Kif1b (kinesin family member 1B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Kif1b (kinesin family member 1B) Rattus norvegicus
Analyze
Symbol: Kif1b (Ensembl: Pgd)
Name: kinesin family member 1B (Ensembl:phosphogluconate dehydrogenase)
RGD ID: 621520
Description: Enables several functions, including ATP hydrolysis activity; microtubule motor activity; and scaffold protein binding activity. Involved in several processes, including cellular response to nerve growth factor stimulus; dense core granule cytoskeletal transport; and response to rotenone. Located in cytoplasmic vesicle; mitochondrion; and neuron projection. Biomarker of amyotrophic lateral sclerosis and synucleinopathy. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2A1; hepatocellular carcinoma; multiple sclerosis; neuroblastoma; and ovary epithelial cancer. Orthologous to human KIF1B (kinesin family member 1B); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: kinesin-family protein KIF1Bbeta3; kinesin-like protein KIF1B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,890,778 - 165,025,848 (-)NCBIGRCr8
mRatBN7.25159,607,697 - 159,742,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,561,271 - 159,742,778 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,328,348 - 162,459,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,148,854 - 164,279,199 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,105,220 - 164,235,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,994,803 - 166,133,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,938,576 - 166,133,491 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,643,325 - 169,780,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,250,225 - 166,381,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,260,412 - 166,391,970 (-)NCBI
Celera5157,882,642 - 158,013,175 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-vinylcyclohexene dioxide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
dimercaprol  (ISO)
dimethylarsinic acid  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glycine betaine  (EXP)
hydrogen peroxide  (ISO)
hypochlorous acid  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
L-ascorbic acid  (EXP)
lead diacetate  (ISO)
maneb  (ISO)
MeIQx  (ISO)
menadione  (ISO)
methimazole  (EXP)
methoxychlor  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (EXP)
nickel sulfate  (EXP)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
pyridaben  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
retinyl acetate  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
theophylline  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
venlafaxine hydrochloride  (EXP)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic variation in the KIF1B locus influences susceptibility to multiple sclerosis. Aulchenko YS, etal., Nat Genet. 2008 Dec;40(12):1402-3. doi: 10.1038/ng.251. Epub 2008 Nov 9.
2. Effects of interactions between environmental factors and KIF1B genetic variants on the risk of hepatocellular carcinoma in a Chinese cohort. Chen JH, etal., World J Gastroenterol. 2016 Apr 28;22(16):4183-90. doi: 10.3748/wjg.v22.i16.4183.
3. RNA helicase A is a downstream mediator of KIF1Bß tumor-suppressor function in neuroblastoma. Chen ZX, etal., Cancer Discov. 2014 Apr;4(4):434-51. doi: 10.1158/2159-8290.CD-13-0362. Epub 2014 Jan 27.
4. Dynamic changes in presynaptic and axonal transport proteins combined with striatal neuroinflammation precede dopaminergic neuronal loss in a rat model of AAV alpha-synucleinopathy. Chung CY, etal., J Neurosci. 2009 Mar 18;29(11):3365-73. doi: 10.1523/JNEUROSCI.5427-08.2009.
5. Identification of kinesin-like molecules in myogenic cells. Faire K, etal., Eur J Cell Biol 1998 Sep;77(1):27-34.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. MAP2 Defines a Pre-axonal Filtering Zone to Regulate KIF1- versus KIF5-Dependent Cargo Transport in Sensory Neurons. Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
9. Lack of support for association between the KIF1B rs10492972[C] variant and multiple sclerosis. International Multiple Sclerosis Genetics Consortium (IMSGC), etal., Nat Genet. 2010 Jun;42(6):469-70; author reply 470-1. doi: 10.1038/ng0610-469.
10. Regulation of mitochondrial transport in neurons. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
11. A novel kinesin-like protein, KIF1Bbeta3 is involved in the movement of lysosomes to the cell periphery in non-neuronal cells. Matsushita M, etal., Traffic. 2004 Mar;5(3):140-51.
12. Altered motor activity of alternative splice variants of the mammalian kinesin-3 protein KIF1B. Matsushita M, etal., Traffic. 2009 Nov;10(11):1647-54. doi: 10.1111/j.1600-0854.2009.00975.x. Epub 2009 Aug 10.
13. Deregulated expression of cytoskeleton related genes in the spinal cord and sciatic nerve of presymptomatic SOD1(G93A) Amyotrophic Lateral Sclerosis mouse model. Maximino JR, etal., Front Cell Neurosci. 2014 May 26;8:148. doi: 10.3389/fncel.2014.00148. eCollection 2014.
14. Rotenone-dependent changes of anterograde motor protein expression and mitochondrial mobility in brain areas related to neurodegenerative diseases. Melo TQ, etal., Cell Mol Neurobiol. 2013 Apr;33(3):327-35. doi: 10.1007/s10571-012-9898-z. Epub 2012 Dec 22.
15. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
16. Association of the kinesin superfamily motor protein KIF1Balpha with postsynaptic density-95 (PSD-95), synapse-associated protein-97, and synaptic scaffolding molecule PSD-95/discs large/zona occludens-1 proteins. Mok H, etal., J Neurosci. 2002 Jul 1;22(13):5253-8.
17. KIF1Bbeta2, capable of interacting with CHP, is localized to synaptic vesicles. Nakamura N, etal., J Biochem. 2002 Sep;132(3):483-91.
18. KIF1B, a novel microtubule plus end-directed monomeric motor protein for transport of mitochondria. Nangaku M, etal., Cell. 1994 Dec 30;79(7):1209-20.
19. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
21. Differential expression of molecular motors in the motor cortex of sporadic ALS. Pantelidou M, etal., Neurobiol Dis. 2007 Jun;26(3):577-89. Epub 2007 Feb 16.
22. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
24. Polymorphisms in the kinesin-like factor 1 B gene and risk of epithelial ovarian cancer in Eastern Chinese women. Shi TY, etal., Tumour Biol. 2015 Sep;36(9):6919-27. doi: 10.1007/s13277-015-3394-2. Epub 2015 Apr 9.
25. Mutant ubiquitin found in Alzheimer's disease causes neuritic beading of mitochondria in association with neuronal degeneration. Tan Z, etal., Cell Death Differ. 2007 Oct;14(10):1721-32. Epub 2007 Jun 15.
26. Downregulation of KIF1B mRNA in hepatocellular carcinoma tissues correlates with poor prognosis. Yang SZ, etal., World J Gastroenterol. 2015 Jul 21;21(27):8418-24. doi: 10.3748/wjg.v21.i27.8418.
27. Charcot-Marie-Tooth disease type 2A caused by mutation in a microtubule motor KIF1Bbeta. Zhao C, etal., Cell. 2001 Jun 1;105(5):587-97.
Additional References at PubMed
PMID:7477295   PMID:16396499   PMID:18614015  


Genomics

Comparative Map Data
Kif1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,890,778 - 165,025,848 (-)NCBIGRCr8
mRatBN7.25159,607,697 - 159,742,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,561,271 - 159,742,778 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,328,348 - 162,459,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,148,854 - 164,279,199 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,105,220 - 164,235,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,994,803 - 166,133,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,938,576 - 166,133,491 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,643,325 - 169,780,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,250,225 - 166,381,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,260,412 - 166,391,970 (-)NCBI
Celera5157,882,642 - 158,013,175 (-)NCBICelera
Cytogenetic Map5q36NCBI
KIF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,210,570 - 10,381,603 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,210,570 - 10,381,603 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,270,628 - 10,441,661 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,193,418 - 10,364,242 (+)NCBINCBI36Build 36hg18NCBI36
Build 34110,205,096 - 10,301,081NCBI
Celera19,382,204 - 9,553,049 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,426,051 - 9,595,334 (+)NCBIHuRef
CHM1_1110,259,738 - 10,430,539 (+)NCBICHM1_1
T2T-CHM13v2.019,754,179 - 9,925,204 (+)NCBIT2T-CHM13v2.0
Kif1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,260,776 - 149,392,762 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,260,776 - 149,392,150 (-)EnsemblGRCm39 Ensembl
GRCm384149,176,319 - 149,307,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,176,319 - 149,307,693 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,550,430 - 148,681,807 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,020,121 - 148,151,498 (-)NCBIMGSCv36mm8
Celera4151,442,205 - 151,574,627 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.05NCBI
Kif1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,370,596 - 3,489,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,366,791 - 3,503,845 (-)NCBIChiLan1.0ChiLan1.0
KIF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,806,664 - 218,018,148 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,452,587 - 216,663,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,969,910 - 9,141,964 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1110,198,997 - 10,367,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,385,087 - 10,408,078 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl110,198,997 - 10,364,577 (+)Ensemblpanpan1.1panPan2
KIF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,367,294 - 63,516,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,376,820 - 63,513,476 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,381,068 - 63,529,773 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,595,399 - 63,744,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,595,373 - 63,740,394 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,615,981 - 63,765,084 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,453,791 - 63,602,866 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,859,665 - 64,008,893 (+)NCBIUU_Cfam_GSD_1.0
Kif1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,605,878 - 33,737,269 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366234,091,190 - 4,218,251 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366234,091,093 - 4,222,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,495,144 - 70,661,798 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,495,143 - 70,663,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,444,239 - 64,596,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,393,478 - 121,567,704 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,395,836 - 121,546,803 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,309,532 - 25,484,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,282,999 - 2,428,563 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,282,999 - 2,428,586 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kif1b
505 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5156396728167181764Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat

Markers in Region
RH129337  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,665,942 - 159,666,122 (+)MAPPERmRatBN7.2
Rnor_6.05166,049,322 - 166,049,501NCBIRnor6.0
Rnor_5.05169,697,080 - 169,697,259UniSTSRnor5.0
RGSC_v3.45166,305,073 - 166,305,252UniSTSRGSC3.4
Celera5157,936,739 - 157,936,918UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
RH142507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,668,360 - 159,668,577 (+)MAPPERmRatBN7.2
Rnor_6.05166,051,740 - 166,051,956NCBIRnor6.0
Rnor_5.05169,699,498 - 169,699,714UniSTSRnor5.0
RGSC_v3.45166,307,491 - 166,307,707UniSTSRGSC3.4
Celera5157,939,157 - 157,939,373UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
BE107622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,645,448 - 159,645,607 (+)MAPPERmRatBN7.2
Rnor_6.05166,028,829 - 166,028,987NCBIRnor6.0
Rnor_5.05169,677,398 - 169,677,556UniSTSRnor5.0
RGSC_v3.45166,283,992 - 166,284,150UniSTSRGSC3.4
Celera5157,916,249 - 157,916,407UniSTS
RH 3.4 Map51110.6UniSTS
Cytogenetic Map5q36UniSTS
RH137798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,612,894 - 159,613,034 (+)MAPPERmRatBN7.2
Rnor_6.05165,996,274 - 165,996,413NCBIRnor6.0
Rnor_5.05169,644,850 - 169,644,989UniSTSRnor5.0
RGSC_v3.45166,251,438 - 166,251,577UniSTSRGSC3.4
Celera5157,883,855 - 157,883,994UniSTS
RH 3.4 Map51110.7UniSTS
Cytogenetic Map5q36UniSTS
AI008862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,672,232 - 159,672,412 (+)MAPPERmRatBN7.2
Rnor_6.05166,055,612 - 166,055,791NCBIRnor6.0
Rnor_5.05169,703,370 - 169,703,549UniSTSRnor5.0
RGSC_v3.45166,311,363 - 166,311,542UniSTSRGSC3.4
Celera5157,943,029 - 157,943,208UniSTS
RH 3.4 Map51106.3UniSTS
Cytogenetic Map5q36UniSTS
AU048655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25159,659,835 - 159,659,938 (+)MAPPERmRatBN7.2
Rnor_6.05166,043,215 - 166,043,317NCBIRnor6.0
Rnor_5.05169,691,694 - 169,691,796UniSTSRnor5.0
RGSC_v3.45166,298,379 - 166,298,481UniSTSRGSC3.4
Celera5157,930,635 - 157,930,737UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_057200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB070355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB120429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC135710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF083331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF155823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077784   ⟹   ENSRNOP00000074305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,561,271 - 159,613,778 (-)Ensembl
Rnor_6.0 Ensembl5165,938,576 - 165,999,203 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078830   ⟹   ENSRNOP00000075214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,991,037 - 166,133,274 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079919   ⟹   ENSRNOP00000075228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,995,287 - 166,116,516 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080888   ⟹   ENSRNOP00000072431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,995,287 - 166,116,516 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,668,015 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5166,051,413 - 166,133,402 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087739   ⟹   ENSRNOP00000074322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,994,788 - 166,133,491 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089099   ⟹   ENSRNOP00000075522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Rnor_6.0 Ensembl5165,995,061 - 166,133,491 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104782   ⟹   ENSRNOP00000082532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,582,731 - 159,598,949 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105558   ⟹   ENSRNOP00000094551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117986   ⟹   ENSRNOP00000088342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5159,611,682 - 159,742,778 (-)Ensembl
RefSeq Acc Id: NM_057200   ⟹   NP_476548
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,894,763 - 165,025,848 (-)NCBI
mRatBN7.25159,611,682 - 159,742,778 (-)NCBI
Rnor_6.05165,995,061 - 166,133,491 (-)NCBI
Rnor_5.05169,643,325 - 169,780,881 (-)NCBI
RGSC_v3.45166,250,225 - 166,381,782 (-)RGD
Celera5157,882,642 - 158,013,175 (-)RGD
Sequence:
RefSeq Acc Id: XM_039109167   ⟹   XP_038965095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109168   ⟹   XP_038965096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109169   ⟹   XP_038965097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109170   ⟹   XP_038965098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109171   ⟹   XP_038965099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109172   ⟹   XP_038965100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109173   ⟹   XP_038965101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109174   ⟹   XP_038965102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109175   ⟹   XP_038965103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109176   ⟹   XP_038965104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109177   ⟹   XP_038965105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,611,908 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109178   ⟹   XP_038965106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109179   ⟹   XP_038965107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109180   ⟹   XP_038965108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,607,697 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109181   ⟹   XP_038965109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
mRatBN7.25159,611,908 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109182   ⟹   XP_038965110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,948,901 - 165,025,703 (-)NCBI
mRatBN7.25159,665,820 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_039109183   ⟹   XP_038965111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,948,901 - 165,025,703 (-)NCBI
mRatBN7.25159,669,151 - 159,742,631 (-)NCBI
RefSeq Acc Id: XM_063287087   ⟹   XP_063143157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287088   ⟹   XP_063143158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287089   ⟹   XP_063143159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287090   ⟹   XP_063143160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287091   ⟹   XP_063143161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287092   ⟹   XP_063143162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287093   ⟹   XP_063143163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,890,778 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287094   ⟹   XP_063143164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,948,901 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287095   ⟹   XP_063143165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,948,901 - 165,025,703 (-)NCBI
RefSeq Acc Id: XM_063287096   ⟹   XP_063143166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85164,948,901 - 165,025,703 (-)NCBI
Protein Sequences
Protein RefSeqs NP_476548 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965095 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965097 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965098 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965100 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965104 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965106 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965107 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965109 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965110 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965111 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143157 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143158 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143160 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143161 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143162 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143164 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143165 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143166 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC33292 (Get FASTA)   NCBI Sequence Viewer  
  AAD39240 (Get FASTA)   NCBI Sequence Viewer  
  BAB86917 (Get FASTA)   NCBI Sequence Viewer  
  BAD51401 (Get FASTA)   NCBI Sequence Viewer  
  EDL81157 (Get FASTA)   NCBI Sequence Viewer  
  EDL81158 (Get FASTA)   NCBI Sequence Viewer  
  EDL81159 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072431.2
  ENSRNOP00000074305.2
  ENSRNOP00000074322.1
  ENSRNOP00000075214.2
  ENSRNOP00000075228.2
  ENSRNOP00000075522.2
  ENSRNOP00000077156.1
  ENSRNOP00000088342.1
  ENSRNOP00000094551.1
  ENSRNOP00055019651
  ENSRNOP00060040467
  ENSRNOP00065013721
GenBank Protein O88658 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_476548   ⟸   NM_057200
- UniProtKB: A0A8I5ZK86 (UniProtKB/Swiss-Prot),   Q65Z71 (UniProtKB/Swiss-Prot),   Q8R524 (UniProtKB/Swiss-Prot),   O88658 (UniProtKB/Swiss-Prot),   A0A8L2RAI0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075522   ⟸   ENSRNOT00000089099
Ensembl Acc Id: ENSRNOP00000072431   ⟸   ENSRNOT00000080888
Ensembl Acc Id: ENSRNOP00000074322   ⟸   ENSRNOT00000087739
Ensembl Acc Id: ENSRNOP00000075228   ⟸   ENSRNOT00000079919
Ensembl Acc Id: ENSRNOP00000074305   ⟸   ENSRNOT00000077784
Ensembl Acc Id: ENSRNOP00000075214   ⟸   ENSRNOT00000078830
RefSeq Acc Id: XP_038965103   ⟸   XM_039109175
- Peptide Label: isoform X11
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965098   ⟸   XM_039109170
- Peptide Label: isoform X4
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965096   ⟸   XM_039109168
- Peptide Label: isoform X2
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965108   ⟸   XM_039109180
- Peptide Label: isoform X20
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965104   ⟸   XM_039109176
- Peptide Label: isoform X12
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965102   ⟸   XM_039109174
- Peptide Label: isoform X9
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965107   ⟸   XM_039109179
- Peptide Label: isoform X17
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965099   ⟸   XM_039109171
- Peptide Label: isoform X5
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965097   ⟸   XM_039109169
- Peptide Label: isoform X3
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965101   ⟸   XM_039109173
- Peptide Label: isoform X8
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965100   ⟸   XM_039109172
- Peptide Label: isoform X6
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965106   ⟸   XM_039109178
- Peptide Label: isoform X14
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965095   ⟸   XM_039109167
- Peptide Label: isoform X1
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965109   ⟸   XM_039109181
- Peptide Label: isoform X22
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965105   ⟸   XM_039109177
- Peptide Label: isoform X13
- UniProtKB: A0A8L2R5V9 (UniProtKB/TrEMBL),   A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965110   ⟸   XM_039109182
- Peptide Label: isoform X23
- UniProtKB: A6IUA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965111   ⟸   XM_039109183
- Peptide Label: isoform X27
- UniProtKB: A6IUA8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094551   ⟸   ENSRNOT00000105558
Ensembl Acc Id: ENSRNOP00000088342   ⟸   ENSRNOT00000117986
Ensembl Acc Id: ENSRNOP00000082532   ⟸   ENSRNOT00000104782
RefSeq Acc Id: XP_063143162   ⟸   XM_063287092
- Peptide Label: isoform X19
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143163   ⟸   XM_063287093
- Peptide Label: isoform X21
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143158   ⟸   XM_063287088
- Peptide Label: isoform X10
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143157   ⟸   XM_063287087
- Peptide Label: isoform X7
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143161   ⟸   XM_063287091
- Peptide Label: isoform X18
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143159   ⟸   XM_063287089
- Peptide Label: isoform X15
- UniProtKB: A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143160   ⟸   XM_063287090
- Peptide Label: isoform X16
- UniProtKB: A0A8L2RAX8 (UniProtKB/TrEMBL),   A0A8L2RAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143165   ⟸   XM_063287095
- Peptide Label: isoform X25
- UniProtKB: A6IUA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143166   ⟸   XM_063287096
- Peptide Label: isoform X26
- UniProtKB: A6IUA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143164   ⟸   XM_063287094
- Peptide Label: isoform X24
- UniProtKB: A6IUA8 (UniProtKB/TrEMBL)
Protein Domains
FHA   Kinesin motor   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88658-F1-model_v2 AlphaFold O88658 1-1816 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694290
Promoter ID:EPDNEW_R4794
Type:initiation region
Name:Kif1b_1
Description:kinesin family member 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05166,133,470 - 166,133,530EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621520 AgrOrtholog
BioCyc Gene G2FUF-39140 BioCyc
Ensembl Genes ENSRNOG00000057626 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055013961 UniProtKB/Swiss-Prot
  ENSRNOG00060027832 UniProtKB/Swiss-Prot
  ENSRNOG00065011092 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077784.2 UniProtKB/TrEMBL
  ENSRNOT00000078830.2 UniProtKB/TrEMBL
  ENSRNOT00000079919.2 UniProtKB/TrEMBL
  ENSRNOT00000080888.2 UniProtKB/TrEMBL
  ENSRNOT00000086226.2 UniProtKB/Swiss-Prot
  ENSRNOT00000087739.2 UniProtKB/Swiss-Prot
  ENSRNOT00000089099.2 UniProtKB/TrEMBL
  ENSRNOT00000105558.1 UniProtKB/TrEMBL
  ENSRNOT00000117986.1 UniProtKB/TrEMBL
  ENSRNOT00055024087 UniProtKB/Swiss-Prot
  ENSRNOT00060048552 UniProtKB/Swiss-Prot
  ENSRNOT00065017997 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.200.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6-Phosphogluconate Dehydrogenase, domain 3 UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro 6-PGluconate_DH_C-like UniProtKB/TrEMBL
  6PGDH_C UniProtKB/TrEMBL
  6PGDH_decarbox UniProtKB/TrEMBL
  6PGDH_NADP-bd UniProtKB/TrEMBL
  6PGdom_BS UniProtKB/TrEMBL
  CENP-S UniProtKB/TrEMBL
  DH_multihelical UniProtKB/TrEMBL
  FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  Kinesin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin-like_KIF1-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pgluconate_DH UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_KIFIA_KIFIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117548 UniProtKB/Swiss-Prot
NCBI Gene 117548 ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1B ISOFORM X1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN-LIKE PROTEIN KIF1C ISOFORM X1 UniProtKB/TrEMBL
  PTHR11811 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 6PGD UniProtKB/TrEMBL
  CENP-S UniProtKB/TrEMBL
  DUF3694 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KIF1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD_binding_2 UniProtKB/TrEMBL
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kif1b PhenoGen
PRINTS 6PGDHDRGNASE UniProtKB/TrEMBL
  KINESINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE 6PGD UniProtKB/TrEMBL
  FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057626 RatGTEx
  ENSRNOG00055013961 RatGTEx
  ENSRNOG00060027832 RatGTEx
  ENSRNOG00065011092 RatGTEx
SMART 6PGD UniProtKB/TrEMBL
  FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KISc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP 6DGDH_C_like UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K7Q8_RAT UniProtKB/TrEMBL
  A0A0G2KA12_RAT UniProtKB/TrEMBL
  A0A8I5ZK86 ENTREZGENE
  A0A8I6A9T5_RAT UniProtKB/TrEMBL
  A0A8I6AL17_RAT UniProtKB/TrEMBL
  A0A8L2R5V9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RAI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RAX8 ENTREZGENE, UniProtKB/TrEMBL
  A6IUA6_RAT UniProtKB/TrEMBL
  A6IUA7_RAT UniProtKB/TrEMBL
  A6IUA8 ENTREZGENE, UniProtKB/TrEMBL
  KIF1B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q65Z71 ENTREZGENE
  Q8R524 ENTREZGENE
UniProt Secondary A0A8I5ZK86 UniProtKB/Swiss-Prot
  Q65Z71 UniProtKB/Swiss-Prot
  Q8R524 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Kif1b  kinesin family member 1B      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Kif1b  kinesin family member 1B      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in all myogenic cells at all stages 729092