID:23386061   PMID:24421332   PMID:27623382  


Genomics

Comparative Map Data
Cep170
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,201,808 - 91,285,990 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1391,201,808 - 91,285,990 (-)EnsemblGRCr8
mRatBN7.21388,669,672 - 88,754,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,670,358 - 88,732,226 (-)EnsemblmRatBN7.2
Rnor_6.01394,807,090 - 94,887,448 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,807,756 - 94,859,436 (-)Ensemblrn6Rnor6.0
Rnor_5.01399,260,145 - 99,340,503 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41392,502,346 - 92,611,568 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1388,250,204 - 88,334,331 (-)NCBICelera
RGSC_v3.11392,691,921 - 92,753,605 (-)NCBI
Cytogenetic Map13q24NCBI
CEP170
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381243,124,428 - 243,255,785 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1243,124,428 - 243,255,793 (-)Ensemblhg38GRCh38
GRCh371243,287,730 - 243,418,583 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,354,353 - 241,485,331 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1216,649,094 - 216,705,506 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1213,733,812 - 213,798,610 (-)NCBIHuRef
HuRef1213,646,948 - 213,649,260 (-)NCBIHuRef
CHM1_11244,560,465 - 244,691,402 (-)NCBICHM1_1
T2T-CHM13v2.01242,535,446 - 242,666,489 (-)NCBIT2T-CHM13v2.0
Cep170
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,556,638 - 176,641,545 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,561,219 - 176,641,633 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381176,729,072 - 176,813,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,733,653 - 176,814,067 (-)Ensemblmm10GRCm38
MGSCv371178,663,784 - 178,737,255 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361178,570,328 - 178,650,795 (-)NCBIMGSCv36mm8
Celera1183,801,883 - 183,875,296 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.6NCBI
Cep170
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554066,590,490 - 6,670,077 (-)Ensembl
ChiLan1.0NW_0049554066,588,504 - 6,695,246 (-)NCBIChiLan1.0ChiLan1.0
CEP170
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,890,964 - 6,021,395 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116,111,383 - 6,243,782 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01218,726,142 - 218,856,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,107,145 - 224,238,990 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,107,145 - 224,238,813 (-)EnsemblpanPan2panpan1.1
CEP170
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1734,264,994 - 34,395,355 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl734,266,147 - 34,364,497 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha733,740,207 - 33,871,706 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0734,091,663 - 34,223,047 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,091,156 - 34,222,655 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1733,928,751 - 34,059,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0733,945,323 - 34,076,803 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0734,209,953 - 34,341,539 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cep170
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934447,197,318 - 47,315,672 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365267,466,731 - 7,549,993 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365267,431,470 - 7,549,979 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP170
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,068,542 - 16,191,137 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11016,068,544 - 16,191,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21018,524,821 - 18,599,367 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP170
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12580,135,967 - 80,263,764 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2580,134,657 - 80,214,464 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605582,315,167 - 82,443,554 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep170
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477116,117,065 - 16,231,095 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477116,116,197 - 16,232,569 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cep170
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11055,212,267 - 55,294,000 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cep170
485 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1302791Stl29Serum triglyceride level QTL 293.30.0011blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)138933312992500981Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH132374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,219,222 - 52,219,382 (-)MAPPERmRatBN7.2
mRatBN7.21388,669,794 - 88,669,981 (+)MAPPERmRatBN7.2
Rnor_6.01394,807,213 - 94,807,399NCBIRnor6.0
Rnor_5.01399,260,268 - 99,260,454UniSTSRnor5.0
RGSC_v3.41392,502,470 - 92,502,656UniSTSRGSC3.4
Celera1388,250,327 - 88,250,513UniSTS
RH 3.4 Map13592.5UniSTS
Cytogenetic Map13q25UniSTS
BF396392  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,696,278 - 88,696,408 (+)MAPPERmRatBN7.2
mRatBN7.21388,696,278 - 88,696,408 (-)MAPPERmRatBN7.2
Rnor_6.01343,843,582 - 43,843,711NCBIRnor6.0
Rnor_6.01394,833,697 - 94,833,826NCBIRnor6.0
Rnor_5.01348,938,547 - 48,938,676UniSTSRnor5.0
Rnor_5.01399,286,752 - 99,286,881UniSTSRnor5.0
RGSC_v3.41392,528,954 - 92,529,083UniSTSRGSC3.4
Celera1388,276,811 - 88,276,940UniSTS
RH 3.4 Map13593.0UniSTS
Cytogenetic Map13q25UniSTS
BE108380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,670,189 - 88,670,340 (+)MAPPERmRatBN7.2
Rnor_6.01394,807,608 - 94,807,758NCBIRnor6.0
Rnor_5.01399,260,663 - 99,260,813UniSTSRnor5.0
RGSC_v3.41392,502,865 - 92,503,015UniSTSRGSC3.4
Celera1388,250,722 - 88,250,872UniSTS
RH 3.4 Map13593.4UniSTS
Cytogenetic Map13q25UniSTS
BE115808  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,723,606 - 88,723,789 (+)MAPPERmRatBN7.2
mRatBN7.21388,723,606 - 88,723,789 (-)MAPPERmRatBN7.2
Rnor_6.01343,816,191 - 43,816,373NCBIRnor6.0
Rnor_6.01394,861,027 - 94,861,209NCBIRnor6.0
Rnor_5.01348,911,156 - 48,911,338UniSTSRnor5.0
Rnor_5.01399,314,082 - 99,314,264UniSTSRnor5.0
RGSC_v3.41392,556,292 - 92,556,474UniSTSRGSC3.4
Celera1388,304,692 - 88,304,874UniSTS
RH 3.4 Map13593.4UniSTS
Cytogenetic Map13q25UniSTS
BQ205581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,707,132 - 88,707,309 (-)MAPPERmRatBN7.2
mRatBN7.21388,707,132 - 88,707,309 (+)MAPPERmRatBN7.2
Rnor_6.01394,844,551 - 94,844,727NCBIRnor6.0
Rnor_6.01343,832,681 - 43,832,857NCBIRnor6.0
Rnor_5.01348,927,646 - 48,927,822UniSTSRnor5.0
Rnor_5.01399,297,606 - 99,297,782UniSTSRnor5.0
RGSC_v3.41392,539,808 - 92,539,984UniSTSRGSC3.4
Celera1388,287,666 - 88,287,842UniSTS
RH 3.4 Map13591.9UniSTS
Cytogenetic Map13q25UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
19 1 30 125 68 60 36 84 36 12 270 148 11 100 67 70 24 23 23

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002724894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB038495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005467   ⟹   ENSRNOP00000005467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,201,808 - 91,260,351 (-)Ensembl
mRatBN7.2 Ensembl1388,694,889 - 88,732,226 (-)Ensembl
Rnor_6.0 Ensembl1394,832,307 - 94,859,390 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000005532   ⟹   ENSRNOP00000005532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,201,808 - 91,285,990 (-)Ensembl
mRatBN7.2 Ensembl1388,670,358 - 88,732,224 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079763   ⟹   ENSRNOP00000072465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,201,808 - 91,285,990 (-)Ensembl
mRatBN7.2 Ensembl1388,670,358 - 88,732,224 (-)Ensembl
Rnor_6.0 Ensembl1394,807,756 - 94,859,436 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103974   ⟹   ENSRNOP00000091063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1391,251,830 - 91,285,990 (-)Ensembl
mRatBN7.2 Ensembl1388,719,694 - 88,732,226 (-)Ensembl
RefSeq Acc Id: NM_001427216   ⟹   NP_001414145
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,990 (-)NCBI
RefSeq Acc Id: XM_063271993   ⟹   XP_063128063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271994   ⟹   XP_063128064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271995   ⟹   XP_063128065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271996   ⟹   XP_063128066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271997   ⟹   XP_063128067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271998   ⟹   XP_063128068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271999   ⟹   XP_063128069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272000   ⟹   XP_063128070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272001   ⟹   XP_063128071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272002   ⟹   XP_063128072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272003   ⟹   XP_063128073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272004   ⟹   XP_063128074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272005   ⟹   XP_063128075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272006   ⟹   XP_063128076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272007   ⟹   XP_063128077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272008   ⟹   XP_063128078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272009   ⟹   XP_063128079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,210,965 - 91,285,925 (-)NCBI
Ensembl Acc Id: ENSRNOP00000072465   ⟸   ENSRNOT00000079763
Ensembl Acc Id: ENSRNOP00000005467   ⟸   ENSRNOT00000005467
Ensembl Acc Id: ENSRNOP00000005532   ⟸   ENSRNOT00000005532
Ensembl Acc Id: ENSRNOP00000091063   ⟸   ENSRNOT00000103974
RefSeq Acc Id: NP_001414145   ⟸   NM_001427216
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128078   ⟸   XM_063272008
- Peptide Label: isoform X16
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128077   ⟸   XM_063272007
- Peptide Label: isoform X15
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128076   ⟸   XM_063272006
- Peptide Label: isoform X14
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128075   ⟸   XM_063272005
- Peptide Label: isoform X13
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128074   ⟸   XM_063272004
- Peptide Label: isoform X12
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128073   ⟸   XM_063272003
- Peptide Label: isoform X11
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128072   ⟸   XM_063272002
- Peptide Label: isoform X10
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128070   ⟸   XM_063272000
- Peptide Label: isoform X8
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128069   ⟸   XM_063271999
- Peptide Label: isoform X7
- UniProtKB: D3ZET9 (UniProtKB/TrEMBL),   F1LNI7 (UniProtKB/TrEMBL),   A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128071   ⟸   XM_063272001
- Peptide Label: isoform X9
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128068   ⟸   XM_063271998
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128067   ⟸   XM_063271997
- Peptide Label: isoform X5
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128066   ⟸   XM_063271996
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128065   ⟸   XM_063271995
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128064   ⟸   XM_063271994
- Peptide Label: isoform X2
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128063   ⟸   XM_063271993
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128079   ⟸   XM_063272009
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K315 (UniProtKB/TrEMBL),   A6JGC5 (UniProtKB/TrEMBL)
Protein Domains
CEP170 C-terminal   FHA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K315-F1-model_v2 AlphaFold A0A0G2K315 1-1139 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621868 AgrOrtholog
BioCyc Gene G2FUF-17212 BioCyc
Ensembl Genes ENSRNOG00000004127 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005467.9 UniProtKB/TrEMBL
  ENSRNOT00000005532 ENTREZGENE
  ENSRNOT00000005532.8 UniProtKB/TrEMBL
  ENSRNOT00000079763 ENTREZGENE
  ENSRNOT00000079763.3 UniProtKB/TrEMBL
  ENSRNOT00000103974.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro Cent_Immune-Sig_Mod UniProtKB/TrEMBL
  CEP170_C UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene 171457 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 170 KDA UniProtKB/TrEMBL
  PTHR15715:SF17 UniProtKB/TrEMBL
Pfam CEP170_C UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
PhenoGen Cep170 PhenoGen
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004127 RatGTEx
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A0G2K315 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABD2_RAT UniProtKB/TrEMBL
  A0A8J8XIN3_RAT UniProtKB/TrEMBL
  A6JGC3 ENTREZGENE, UniProtKB/TrEMBL
  A6JGC5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZET9 ENTREZGENE, UniProtKB/TrEMBL
  F1LNI7 ENTREZGENE
UniProt Secondary F1LNI7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Cep170  centrosomal protein 170  LOC100909664  centrosomal protein of 170 kDa-like  Data merged from RGD:6502250 737654 PROVISIONAL
2012-07-18 Cep170  centrosomal protein 170  Kab  KARP-1 binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100909664  centrosomal protein of 170 kDa-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Kab  KARP-1 binding protein 1  Rhk1    Symbol updated 1299863 APPROVED
2002-08-07 Rhk1  KARP-1 binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL