Egr2 (early growth response 2) - Rat Genome Database

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Gene: Egr2 (early growth response 2) Rattus norvegicus
Analyze
Symbol: Egr2
Name: early growth response 2
RGD ID: 621608
Description: Enables HMG box domain binding activity. Involved in learning or memory; regulation of neuronal synaptic plasticity; and response to insulin. Predicted to be located in cytoplasm and nucleoplasm. Biomarker of middle cerebral artery infarction. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1D; Charcot-Marie-Tooth disease type 3; Charcot-Marie-Tooth disease type 4E; and motor peripheral neuropathy. Orthologous to human EGR2 (early growth response 2); PARTICIPATES IN interleukin-4 signaling pathway; INTERACTS WITH (+)-pilocarpine; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 SUMO-protein ligase EGR2; E3 SUMO-protein transferase ERG2; early growth response protein 2; EGR-2; Krox20; zinc finger protein Krox-20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82021,050,149 - 21,055,201 (-)NCBIGRCr8
mRatBN7.22021,051,270 - 21,056,322 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2021,051,277 - 21,055,562 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2021,775,449 - 21,779,741 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02021,128,510 - 21,132,802 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02021,605,990 - 21,610,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02022,452,170 - 22,461,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2022,454,463 - 22,459,025 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02024,551,935 - 24,556,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42021,883,885 - 21,888,177 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12021,897,685 - 21,901,977 (-)NCBI
Celera2022,412,625 - 22,416,917 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
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Qualifier
Evidence
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Source
Original Reference(s)
Egr2Ratmiddle cerebral artery infarction  IEP 10395314 RGD 
Egr2Ratmotor peripheral neuropathy  ISOEGR2 (Homo sapiens)734922Dejerine-Sottas neuropathy more ...RGD 
Egr2Ratmotor peripheral neuropathy  ISOEGR2 (Homo sapiens)1601012congenital hypomyelinating neuropathy more ...RGD 
Egr2RatTendon Injuries treatmentIDA 10395300 RGD 
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Original Reference(s)
Egr2Ratautosomal dominant intellectual developmental disorder 70  ISOEGR2 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual developmental disorder and autosomal dominant 70ClinVarPMID:25741868
Egr2RatCharcot-Marie-Tooth disease  ISOEGR2 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth diseaseClinVarPMID:10369870 more ...
Egr2RatCharcot-Marie-Tooth disease type 1  ISOEGR2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10369870 more ...
Egr2RatCharcot-Marie-Tooth disease type 1D  ISOEGR2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10369870 more ...
Egr2RatCharcot-Marie-Tooth disease type 3  ISOEGR2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10369870 more ...
Egr2RatCharcot-Marie-Tooth disease type 4E  ISOEGR2 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 4EClinVarPMID:10369870 more ...
Egr2Ratearly myoclonic encephalopathy  ISOEGR2 (Homo sapiens)8554872ClinVar Annotator: match by term: Early myoclonic encephalopathyClinVarPMID:28492532
Egr2Ratgenetic disease  ISOEGR2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10762521 more ...
Egr2Ratparaplegia  ISOEGR2 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegiaClinVar 
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Original Reference(s)
Egr2Ratautistic disorder  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19000991
Egr2RatCharcot-Marie-Tooth disease type 1D  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Egr2RatCharcot-Marie-Tooth disease type 4E  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Egr2RatEwing sarcoma  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26214589
Egr2Rathepatocellular carcinoma  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28284560
Egr2Ratmotor peripheral neuropathy  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Egr2RatMyocardial Ischemia  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16214533
Egr2RatRett syndrome  ISOEGR2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19000991
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Original Reference(s)
Egr2RatCharcot-Marie-Tooth disease type 4E  ISSEgr2 (Mus musculus)13592920OMIM:605253MouseDO 

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Original Reference(s)
Egr2Rat(+)-pilocarpine multiple interactionsEXP 6480464Atropine inhibits the reaction [Pilocarpine results in increased expression of EGR2 mRNA] and Pirenzepine inhibits the reaction [Pilocarpine results in increased expression of EGR2 mRNA]CTDPMID:7968354
Egr2Rat(+)-pilocarpine increases expressionEXP 6480464Pilocarpine results in increased expression of EGR2 mRNACTDPMID:7968354
Egr2Rat(-)-demecolcine increases expressionISOEGR2 (Homo sapiens)6480464Demecolcine results in increased expression of EGR2 mRNACTDPMID:23649840
Egr2Rat(S)-nicotine increases expressionISOEgr2 (Mus musculus)6480464Nicotine results in increased expression of EGR2 mRNACTDPMID:17456735
Egr2Rat1,2-dimethylhydrazine multiple interactionsEXP 6480464[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in increased expression of EGR2 mRNACTDPMID:27840820
Egr2Rat1-chloro-2,4-dinitrobenzene decreases expressionISOEGR2 (Homo sapiens)6480464Dinitrochlorobenzene results in decreased expression of EGR2 mRNACTDPMID:17374397
Egr2Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOEgr2 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:28801915
Egr2Rat17beta-estradiol affects expressionISOEgr2 (Mus musculus)6480464Estradiol affects the expression of EGR2 mRNACTDPMID:15598610
Egr2Rat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of EGR2 mRNACTDPMID:32741896
Egr2Rat17beta-estradiol increases expressionISOEgr2 (Mus musculus)6480464Estradiol results in increased expression of EGR2 mRNACTDPMID:19484750
Egr2Rat17beta-estradiol multiple interactionsISOEGR2 (Homo sapiens)6480464[Estradiol binds to ESR2 protein] which results in increased expression of EGR2 mRNA more ...CTDPMID:20404318 more ...
Egr2Rat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of EGR2 mRNACTDPMID:32741896
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOEgr2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of EGR2 mRNACTDPMID:21570461 and PMID:24058054
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine affects methylationISOEGR2 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the methylation of EGR2 5' UTR more ...CTDPMID:28011154
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOEGR2 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of EGR2 mRNACTDPMID:22298810
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOEGR2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of EGR2 mRNACTDPMID:21296121
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOEgr2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of EGR2 mRNACTDPMID:19770486
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOEgr2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of EGR2 mRNACTDPMID:16962184
Egr2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOEGR2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of EGR2 mRNACTDPMID:20106945 and PMID:30096437
Egr2Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOEgr2 (Mus musculus)64804642 more ...CTDPMID:38648751

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Biological Process
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Egr2Rataorta development involved_inISOEgr2 (Mus musculus)1624291 PMID:25344368RGDPMID:25344368
Egr2Ratbrain segmentation acts_upstream_of_or_withinISOEgr2 (Mus musculus)1624291MGI:1857507 PMID:7903221RGDPMID:7903221
Egr2Ratfacial nerve structural organization involved_inISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratfacial nerve structural organization involved_inISOEgr2 (Mus musculus)1624291 PMID:10068633 and PMID:7935840RGDPMID:10068633 and PMID:7935840
Egr2Ratfacial nerve structural organization acts_upstream_of_or_withinISOEgr2 (Mus musculus)1624291MGI:96170 PMID:9806922RGDPMID:9806922
Egr2Ratfat cell differentiation involved_inISOEgr2 (Mus musculus)1624291 PMID:16054051 and PMID:18396140RGDPMID:16054051 and PMID:18396140
Egr2Ratgene expression involved_inISOEgr2 (Mus musculus)1624291 PMID:25344368RGDPMID:25344368
Egr2Ratgene expression acts_upstream_of_or_within_negative_effectISOEgr2 (Mus musculus)1624291 PMID:26941017RGDPMID:26941017
Egr2Ratlearning or memory  IEP 728620 RGD 
Egr2Ratmotor neuron axon guidance acts_upstream_of_or_withinISOEgr2 (Mus musculus)1624291MGI:96170 PMID:9806922RGDPMID:9806922
Egr2Ratmyelination acts_upstream_of_or_withinISOEgr2 (Mus musculus)1624291MGI:1931056 more ...RGDPMID:10704452 more ...
Egr2Ratpositive regulation of DNA-templated transcription involved_inISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratpositive regulation of DNA-templated transcription involved_inISOEgr2 (Mus musculus)1624291 PMID:11823429 and PMID:17938205RGDPMID:11823429 and PMID:17938205
Egr2Ratpositive regulation of myelination involved_inISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratpositive regulation of myelination involved_inISOEgr2 (Mus musculus)1624291 PMID:7935840RGDPMID:7935840
Egr2Ratpositive regulation of Schwann cell differentiation involved_inISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratpositive regulation of Schwann cell differentiation involved_inISOEgr2 (Mus musculus)1624291 PMID:10068633RGDPMID:10068633
Egr2Ratpositive regulation of transcription by RNA polymerase II involved_inISSUniProtKB:P111611600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratpositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOEgr2 (Mus musculus)1624291 PMID:8093858RGDPMID:8093858
Egr2Ratpositive regulation of transcription by RNA polymerase II involved_inISOEgr2 (Mus musculus)1624291 PMID:18396140 and PMID:8093858RGDPMID:18396140 and PMID:8093858
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Cellular Component
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Egr2Ratcytoplasm located_inISOEgr2 (Mus musculus)1624291 PMID:17938205RGDPMID:17938205
Egr2Ratcytoplasm located_inISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratintracellular membrane-bounded organelle located_inISOEGR2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Egr2Ratnucleoplasm located_inTAS 1600115Reactome:R-RNO-9616122ReactomeReactome:R-RNO-9616122
Egr2Ratnucleoplasm located_inIEAARBA:ARBA000262901600115GO_REF:0000117UniProtGO_REF:0000117
Egr2Ratnucleoplasm located_inISOEGR2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Egr2Ratnucleoplasm located_inTAS 1600115Reactome:R-RNO-9619658ReactomeReactome:R-RNO-9619658
Egr2Ratnucleoplasm located_inTAS 1600115Reactome:R-RNO-9615634ReactomeReactome:R-RNO-9615634
Egr2Ratnucleoplasm located_inTAS 1600115Reactome:R-RNO-9620368ReactomeReactome:R-RNO-9620368
Egr2Ratnucleoplasm located_inTAS 1600115Reactome:R-RNO-9614784ReactomeReactome:R-RNO-9614784
Egr2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Egr2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Egr2Ratnucleus located_inISOEgr2 (Mus musculus)1624291 PMID:15282162 and PMID:17938205RGDPMID:15282162 and PMID:17938205
Egr2Ratnucleus located_inISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
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Molecular Function
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Egr2Ratchromatin binding enablesISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2Ratchromatin binding enablesISOEgr2 (Mus musculus)1624291 PMID:17938205RGDPMID:17938205
Egr2RatDNA binding  TAS 728620 RGD 
Egr2RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
Egr2RatDNA binding enablesISOEgr2 (Mus musculus)1624291 PMID:8093858RGDPMID:8093858
Egr2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOEGR2 (Homo sapiens)1624291 PMID:12687019RGDPMID:12687019
Egr2RatDNA-binding transcription factor activity enablesISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2RatDNA-binding transcription factor activity enablesISOEgr2 (Mus musculus)1624291MGI:1931056 PMID:10068633 more ...RGDPMID:10068633 more ...
Egr2RatDNA-binding transcription factor activity enablesISOEGR2 (Homo sapiens)1624291 PMID:14532282RGDPMID:14532282
Egr2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesISSUniProtKB:P081521600115GO_REF:0000024UniProtGO_REF:0000024
Egr2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAFB:FBgn0000233 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Egr2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesISOEGR2 (Homo sapiens)1624291 PMID:17717711RGDPMID:17717711
Egr2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesISSUniProtKB:P111611600115GO_REF:0000024UniProtGO_REF:0000024
Egr2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesISOEgr2 (Mus musculus)1624291 PMID:31852952RGDPMID:31852952
Egr2RatHMG box domain binding enablesIPIUniProtKB:O551706892704PMID:16582099UniProt 
Egr2RatHMG box domain binding enablesIPIUniProtKB:Q048866892704PMID:16582099UniProt 
Egr2RatHMG box domain binding enablesIPIUniProtKB:Q050666892704PMID:16582099UniProt 
Egr2Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Egr2Ratprotein binding enablesISOEGR2 (Homo sapiens)1624291UniProtKB:P51610 more ...RGDPMID:14532282 and PMID:26871637
Egr2Ratprotein binding enablesISOEgr2 (Mus musculus)1624291UniProtKB:O70456 more ...RGDPMID:16675951 more ...
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Imported Annotations - PID (archival)

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Original Reference(s)
Egr2Ratinterleukin-4 signaling pathway  ISOEGR2 (Homo sapiens)6484113 PIDPID:200022

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#
Reference Title
Reference Citation
1. A novel mutation (D305V) in the early growth response 2 gene is associated with severe Charcot-Marie-Tooth type 1 disease. Bellone E, etal., Hum Mutat 1999 Oct;14(4):353-4.
2. EGR2 mutation R359W causes a spectrum of Dejerine-Sottas neuropathy. Boerkoel CF, etal., Neurogenetics 2001 Jul;3(3):153-7.
3. The ontogeny of Krox-20 expression in brainstem and cerebellar neurons. De S, etal., J Chem Neuroanat 2003 Mar;25(3):213-26.
4. Primary gene response to mechanical loading in healing rat Achilles tendons. Eliasson P, etal., J Appl Physiol (1985). 2013 Jun;114(11):1519-26. doi: 10.1152/japplphysiol.01500.2012. Epub 2013 Mar 21.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Transcription of krox-20/egr-2 is upregulated after exposure to fibrous particles and adhesion in rat alveolar macrophages. Hirano S, etal., Am J Respir Cell Mol Biol 2000 Sep;23(3):313-9.
8. mRNA differential display reveals Krox-20 as a neural plasticity-regulated gene in the rat hippocampus. Inokuchi K, etal., Biochem Biophys Res Commun 1996 Apr 16;221(2):430-6.
9. Reorganization of pontine rhythmogenic neuronal networks in Krox-20 knockout mice. Jacquin TD, etal., Neuron 1996 Oct;17(4):747-58.
10. Insulin-regulated expression of Egr-1 and Krox20: dependence on ERK1/2 and interaction with p38 and PI3-kinase pathways. Keeton AB, etal., Endocrinology. 2003 Dec;144(12):5402-10. Epub 2003 Sep 11.
11. Erythropoietin-induced changes in brain gene expression reveal induction of synaptic plasticity genes in experimental stroke. Mengozzi M, etal., Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9617-22. doi: 10.1073/pnas.1200554109. Epub 2012 May 29.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Screening of the early growth response 2 gene in Japanese patients with Charcot-Marie-Tooth disease type 1. Numakura C, etal., J Neurol Sci 2003 Jun 15;210(1-2):61-4.
15. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
16. Regulation of the myelin gene periaxin provides evidence for Krox-20-independent myelin-related signalling in Schwann cells. Parkinson DB, etal., Mol Cell Neurosci 2003 May;23(1):13-27.
17. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Frequency of mutations in the early growth response 2 gene associated with peripheral demyelinating neuropathies. Vandenberghe N, etal., J Med Genet 2002 Dec;39(12):e81.
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PMID:7903221   PMID:7935840   PMID:8093858   PMID:8565822   PMID:8895582   PMID:9806922   PMID:10068633   PMID:10704452   PMID:11509834   PMID:11823429   PMID:12687019   PMID:14532282  
PMID:15282162   PMID:15927552   PMID:16054051   PMID:16136673   PMID:16675951   PMID:16872830   PMID:17478888   PMID:17717711   PMID:17938205   PMID:18396140   PMID:18456662   PMID:19270309  
PMID:19651900   PMID:19765400   PMID:20427655   PMID:21357543   PMID:21836637   PMID:22147266   PMID:22511272   PMID:23073893   PMID:23307302   PMID:26941017   PMID:27890615   PMID:29580816  
PMID:31852952   PMID:36648143  



Egr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82021,050,149 - 21,055,201 (-)NCBIGRCr8
mRatBN7.22021,051,270 - 21,056,322 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2021,051,277 - 21,055,562 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2021,775,449 - 21,779,741 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02021,128,510 - 21,132,802 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02021,605,990 - 21,610,282 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02022,452,170 - 22,461,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2022,454,463 - 22,459,025 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02024,551,935 - 24,556,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42021,883,885 - 21,888,177 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12021,897,685 - 21,901,977 (-)NCBI
Celera2022,412,625 - 22,416,917 (-)NCBICelera
Cytogenetic Map20p11NCBI
EGR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381062,811,996 - 62,819,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1062,811,996 - 62,819,167 (-)EnsemblGRCh38hg38GRCh38
GRCh371064,571,756 - 64,578,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361064,241,763 - 64,246,133 (-)NCBINCBI36Build 36hg18NCBI36
Build 341064,241,762 - 64,246,133NCBI
Celera1057,839,025 - 57,846,195 (-)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1058,563,537 - 58,570,711 (-)NCBIHuRef
CHM1_11064,853,748 - 64,860,918 (-)NCBICHM1_1
T2T-CHM13v2.01063,670,139 - 63,677,309 (-)NCBIT2T-CHM13v2.0
Egr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391067,370,334 - 67,383,354 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1067,371,305 - 67,378,018 (+)EnsemblGRCm39 Ensembl
GRCm381067,534,469 - 67,542,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1067,535,475 - 67,542,188 (+)EnsemblGRCm38mm10GRCm38
MGSCv371067,000,617 - 67,004,936 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361066,933,235 - 66,937,545 (+)NCBIMGSCv36mm8
Celera1068,629,352 - 68,633,671 (+)NCBICelera
Cytogenetic Map10B5.1NCBI
cM Map1034.96NCBI
Egr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542516,055,748 - 16,060,048 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542516,055,748 - 16,068,429 (-)NCBIChiLan1.0ChiLan1.0
EGR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2874,998,060 - 75,105,787 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11075,003,383 - 75,111,110 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01059,320,073 - 59,326,869 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11061,648,364 - 61,652,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1061,648,364 - 61,652,846 (-)Ensemblpanpan1.1panPan2
EGR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1414,705,384 - 14,810,130 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl414,706,600 - 14,709,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha414,923,311 - 15,027,362 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0414,969,904 - 15,074,026 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl414,969,462 - 14,976,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1414,952,564 - 15,056,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0415,077,597 - 15,181,626 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0415,433,193 - 15,537,238 (-)NCBIUU_Cfam_GSD_1.0
Egr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721366,381,281 - 66,388,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367531,958,264 - 1,962,640 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367531,958,250 - 1,962,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EGR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1466,284,581 - 66,291,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11466,280,665 - 66,291,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21471,516,963 - 71,523,663 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q23-q25NCBI
EGR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1968,472,640 - 68,479,612 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl968,475,102 - 68,479,595 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604829,356,837 - 29,363,580 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Egr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624791955,161 - 959,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624791953,009 - 959,656 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Egr2
22 total Variants

Predicted Target Of
Summary Value
Count of predictions:701
Count of miRNA genes:303
Interacting mature miRNAs:391
Transcripts:ENSRNOT00000000792
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat

1 to 10 of 23 rows
X06746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22021,051,577 - 21,051,768 (+)MAPPERmRatBN7.2
Rnor_6.02022,454,769 - 22,454,959NCBIRnor6.0
Rnor_5.02024,552,243 - 24,552,433UniSTSRnor5.0
RGSC_v3.42021,884,193 - 21,884,383UniSTSRGSC3.4
Celera2022,412,933 - 22,413,123UniSTS
Cytogenetic Map20p11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 110 82 82 51 25 51 6 209 96 91 45 56 31



Ensembl Acc Id: ENSRNOT00000000792   ⟹   ENSRNOP00000000792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2021,051,277 - 21,055,562 (-)Ensembl
Rnor_6.0 Ensembl2022,454,463 - 22,459,025 (-)Ensembl
RefSeq Acc Id: NM_053633   ⟹   NP_446085
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,050,149 - 21,054,441 (-)NCBI
mRatBN7.22021,051,270 - 21,055,562 (-)NCBI
Rnor_6.02022,454,461 - 22,458,753 (-)NCBI
Rnor_5.02024,551,935 - 24,556,227 (-)NCBI
RGSC_v3.42021,883,885 - 21,888,177 (-)RGD
Celera2022,412,625 - 22,416,917 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601530   ⟹   XP_017457019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,050,149 - 21,055,201 (-)NCBI
mRatBN7.22021,051,270 - 21,056,322 (-)NCBI
Rnor_6.02022,452,170 - 22,459,564 (-)NCBI
Sequence:
RefSeq Acc Id: NP_446085   ⟸   NM_053633
- UniProtKB: Q54AG4 (UniProtKB/Swiss-Prot),   P51774 (UniProtKB/Swiss-Prot),   A6JKW1 (UniProtKB/TrEMBL),   A6JKW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457019   ⟸   XM_017601530
- Peptide Label: isoform X1
- UniProtKB: A6JKW2 (UniProtKB/TrEMBL),   Q9QYG4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000792   ⟸   ENSRNOT00000000792
C2H2-type

Name Modeler Protein Id AA Range Protein Structure
AF-P51774-F1-model_v2 AlphaFold P51774 1-470 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701562
Promoter ID:EPDNEW_R12085
Type:single initiation site
Name:Egr2_1
Description:early growth response 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02022,458,762 - 22,458,822EPDNEW


1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-3870 BioCyc
Ensembl Genes ENSRNOG00000000640 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000792 ENTREZGENE
  ENSRNOT00000000792.5 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro EGR_N UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:114090 UniProtKB/Swiss-Prot
NCBI Gene 114090 ENTREZGENE
PANTHER E3 SUMO-PROTEIN LIGASE EGR2 UniProtKB/Swiss-Prot
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot
Pfam DUF3446 UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Egr2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000640 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt A6JKW0 ENTREZGENE, UniProtKB/TrEMBL
  A6JKW1 ENTREZGENE, UniProtKB/TrEMBL
  A6JKW2 ENTREZGENE, UniProtKB/TrEMBL
  EGR2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q54AG4 ENTREZGENE
  Q9QYG4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q54AG4 UniProtKB/Swiss-Prot
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Egr2  early growth response 2      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Egr2  early growth response 2      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression mRNA expression in the hippocampus increases in response to neural activity 728620