Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | melanoma | | ISO | PIP4K2A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:22535842 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | melanoma | | ISO | PIP4K2A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:22535842 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Type I phosphatidylinositol-4-phosphate 5-kinases. Cloning of the third isoform and deletion/substitution analysis of members of this novel lipid kinase family. | Ishihara H, etal., J Biol Chem 1998 Apr 10;273(15):8741-8. |
4. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
6. | SMPDB Annotation Import Pipeline | Pipeline to import SMPDB annotations from SMPDB into RGD |
7. | GOA pipeline | RGD automated data pipeline |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:16434494 | PMID:22206666 | PMID:23758345 | PMID:25495341 | PMID:25578879 |
Pip4k2a (Rattus norvegicus - Norway rat) |
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PIP4K2A (Homo sapiens - human) |
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Pip4k2a (Mus musculus - house mouse) |
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Pip4k2a (Chinchilla lanigera - long-tailed chinchilla) |
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PIP4K2A (Pan paniscus - bonobo/pygmy chimpanzee) |
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PIP4K2A (Canis lupus familiaris - dog) |
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Pip4k2a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PIP4K2A (Sus scrofa - pig) |
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PIP4K2A (Chlorocebus sabaeus - green monkey) |
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Pip4k2a (Heterocephalus glaber - naked mole-rat) |
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Variants in Pip4k2a
1071 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH143686 |
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RH142512 |
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RH139055 |
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AI577465 |
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BE118396 |
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RefSeq Transcripts | NM_053926 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039095304 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095305 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095306 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB032899 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BQ782736 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB715008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473990 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CO573943 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CV077559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DV713604 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ233307 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ233672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000022375 ⟹ ENSRNOP00000022375 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_053926 ⟹ NP_446378 | ||||||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039095304 ⟹ XP_038951232 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039095305 ⟹ XP_038951233 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039095306 ⟹ XP_038951234 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_446378 | (Get FASTA) | NCBI Sequence Viewer |
XP_038951232 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951233 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951234 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | BAA85160 | (Get FASTA) | NCBI Sequence Viewer |
EDL78774 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000022375 | ||
ENSRNOP00000022375.8 | |||
ENSRNOP00055014889 | |||
ENSRNOP00060029092 | |||
ENSRNOP00065003122 | |||
GenBank Protein | Q9R0I8 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_446378 ⟸ NM_053926 |
- UniProtKB: | Q9R0I8 (UniProtKB/Swiss-Prot), A6JM97 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_038951232 ⟸ XM_039095304 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6JM97 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951234 ⟸ XM_039095306 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A6JM97 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951233 ⟸ XM_039095305 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | ENSRNOP00000022375 ⟸ ENSRNOT00000022375 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-F1LX22-F1-model_v2 | AlphaFold | F1LX22 | 1-194 | view protein structure |
AF-Q9R0I8-F1-model_v2 | AlphaFold | Q9R0I8 | 1-406 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:621708 | AgrOrtholog |
BioCyc Gene | G2FUF-8548 | BioCyc |
BioCyc Pathway | PWY-6351 [D-myo-inositol (1,4,5)-trisphosphate biosynthesis] | BioCyc |
PWY-6367 [D-myo-inositol-5-phosphate metabolism] | BioCyc | |
BioCyc Pathway Image | PWY-6351 | BioCyc |
PWY-6367 | BioCyc | |
Ensembl Genes | ENSRNOG00000016670 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00055010925 | UniProtKB/Swiss-Prot | |
ENSRNOG00060020405 | UniProtKB/Swiss-Prot | |
ENSRNOG00065003110 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000022375 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOT00000022375.8 | UniProtKB/Swiss-Prot | |
ENSRNOT00055018504 | UniProtKB/Swiss-Prot | |
ENSRNOT00060035398 | UniProtKB/Swiss-Prot | |
ENSRNOT00065004375 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 2-Layer Sandwich | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.30.800.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | PInositol-4-P-5-kinase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PInositol-4-P-5-kinase_core | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PInositol-4-P-5-kinase_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:116723 | UniProtKB/Swiss-Prot |
NCBI Gene | 116723 | ENTREZGENE |
PANTHER | PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 ALPHA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR23086 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | PIP5K | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Pip4k2a | PhenoGen |
PROSITE | PIPK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000016670 | RatGTEx |
ENSRNOG00055010925 | RatGTEx | |
ENSRNOG00060020405 | RatGTEx | |
ENSRNOG00065003110 | RatGTEx | |
SMART | PIPKc | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SAICAR synthase-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A6JM97 | ENTREZGENE, UniProtKB/TrEMBL |
F1LX22_RAT | UniProtKB/TrEMBL | |
PI42A_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-09 | Pip4k2a | phosphatidylinositol-5-phosphate 4-kinase type 2 alpha | LOC100909950 | uncharacterized LOC100909950 | Data merged from RGD:6501048 | 737654 | PROVISIONAL |
2016-04-20 | Pip4k2a | phosphatidylinositol-5-phosphate 4-kinase type 2 alpha | Pip4k2a | phosphatidylinositol-5-phosphate 4-kinase, type II, alpha | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2013-04-17 | Pip4k2a | phosphatidylinositol-5-phosphate 4-kinase, type II, alpha | LOC100363127 | phosphatidylinositol-5-phosphate 4-kinase type-2 alpha-like | Data merged from RGD:2324762 | 737654 | PROVISIONAL |
2012-07-05 | LOC100909950 | uncharacterized LOC100909950 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2010-05-12 | LOC100363127 | phosphatidylinositol-5-phosphate 4-kinase type-2 alpha-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-02-25 | Pip4k2a | phosphatidylinositol-5-phosphate 4-kinase, type II, alpha | Pip5k2a | phosphatidylinositol-4-phosphate 5-kinase, type II, alpha | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2004-02-26 | Pip5k2a | phosphatidylinositol-4-phosphate 5-kinase, type II, alpha | Symbol and Name status set to approved | 625702 | APPROVED | ||
2002-08-07 | Pip5k2a | phosphatidylinositol-4-phosphate 5-kinase, type II, alpha | Symbol and Name status set to provisional | 70820 | PROVISIONAL |