Mapre1 (microtubule-associated protein, RP/EB family, member 1) - Rat Genome Database

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Gene: Mapre1 (microtubule-associated protein, RP/EB family, member 1) Rattus norvegicus
Analyze
Symbol: Mapre1
Name: microtubule-associated protein, RP/EB family, member 1
RGD ID: 621781
Description: Enables microtubule plus-end binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; protein localization to microtubule cytoskeleton; and regulation of microtubule polymerization. Predicted to act upstream of or within non-motile cilium assembly and protein localization to centrosome. Predicted to be located in several cellular components, including cell projection membrane; focal adhesion; and microtubule cytoskeleton. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE1 (microtubule associated protein RP/EB family member 1); PARTICIPATES IN N-cadherin signaling pathway; INTERACTS WITH 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2-methoxyethanol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adenomatosis polyposis coli binding protein Eb1; APC-binding protein EB1; Eb1; end-binding protein 1; microtubule-associated protein RP/EB family member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,679,020 - 162,707,167 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3162,673,195 - 162,711,210 (+)EnsemblGRCr8
mRatBN7.23142,218,846 - 142,246,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,212,955 - 142,246,983 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3146,121,016 - 146,148,942 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,704,836 - 154,732,763 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,445,110 - 152,473,044 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,221,346 - 149,249,469 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,221,377 - 149,249,273 (+)Ensemblrn6Rnor6.0
Rnor_5.03155,599,578 - 155,627,687 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43144,120,532 - 144,148,856 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3140,960,310 - 140,988,053 (+)NCBICelera
RGSC_v3.13144,030,965 - 144,040,482 (+)NCBI
Cytogenetic Map3q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
buspirone  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
clofibric acid  (EXP)
clozapine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
haloperidol  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
methimazole  (EXP)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel dichloride  (EXP)
nitrates  (ISO)
Nivalenol  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
olesoxime  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP)
poly(I:C)  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sulfadimethoxine  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A systematic analysis of 40 random genes in cultured vascular smooth muscle subtypes reveals a heterogeneity of gene expression and identifies the tight junction gene zonula occludens 2 as a marker of epithelioid "pup" smooth muscle cells and a participant in carotid neointimal formation. Adams LD, etal., Arterioscler Thromb Vasc Biol 1999 Nov;19(11):2600-8.
2. Clasps are CLIP-115 and -170 associating proteins involved in the regional regulation of microtubule dynamics in motile fibroblasts. Akhmanova A, etal., Cell 2001 Mar 23;104(6):923-35.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. EB 1 immunofluorescence reveals an increase in growing astral microtubule length and number during anaphase in NRK-52E cells. Morrison EE and Askham JM, Eur J Cell Biol 2001 Dec;80(12):749-53.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10773885   PMID:11943150   PMID:12477932   PMID:15489334   PMID:15631994   PMID:16148041   PMID:16247022   PMID:16525027   PMID:16621792   PMID:17600711   PMID:18854161   PMID:19632184  
PMID:21399614   PMID:21551097   PMID:21820309   PMID:22681889   PMID:22898821   PMID:23509069   PMID:23904609   PMID:24706950   PMID:25416956   PMID:25456071   PMID:25468996   PMID:25490267  
PMID:26242911   PMID:26323690   PMID:27107012   PMID:28131823   PMID:29162697   PMID:31515488   PMID:31909540  


Genomics

Comparative Map Data
Mapre1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,679,020 - 162,707,167 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3162,673,195 - 162,711,210 (+)EnsemblGRCr8
mRatBN7.23142,218,846 - 142,246,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,212,955 - 142,246,983 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3146,121,016 - 146,148,942 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,704,836 - 154,732,763 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,445,110 - 152,473,044 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,221,346 - 149,249,469 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,221,377 - 149,249,273 (+)Ensemblrn6Rnor6.0
Rnor_5.03155,599,578 - 155,627,687 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43144,120,532 - 144,148,856 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3140,960,310 - 140,988,053 (+)NCBICelera
RGSC_v3.13144,030,965 - 144,040,482 (+)NCBI
Cytogenetic Map3q41NCBI
MAPRE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,819,777 - 32,850,405 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,819,769 - 32,856,284 (+)Ensemblhg38GRCh38
GRCh372031,407,760 - 31,438,211 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,871,435 - 30,901,867 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342030,871,434 - 30,901,865NCBI
Celera2028,161,619 - 28,192,142 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,194,932 - 28,225,450 (+)NCBIHuRef
CHM1_12031,311,126 - 31,341,645 (+)NCBICHM1_1
T2T-CHM13v2.02034,546,449 - 34,577,086 (+)NCBIT2T-CHM13v2.0
Mapre1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,583,131 - 153,615,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,583,194 - 153,615,230 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382153,741,287 - 153,773,317 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,741,274 - 153,773,310 (+)Ensemblmm10GRCm38
MGSCv372153,567,023 - 153,599,053 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362153,432,817 - 153,459,666 (+)NCBIMGSCv36mm8
Celera2159,584,963 - 159,618,551 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.95NCBI
Mapre1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542228,346,495 - 28,358,513 (-)NCBIChiLan1.0ChiLan1.0
MAPRE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,506,879 - 38,537,472 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,499,835 - 38,530,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02029,103,963 - 29,134,439 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,222,155 - 30,252,440 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2030,222,155 - 30,252,440 (+)EnsemblpanPan2panpan1.1
MAPRE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,130,125 - 22,163,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,130,125 - 22,238,109 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2421,776,007 - 21,809,774 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02422,817,207 - 22,851,001 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,817,183 - 22,850,998 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,093,309 - 22,125,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,201,769 - 22,235,563 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,632,807 - 22,666,569 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mapre1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,153,341 - 171,176,673 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648519,577,859 - 19,608,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAPRE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,387,062 - 36,426,417 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11736,390,698 - 36,426,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,327,542 - 41,359,142 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAPRE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,191,848 - 37,225,454 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl237,205,654 - 37,223,784 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605089,679,921 - 89,713,248 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mapre1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248426,416,877 - 6,444,043 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Mapre1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15133,062,147 - 133,090,603 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mapre1
131 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:129
Interacting mature miRNAs:184
Transcripts:ENSRNOT00000016220
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
Mapre1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2841,242,476 - 41,243,345 (+)MAPPERmRatBN7.2
Rnor_6.0845,050,043 - 45,050,911NCBIRnor6.0
Rnor_5.0843,536,857 - 43,537,725UniSTSRnor5.0
RGSC_v3.43144,147,572 - 144,147,719UniSTSRGSC3.4
Celera840,841,755 - 40,842,623UniSTS
Cytogenetic Map8q22UniSTS
Cytogenetic Map3q41UniSTS
RH128960  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23142,245,527 - 142,245,723 (+)MAPPERmRatBN7.2
Rnor_6.03149,248,007 - 149,248,202NCBIRnor6.0
Rnor_5.03155,626,225 - 155,626,420UniSTSRnor5.0
RGSC_v3.43144,147,571 - 144,147,766UniSTSRGSC3.4
Celera3140,986,768 - 140,986,963UniSTS
Cytogenetic Map3q41UniSTS
Mapre1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23142,245,528 - 142,245,676 (+)MAPPERmRatBN7.2
Rnor_6.03149,248,008 - 149,248,155NCBIRnor6.0
Rnor_5.03155,626,226 - 155,626,373UniSTSRnor5.0
RGSC_v3.43144,147,572 - 144,147,719UniSTSRGSC3.4
Celera3140,986,769 - 140,986,916UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001429678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH005596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016220   ⟹   ENSRNOP00000016220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3162,679,060 - 162,711,210 (+)Ensembl
mRatBN7.2 Ensembl3142,218,901 - 142,246,983 (+)Ensembl
Rnor_6.0 Ensembl3149,221,377 - 149,249,273 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087752   ⟹   ENSRNOP00000068567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3162,679,454 - 162,704,539 (+)Ensembl
mRatBN7.2 Ensembl3142,218,863 - 142,244,362 (+)Ensembl
Rnor_6.0 Ensembl3149,221,409 - 149,237,224 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110766   ⟹   ENSRNOP00000096433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3162,673,195 - 162,711,210 (+)Ensembl
mRatBN7.2 Ensembl3142,212,955 - 142,246,983 (+)Ensembl
RefSeq Acc Id: NM_138509   ⟹   NP_612518
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83162,679,070 - 162,706,990 (+)NCBI
mRatBN7.23142,218,889 - 142,246,813 (+)NCBI
Rnor_6.03149,221,377 - 149,249,292 (+)NCBI
Rnor_5.03155,599,578 - 155,627,687 (+)NCBI
RGSC_v3.43144,120,532 - 144,148,856 (+)RGD
Celera3140,960,310 - 140,988,053 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235294   ⟹   XP_006235356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83162,679,255 - 162,707,167 (+)NCBI
mRatBN7.23142,219,069 - 142,246,990 (+)NCBI
Rnor_6.03149,221,614 - 149,249,469 (+)NCBI
Rnor_5.03155,599,578 - 155,627,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006235295   ⟹   XP_006235357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83162,679,020 - 162,707,167 (+)NCBI
mRatBN7.23142,218,846 - 142,246,990 (+)NCBI
Rnor_6.03149,221,346 - 149,249,469 (+)NCBI
Rnor_5.03155,599,578 - 155,627,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104099   ⟹   XP_038960027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83162,679,325 - 162,707,167 (+)NCBI
mRatBN7.23142,219,169 - 142,246,990 (+)NCBI
RefSeq Acc Id: NP_612518   ⟸   NM_138509
- UniProtKB: Q66HR2 (UniProtKB/Swiss-Prot),   A6KHW5 (UniProtKB/TrEMBL),   A0A8L2Q865 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235357   ⟸   XM_006235295
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006235356   ⟸   XM_006235294
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000016220   ⟸   ENSRNOT00000016220
Ensembl Acc Id: ENSRNOP00000068567   ⟸   ENSRNOT00000087752
RefSeq Acc Id: XP_038960027   ⟸   XM_039104099
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000096433   ⟸   ENSRNOT00000110766
Protein Domains
Calponin-homology (CH)   EB1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HR2-F1-model_v2 AlphaFold Q66HR2 1-268 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692564
Promoter ID:EPDNEW_R3089
Type:initiation region
Name:Mapre1_1
Description:microtubule-associated protein, RP/EB family, member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03149,221,404 - 149,221,464EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621781 AgrOrtholog
BioCyc Gene G2FUF-47208 BioCyc
Ensembl Genes ENSRNOG00000011798 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016220 ENTREZGENE
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  1.20.5.1430 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7192469 IMAGE-MGC_LOAD
InterPro CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  EB1_C UniProtKB/Swiss-Prot
  EB1_C_sf UniProtKB/Swiss-Prot
  MAPRE UniProtKB/Swiss-Prot
KEGG Report rno:114764 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93188 IMAGE-MGC_LOAD
NCBI Gene 114764 ENTREZGENE
PANTHER PTHR10623 UniProtKB/Swiss-Prot
Pfam EB1 UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PhenoGen Mapre1 PhenoGen
PROSITE EB1_C UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011798 RatGTEx
Superfamily-SCOP SSF140612 UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
UniProt A0A0G2JT48_RAT UniProtKB/TrEMBL
  A0A8I6GM28_RAT UniProtKB/TrEMBL
  A0A8L2Q865 ENTREZGENE, UniProtKB/TrEMBL
  A6KHW5 ENTREZGENE, UniProtKB/TrEMBL
  MARE1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Mapre1  microtubule-associated protein, RP/EB family, member 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Mapre1  microtubule-associated protein, RP/EB family, member 1      Symbol and Name status set to provisional 70820 PROVISIONAL