Advanced Search (OLGA)

Gene: Pls3 (plastin 3) Rattus norvegicus

Analyze

Symbol:

Pls3

Name:

plastin 3

RGD ID:

621409

Description:

Predicted to enable actin filament binding activity. Predicted to be a structural constituent of presynaptic actin cytoskeleton. Involved in inner ear auditory receptor cell differentiation. Located in stereocilium. Human ortholog(s) of this gene implicated in congenital diaphragmatic hernia. Orthologous to human PLS3 (plastin 3); PARTICIPATES IN auditory mechanotransduction pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

plastin 3 (T-isoform); plastin-3; T-plastin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLS3 (plastin 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Pls3 (plastin 3 (T-isoform))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LCP1 (lymphocyte cytosolic protein 1)	HGNC	OrthoDB
Homo sapiens (human):	C21orf58 (chromosome 21 open reading frame 58)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PLS3 (plastin 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pls3 (plastin 3 (T-isoform))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pls3 (plastin 3 (T isoform))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pls3 (plastin 3 (T isoform))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Fim	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SAC6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SAC6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	plst-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	plst-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pls3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	pls3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	116,401,247 - 116,495,898 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	116,401,293 - 116,495,893 (+)	Ensembl				GRCr8
mRatBN7.2	X	111,589,193 - 111,683,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	111,589,254 - 111,683,891 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	113,692,615 - 113,779,538 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	117,183,401 - 117,270,327 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	114,734,740 - 114,821,667 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	119,030,311 - 119,124,268 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	119,030,419 - 119,124,250 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	119,173,230 - 119,266,240 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	29,868,937 - 29,965,118 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	110,881,127 - 110,971,056 (+)	NCBI		Celera
RGSC_v3.1	X	29,923,513 - 29,982,843 (-)	NCBI
Cytogenetic Map	X	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anterior Diaphragmatic Hernia (ISO)

BCARD syndrome (ISO)

Chemical and Drug Induced Liver Injury (ISO)

congenital diaphragmatic hernia (ISO,ISS)

Desbuquois dysplasia (ISO)

genetic disease (ISO)

osteoarthritis (ISO)

osteogenesis imperfecta (ISO)

osteoporosis (ISO,ISS)

Postmenopausal Osteoporosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

beauvericin (ISO)

benzbromarone (EXP)

benzene (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

bucladesine (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (EXP,ISO)

clozapine (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

D-glucose (ISO)

DDT (EXP)

deoxynivalenol (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

diuron (EXP)

dorsomorphin (ISO)

enniatin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

folic acid (ISO)

fonofos (ISO)

fulvestrant (ISO)

furfural (ISO)

gallic acid (ISO)

gentamycin (EXP)

glafenine (EXP)

glucose (ISO)

haloperidol (ISO)

hyaluronic acid (EXP)

hydrogen peroxide (EXP,ISO)

ivermectin (ISO)

L-ascorbic acid (ISO)

L-ethionine (EXP)

lead(0) (ISO)

lipopolysaccharide (ISO)

lithium atom (EXP)

lithium hydride (EXP)

malathion (ISO)

manganese(II) chloride (EXP)

medroxyprogesterone acetate (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

methylmercury(1+) (EXP)

N-nitrosomorpholine (EXP)

nefazodone (EXP)

nickel sulfate (ISO)

omeprazole (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

terbufos (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (EXP)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (IBA,IEA)

actin filament network formation (IBA)

bone development (ISO)

inner ear auditory receptor cell differentiation (IEP)

presynaptic actin cytoskeleton organization (IEA)

regulation of synaptic vesicle cycle (ISO)

Cellular Component

actin filament (IBA)

actin filament bundle (IBA)

cytoplasm (IBA,IEA,ISO)

cytosol (ISO)

neuromuscular junction (ISO)

stereocilium (IDA)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,IEA)

calcium ion binding (IEA)

metal ion binding (IEA)

structural constituent of presynaptic actin cytoskeleton (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transient expression of the t-isoform of plastins/fimbrin in the stereocilia of developing auditory hair cells.	Daudet N and Lebart MC, Cell Motil Cytoskeleton 2002 Dec;53(4):326-36.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Review series: The cell biology of hearing.	Schwander M, etal., J Cell Biol. 2010 Jul 12;190(1):9-20. doi: 10.1083/jcb.201001138.

Additional References at PubMed

PMID:7655078	PMID:12477932	PMID:23263861	PMID:24088043

Genomics

Comparative Map Data

Pls3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	116,401,247 - 116,495,898 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	116,401,293 - 116,495,893 (+)	Ensembl				GRCr8
mRatBN7.2	X	111,589,193 - 111,683,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	111,589,254 - 111,683,891 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	113,692,615 - 113,779,538 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	117,183,401 - 117,270,327 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	114,734,740 - 114,821,667 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	119,030,311 - 119,124,268 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	119,030,419 - 119,124,250 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	119,173,230 - 119,266,240 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	29,868,937 - 29,965,118 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	110,881,127 - 110,971,056 (+)	NCBI		Celera
RGSC_v3.1	X	29,923,513 - 29,982,843 (-)	NCBI
Cytogenetic Map	X	q34	NCBI

PLS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	115,561,174 - 115,650,861 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	115,560,928 - 115,650,861 (+)	Ensembl			hg38	GRCh38
GRCh37	X	114,795,501 - 114,885,181 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	114,701,765 - 114,791,246 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	114,618,488 - 114,707,970	NCBI
Celera	X	115,230,242 - 115,320,243 (+)	NCBI		Celera
Cytogenetic Map	X	q23	NCBI
HuRef	X	104,379,340 - 104,468,198 (+)	NCBI		HuRef
CHM1_1	X	114,706,001 - 114,796,082 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	113,969,539 - 114,059,207 (+)	NCBI		T2T-CHM13v2.0

Pls3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	74,829,259 - 74,918,788 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	74,829,260 - 74,918,788 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	75,785,653 - 75,875,182 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	75,785,654 - 75,875,182 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	73,030,993 - 73,120,509 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	72,038,383 - 72,127,258 (-)	NCBI		MGSCv36	mm8
Celera	X	67,188,917 - 67,297,722 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	38.3	NCBI

Pls3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	122,328 - 221,388 (-)	Ensembl
ChiLan1.0	NW_004955490	125,913 - 221,152 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	115,004,895 - 115,098,747 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	115,012,733 - 115,102,356 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	104,656,110 - 104,745,702 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	115,160,032 - 115,250,144 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	115,160,032 - 115,250,144 (+)	Ensembl			panPan2	panpan1.1

PLS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	88,308,817 - 88,399,682 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	88,308,888 - 88,398,810 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	74,429,089 - 74,519,776 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	90,023,698 - 90,114,659 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	90,022,719 - 90,117,154 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	87,466,392 - 87,557,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	89,141,351 - 89,232,259 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	88,976,701 - 89,067,622 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pls3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	87,322,781 - 87,411,736 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	246,042 - 335,440 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	246,042 - 335,440 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	94,885,118 - 94,971,659 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	94,885,098 - 94,971,664 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	109,452,808 - 109,539,961 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	28,495,210 - 28,582,236 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pls3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624940	120,073 - 216,622 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624940	120,073 - 216,522 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pls3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	101,314,037 - 101,402,273 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pls3
327 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	549
Count of miRNA genes:	277
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000060168
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Markers in Region

RH139054

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	111,628,349 - 111,628,511 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	119,069,784 - 119,069,945	NCBI	Rnor6.0
Rnor_5.0	X	119,211,762 - 119,211,923	UniSTS	Rnor5.0
RGSC_v3.4	X	29,924,408 - 29,924,569	UniSTS	RGSC3.4
Celera	X	110,920,170 - 110,920,331	UniSTS
Cytogenetic Map	X	q14	UniSTS

RH133212

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	X	116,432,511 - 116,432,720 (+)	Marker Load Pipeline
mRatBN7.2	X	111,620,504 - 111,620,713 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	119,061,936 - 119,062,144	NCBI	Rnor6.0
Rnor_5.0	X	119,203,914 - 119,204,122	UniSTS	Rnor5.0
RGSC_v3.4	X	29,932,209 - 29,932,417	UniSTS	RGSC3.4
Celera	X	110,912,330 - 110,912,538	UniSTS
Cytogenetic Map	X	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	63	59	6	327	163	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB557206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB798973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X70706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000060168 ⟹ ENSRNOP00000056912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	116,401,293 - 116,495,893 (+)	Ensembl
mRatBN7.2 Ensembl	X	111,589,254 - 111,683,891 (+)	Ensembl
Rnor_6.0 Ensembl	X	119,030,419 - 119,124,250 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139298 ⟹ ENSRNOP00000100088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	116,401,903 - 116,495,893 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158329 ⟹ ENSRNOP00000107822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	116,401,318 - 116,495,893 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162443 ⟹ ENSRNOP00000109117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	116,401,299 - 116,495,893 (+)	Ensembl

RefSeq Acc Id:

NM_031084 ⟹ NP_112346

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,401,309 - 116,495,898 (+)	NCBI
mRatBN7.2	X	111,589,301 - 111,683,897 (+)	NCBI
Rnor_6.0	X	119,030,419 - 119,124,257 (+)	NCBI
Rnor_5.0	X	119,173,230 - 119,266,240 (+)	NCBI
RGSC_v3.4	X	29,868,937 - 29,965,118 (-)	RGD
Celera	X	110,881,127 - 110,971,056 (+)	RGD

Sequence:

show sequence

GATTCCTAGGGGCAGAAGTTGTCTGAGAGCTTGGTCGGAAGCAGTAGGGCCAGATCAGCGACTC
TGCGACTTTTACATCTTCACATGGACGAGATGGCAACCACTCAGATTTCCAAAGATGAGCTTGA
TGAACTCAAAGAGGCCTTTGCAAAAGTTGATCTCAACAGCAATGGATTCATTTGCGACTATGAA
CTTCATGAGCTTTTCAAGGAAGCGAATATGCCATTGCCCGGATATAAAGTGAGAGAAATTATTC
AAAAACTCATGCTGGATGGCGACAGAAATAAAGATGGGAAGATAAGCTTTAATGAATTTGTTTA
TATTTTCCAAGAGGTAAAGAGCAGTGACATTGCTAAAACCTTCCGCAAAGCCATCAACAGGAAA
GAAGGGATTTGTGCTCTGGGAGGAACTTCAGAGTTGTCCAGTGAAGGAACCCAGCATTCCTACT
CAGAGGAAGAAAAATATGCTTTCGTTAATTGGATAAATAAAGCTTTGGAAAATGATCCCGATTG
CAGACATGTCATACCCATGAACCCAAATACTGATGACCTATTCAAAGCAGTTGGTGATGGAATT
GTGCTCTGCAAAATGATCAACCTTTCTGTTCCCGATACAATTGATGAGAGAGCAATCAATAAGA
AGAAGCTTACACCCTTCATCATTCAGGAAAACTTGAACTTGGCCCTGAATTCTGCTTCTGCCAT
TGGGTGTCACGTTGTGAACATTGGTGCCGAAGATCTGCGTGCCGGGAAACCTCATCTGGTCTTG
GGACTGCTCTGGCAGATTATTAAGATTGGCTTATTTGCTGACATTGAATTAAGCAGGAATGAAG
CACTGGCGGCTTTGCTTCGAGATGGTGAGACTCTGGAGGAGCTTATGAAATTGTCTCCAGAAGA
GCTTCTGCTGAGATGGGCCAACTTCCATCTGGAAAACTCAGGCTGGCAAAAGATCAACAACTTC
AGTGCTGACATCAAGGATTCCAAAGCCTATTTCCATCTACTCAATCAAATTGCACCGAAAGGAC
AGAAGGAAGGGGAACCACGGATAGATATTAACATGTCAGGTTTCAACGAAACAGATGATTTAAA
GAGAGCCGAAAGTATGCTTCAGCAAGCAGATAAATTAGGCTGCAGACAGTTCGTTACCCCGGCT
GATGTTGTGAGCGGAAACCCCAAACTGAACTTGGCCTTTGTAGCCAACCTCTTTAATAAATATC
CAGCACTAACTAAACCTGAGAACCAGGATATTGATTGGACTCTTCTAGAAGGAGAAACTCGTGA
AGAAAGAACCTTTCGTAACTGGATGAACTCTCTTGGTGTGAATCCCCATGTCAACCATCTCTAT
GTTGACCTGCAGGATGCCCTGGTGATCTTACAGCTGTATGAGAGAATTAAAGTTCCTGTGGACT
GGAGTAAAGTTAACAAGCCTCCATACCCAAAGCTGGGTGCCAACATGAAAAAGTTAGAAAACTG
CAACTATGCAGTTGAATTAGGGAAGAATCAAGCTAAATTCTCCTTGGTTGGCATTGGAGGACAA
GACTTGAATGATGGGAACCCAACCTTGACCTTGGCTGTAGTCTGGCAGCTGATGAGAAGATATA
CCCTTAATGTTATGGAAGATCTTGGAGAGGGTCAGAAAGCAACTGATGACATCATTGTAAACTG
GGTCAATGGAACATTGAGTGAAGCTGGAAAGTCAACTTCTATTCAGAGTTTTAAGGACAAGACG
ATCAGCTCCAGTTTGGCAGTTGTGGATTTAATTGATGCCATCCAGCCAGGCTGCATTAACTATG
ACCTTGTGAAGACTGGAAATCTAACAGAAGAAGACAAGCACAATAACGCCAAGTATGCAGTGTC
GATGGCTAGAAGAATAGGAGCCAGAGTGTATGCTCTCCCTGAAGACCTTGTGGAAGTAAAACCG
AAGATGGTCATGACCGTGTTTGCCTGTTTGATGGGCAGAGGGATGAAGAGAGTGTGAAATAGCT
AATTAGAACATTACCAACCTTACTCGCAGGTGCATGATTAGCAAGTCAGCTAGTCTCAGGTGAA
GTGCACATGGCTTCAGAAGTCTTGGTCATTTAAAGGACTTTTAGTTTTGATTAGCAAGACTAGT
TAATCATGACGGCCTTCAGAGAAAGCATTTTAATAAACAAGCAGTTCCTCTTTCCTGTAGACCT
GGATCTGTTCAGCACACCTGAACAAGCTCACAGCCAACCTTTTTGCTCTCTCCTCCTAGAATGC
TGCCCTTGACATTCCGGCTTGCTTTGTATTATCTATGTATCTTTTCCCTCCTGGGATATCCATC
TCTTGAGACTTGCATAGATGTGTAGATAGGAATATTATTAGCTCGTCATTTTGCTTTCCAAGTG
CTAGCGATTCTTTCTGAAGAACTGTGCTCTGAGGCTATATGGAGATGAGTGTTCTTTGCTTACC
TTGTAGTGCTGAAAATCTGCTGAAGTAACTGGCTGTGCAGAATGTACTAGAAGCTTTTCTCATT
CTTTTATTCTTAAAATCAGTATCTTTTTACAGTATTCTTTCTACATGATTATTTTTTTGTACAT
TTAAGAATATTTTGATTACATCCAACACGTCTGCTGATTTGCTACTTTTTTAAAAGGGGTCTTC
ATGTAAGTAAAACATACAAAGGCATAAATTATAGGTGGAGGAAAGTGGACCCGAAGGTTGCATT
TCCCCCTCATACCCAGGCTCAAATGGAATGAAATATTTTGTCTTCAATAAGTCAGTCTGATACA
TACTTCTTTGTTTGGAAATCTTTATCACAAAACTCTTTTTGGTCTACAATGCTGTTGAATATGA
CACTTTGAGGGGAGAGTGGGCTCAGAATTTAGATGGGAATTTGATAAGCAAAGAATGCTAAAGT
GTACAATATATGTTTAAGTTTCACACCTGTAACAAGGAGATGTGGTCACAAAAATGAGAAAGTA
TGTCGGACTTGATGTCCTCTTGCTCTGTCAAGCTATTTGCTATAGTTTTCAAGATCATTATGTT
ACTCTAACTCTGAAAAGTGATGTAATCTGGTAGCAACATAGTAGTCCAAATAAAGGCATTTGCA
TAATAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257434 ⟹ XP_006257496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,401,247 - 116,495,898 (+)	NCBI
mRatBN7.2	X	111,589,193 - 111,683,908 (+)	NCBI
Rnor_6.0	X	119,030,311 - 119,124,268 (+)	NCBI
Rnor_5.0	X	119,173,230 - 119,266,240 (+)	NCBI

Sequence:

show sequence

GGTTCCCAGGCCACTGGTGAACACCACCAGAGCCAATGGCTGAGGCCGCAGGGCGGAGGGGGCT
GGCGAGAGGGGAGGGAGCGCTGGCTTTAGAAGCACAGCTGCAGAGATTCCTAGGGGCAGAAGTT
GTCTGAGAGCTTGGTCGGAAGCAGTAGGGCCAGATCAGCGACTCTGCGACTTTTACATCTTCAC
ATGGACGAGATGGCAACCACTCAGATTTCCAAAGATGAGCTTGATGAACTCAAAGAGGCCTTTG
CAAAAGTTGATCTCAACAGCAATGGATTCATTTGCGACTATGAACTTCATGAGCTTTTCAAGGA
AGCGAATATGCCATTGCCCGGATATAAAGTGAGAGAAATTATTCAAAAACTCATGCTGGATGGC
GACAGAAATAAAGATGGGAAGATAAGCTTTAATGAATTTGTTTATATTTTCCAAGAGGTAAAGA
GCAGTGACATTGCTAAAACCTTCCGCAAAGCCATCAACAGGAAAGAAGGGATTTGTGCTCTGGG
AGGAACTTCAGAGTTGTCCAGTGAAGGAACCCAGCATTCCTACTCAGAGGAAGAAAAATATGCT
TTCGTTAATTGGATAAATAAAGCTTTGGAAAATGATCCCGATTGCAGACATGTCATACCCATGA
ACCCAAATACTGATGACCTATTCAAAGCAGTTGGTGATGGAATTGTGCTCTGCAAAATGATCAA
CCTTTCTGTTCCCGATACAATTGATGAGAGAGCAATCAATAAGAAGAAGCTTACACCCTTCATC
ATTCAGGAAAACTTGAACTTGGCCCTGAATTCTGCTTCTGCCATTGGGTGTCACGTTGTGAACA
TTGGTGCCGAAGATCTGCGTGCCGGGAAACCTCATCTGGTCTTGGGACTGCTCTGGCAGATTAT
TAAGATTGGCTTATTTGCTGACATTGAATTAAGCAGGAATGAAGCACTGGCGGCTTTGCTTCGA
GATGGTGAGACTCTGGAGGAGCTTATGAAATTGTCTCCAGAAGAGCTTCTGCTGAGATGGGCCA
ACTTCCATCTGGAAAACTCAGGCTGGCAAAAGATCAACAACTTCAGTGCTGACATCAAGCTCCT
TGACTTCAGTAATTCAGTGAAGGATTCCAAAGCCTATTTCCATCTACTCAATCAAATTGCACCG
AAAGGACAGAAGGAAGGGGAACCACGGATAGATATTAACATGTCAGGTTTCAACGAAACAGATG
ATTTAAAGAGAGCCGAAAGTATGCTTCAGCAAGCAGATAAATTAGGCTGCAGACAGTTCGTTAC
CCCGGCTGATGTTGTGAGCGGAAACCCCAAACTGAACTTGGCCTTTGTAGCCAACCTCTTTAAT
AAATATCCAGCACTAACTAAACCTGAGAACCAGGATATTGATTGGACTCTTCTAGAAGGAGAAA
CTCGTGAAGAAAGAACCTTTCGTAACTGGATGAACTCTCTTGGTGTGAATCCCCATGTCAACCA
TCTCTATGTTGACCTGCAGGATGCCCTGGTGATCTTACAGCTGTATGAGAGAATTAAAGTTCCT
GTGGACTGGAGTAAAGTTAACAAGCCTCCATACCCAAAGCTGGGTGCCAACATGAAAAAGTTAG
AAAACTGCAACTATGCAGTTGAATTAGGGAAGAATCAAGCTAAATTCTCCTTGGTTGGCATTGG
AGGACAAGACTTGAATGATGGGAACCCAACCTTGACCTTGGCTGTAGTCTGGCAGCTGATGAGA
AGATATACCCTTAATGTTATGGAAGATCTTGGAGAGGGTCAGAAAGCAACTGATGACATCATTG
TAAACTGGGTCAATGGAACATTGAGTGAAGCTGGAAAGTCAACTTCTATTCAGAGTTTTAAGGA
CAAGACGATCAGCTCCAGTTTGGCAGTTGTGGATTTAATTGATGCCATCCAGCCAGGCTGCATT
AACTATGACCTTGTGAAGACTGGAAATCTAACAGAAGAAGACAAGCACAATAACGCCAAGTATG
CAGTGTCGATGGCTAGAAGAATAGGAGCCAGAGTGTATGCTCTCCCTGAAGACCTTGTGGAAGT
AAAACCGAAGATGGTCATGACCGTGTTTGCCTGTTTGATGGGCAGAGGGATGAAGAGAGTGTGA
AATAGCTAATTAGAACATTACCAACCTTACTCGCAGGTGCATGATTAGCAAGTCAGCTAGTCTC
AGGTGAAGTGCACATGGCTTCAGAAGTCTTGGTCATTTAAAGGACTTTTAGTTTTGATTAGCAA
GACTAGTTAATCATGACGGCCTTCAGAGAAAGCATTTTAATAAACAAGCAGTTCCTCTTTCCTG
TAGACCTGGATCTGTTCAGCACACCTGAACAAGCTCACAGCCAACCTTTTTGCTCTCTCCTCCT
AGAATGCTGCCCTTGACATTCCGGCTTGCTTTGTATTATCTATGTATCTTTTCCCTCCTGGGAT
ATCCATCTCTTGAGACTTGCATAGATGTGTAGATAGGAATATTATTAGCTCGTCATTTTGCTTT
CCAAGTGCTAGCGATTCTTTCTGAAGAACTGTGCTCTGAGGCTATATGGAGATGAGTGTTCTTT
GCTTACCTTGTAGTGCTGAAAATCTGCTGAAGTAACTGGCTGTGCAGAATGTACTAGAAGCTTT
TCTCATTCTTTTATTCTTAAAATCAGTATCTTTTTACAGTATTCTTTCTACATGATTATTTTTT
TGTACATTTAAGAATATTTTGATTACATCCAACACGTCTGCTGATTTGCTACTTTTTTAAAAGG
GGTCTTCATGTAAGTAAAACATACAAAGGCATAAATTATAGGTGGAGGAAAGTGGACCCGAAGG
TTGCATTTCCCCCTCATACCCAGGCTCAAATGGAATGAAATATTTTGTCTTCAATAAGTCAGTC
TGATACATACTTCTTTGTTTGGAAATCTTTATCACAAAACTCTTTTTGGTCTACAATGCTGTTG
AATATGACACTTTGAGGGGAGAGTGGGCTCAGAATTTAGATGGGAATTTGATAAGCAAAGAATG
CTAAAGTGTACAATATATGTTTAAGTTTCACACCTGTAACAAGGAGATGTGGTCACAAAAATGA
GAAAGTATGTCGGACTTGATGTCCTCTTGCTCTGTCAAGCTATTTGCTATAGTTTTCAAGATCA
TTATGTTACTCTAACTCTGAAAAGTGATGTAATCTGGTAGCAACATAGTAGTCCAAATAAAGGC
ATTTGCATAATAATCGTTCTCAAA

hide sequence

RefSeq Acc Id:

XM_006257438 ⟹ XP_006257500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,435,471 - 116,495,898 (+)	NCBI
mRatBN7.2	X	111,623,522 - 111,683,908 (+)	NCBI
Rnor_6.0	X	119,064,289 - 119,124,268 (+)	NCBI
Rnor_5.0	X	119,173,230 - 119,266,240 (+)	NCBI

Sequence:

show sequence

GGCATGTACCATTATGCCCAGTAAGTATTGCATATCATTACAATCATTTGCAGGGTAAGACATG
GAACCTTAGGGCCTTTCGCATACTGGGCCAGCACTGTCTGAGCCCCAGCCCCAGTTTCAGCCCA
AAATGCTTATGGTTGTTGTCATCCTGGCTGGGAAAGCCAGGCTGAAGAGATTAAACAACTGGCA
CAGGAACACATAAACCTATTAAATTGTGGGGCTGTGAGGGATGGACACCCAGTCTGACTCTGGA
GCACTTTCTAAGGTGCCACTCCTTTTTCTGACAGAACAGTCTGGCGTACTGTGCTGCTGTCAGA
GGTTGCTCTTCCAACAGAAACCAAAGTGAAATAAGTGTGCTGCTCCAGTTAGAATCTGGAGTAT
AAATGTTGTATGTGGACTGGAATGAATAATAGAAAACATAAGCGTCCTGGGATAGTTAATTTGC
CTCTCCAAGTAATGTACTTGACTGTGGATGAGTGGCTTGGACACTGGGGAGAAGCTGTTCTTTG
TGTTCTAAAATAAGCCGGTTACTTGGCTACAGCTCAAACTCTAAATAGGTATATGGGTTGTAGC
TATTTGACCTGAAGCAACTTGAAGTTCCCTTGGTTCCCTGTCTGGTTTTAAAAGTGGAACCAAA
ACGAAAGCATAAAAGCATCAAGTTTGCTCTCAAGGTTGTGCTTCAGTTCAAATTTATTCCACCT
CTGGCAAAGGACTGCAAAGGCAGCCAGGAAGGAGATTCATCTTCACATGGACGAGATGGCAACC
ACTCAGATTTCCAAAGATGAGCTTGATGAACTCAAAGAGGCCTTTGCAAAAGTTGATCTCAACA
GCAATGGATTCATTTGCGACTATGAACTTCATGAGCTTTTCAAGGAAGCGAATATGCCATTGCC
CGGATATAAAGTGAGAGAAATTATTCAAAAACTCATGCTGGATGGCGACAGAAATAAAGATGGG
AAGATAAGCTTTAATGAATTTGTTTATATTTTCCAAGAGGTAAAGAGCAGTGACATTGCTAAAA
CCTTCCGCAAAGCCATCAACAGGAAAGAAGGGATTTGTGCTCTGGGAGGAACTTCAGAGTTGTC
CAGTGAAGGAACCCAGCATTCCTACTCAGAGGAAGAAAAATATGCTTTCGTTAATTGGATAAAT
AAAGCTTTGGAAAATGATCCCGATTGCAGACATGTCATACCCATGAACCCAAATACTGATGACC
TATTCAAAGCAGTTGGTGATGGAATTGTGCTCTGCAAAATGATCAACCTTTCTGTTCCCGATAC
AATTGATGAGAGAGCAATCAATAAGAAGAAGCTTACACCCTTCATCATTCAGGAAAACTTGAAC
TTGGCCCTGAATTCTGCTTCTGCCATTGGGTGTCACGTTGTGAACATTGGTGCCGAAGATCTGC
GTGCCGGGAAACCTCATCTGGTCTTGGGACTGCTCTGGCAGATTATTAAGATTGGCTTATTTGC
TGACATTGAATTAAGCAGGAATGAAGCACTGGCGGCTTTGCTTCGAGATGGTGAGACTCTGGAG
GAGCTTATGAAATTGTCTCCAGAAGAGCTTCTGCTGAGATGGGCCAACTTCCATCTGGAAAACT
CAGGCTGGCAAAAGATCAACAACTTCAGTGCTGACATCAAGGATTCCAAAGCCTATTTCCATCT
ACTCAATCAAATTGCACCGAAAGGACAGAAGGAAGGGGAACCACGGATAGATATTAACATGTCA
GGTTTCAACGAAACAGATGATTTAAAGAGAGCCGAAAGTATGCTTCAGCAAGCAGATAAATTAG
GCTGCAGACAGTTCGTTACCCCGGCTGATGTTGTGAGCGGAAACCCCAAACTGAACTTGGCCTT
TGTAGCCAACCTCTTTAATAAATATCCAGCACTAACTAAACCTGAGAACCAGGATATTGATTGG
ACTCTTCTAGAAGGAGAAACTCGTGAAGAAAGAACCTTTCGTAACTGGATGAACTCTCTTGGTG
TGAATCCCCATGTCAACCATCTCTATGTTGACCTGCAGGATGCCCTGGTGATCTTACAGCTGTA
TGAGAGAATTAAAGTTCCTGTGGACTGGAGTAAAGTTAACAAGCCTCCATACCCAAAGCTGGGT
GCCAACATGAAAAAGTTAGAAAACTGCAACTATGCAGTTGAATTAGGGAAGAATCAAGCTAAAT
TCTCCTTGGTTGGCATTGGAGGACAAGACTTGAATGATGGGAACCCAACCTTGACCTTGGCTGT
AGTCTGGCAGCTGATGAGAAGATATACCCTTAATGTTATGGAAGATCTTGGAGAGGGTCAGAAA
GCAACTGATGACATCATTGTAAACTGGGTCAATGGAACATTGAGTGAAGCTGGAAAGTCAACTT
CTATTCAGAGTTTTAAGGACAAGACGATCAGCTCCAGTTTGGCAGTTGTGGATTTAATTGATGC
CATCCAGCCAGGCTGCATTAACTATGACCTTGTGAAGACTGGAAATCTAACAGAAGAAGACAAG
CACAATAACGCCAAGTATGCAGTGTCGATGGCTAGAAGAATAGGAGCCAGAGTGTATGCTCTCC
CTGAAGACCTTGTGGAAGTAAAACCGAAGATGGTCATGACCGTGTTTGCCTGTTTGATGGGCAG
AGGGATGAAGAGAGTGTGAAATAGCTAATTAGAACATTACCAACCTTACTCGCAGGTGCATGAT
TAGCAAGTCAGCTAGTCTCAGGTGAAGTGCACATGGCTTCAGAAGTCTTGGTCATTTAAAGGAC
TTTTAGTTTTGATTAGCAAGACTAGTTAATCATGACGGCCTTCAGAGAAAGCATTTTAATAAAC
AAGCAGTTCCTCTTTCCTGTAGACCTGGATCTGTTCAGCACACCTGAACAAGCTCACAGCCAAC
CTTTTTGCTCTCTCCTCCTAGAATGCTGCCCTTGACATTCCGGCTTGCTTTGTATTATCTATGT
ATCTTTTCCCTCCTGGGATATCCATCTCTTGAGACTTGCATAGATGTGTAGATAGGAATATTAT
TAGCTCGTCATTTTGCTTTCCAAGTGCTAGCGATTCTTTCTGAAGAACTGTGCTCTGAGGCTAT
ATGGAGATGAGTGTTCTTTGCTTACCTTGTAGTGCTGAAAATCTGCTGAAGTAACTGGCTGTGC
AGAATGTACTAGAAGCTTTTCTCATTCTTTTATTCTTAAAATCAGTATCTTTTTACAGTATTCT
TTCTACATGATTATTTTTTTGTACATTTAAGAATATTTTGATTACATCCAACACGTCTGCTGAT
TTGCTACTTTTTTAAAAGGGGTCTTCATGTAAGTAAAACATACAAAGGCATAAATTATAGGTGG
AGGAAAGTGGACCCGAAGGTTGCATTTCCCCCTCATACCCAGGCTCAAATGGAATGAAATATTT
TGTCTTCAATAAGTCAGTCTGATACATACTTCTTTGTTTGGAAATCTTTATCACAAAACTCTTT
TTGGTCTACAATGCTGTTGAATATGACACTTTGAGGGGAGAGTGGGCTCAGAATTTAGATGGGA
ATTTGATAAGCAAAGAATGCTAAAGTGTACAATATATGTTTAAGTTTCACACCTGTAACAAGGA
GATGTGGTCACAAAAATGAGAAAGTATGTCGGACTTGATGTCCTCTTGCTCTGTCAAGCTATTT
GCTATAGTTTTCAAGATCATTATGTTACTCTAACTCTGAAAAGTGATGTAATCTGGTAGCAACA
TAGTAGTCCAAATAAAGGCATTTGCATAATAATCGTTCTCAAA

hide sequence

RefSeq Acc Id:

XM_017602163 ⟹ XP_017457652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,435,465 - 116,495,898 (+)	NCBI
mRatBN7.2	X	111,623,470 - 111,683,908 (+)	NCBI
Rnor_6.0	X	119,064,288 - 119,124,268 (+)	NCBI

Sequence:

show sequence

GGGCATGTACCATTATGCCCAGTAAGTATTGCATATCATTACAATCATTTGCAGGGTAAGACAT
GGAACCTTAGGGCCTTTCGCATACTGGGCCAGCACTGTCTGAGCCCCAGCCCCAGTTTCAGCCC
AAAATGCTTATGGTTGTTGTCATCCTGGCTGGGAAAGCCAGGCTGAAGAGATTAAACAACTGGC
ACAGGAACACATAAACCTATTAAATTGTGGGGCTGTGAGGGATGGACACCCAGTCTGACTCTGG
AGCACTTTCTAAGGTGCCACTCCTTTTTCTGACAGAACAGTCTGGCGTACTGTGCTGCTGTCAG
AGGTTGCTCTTCCAACAGAAACCAAAGTGAAATAAGTGTGCTGCTCCAGTTAGAATCTGGAGTA
TAAATGTTGTATGTGGACTGGAATGAATAATAGAAAACATAAGCGTCCTGGGATAGTTAATTTG
CCTCTCCAAGTAATGTACTTGACTGTGGATGAGTGGCTTGGACACTGGGGAGAAGCTGTTCTTT
GTGTTCTAAAATAAGCCGGTTACTTGGCTACAGCTCAAACTCTAAATAGGTATATGGGTTGTAG
CTATTTGACCTGAAGCAACTTGAAGTTCCCTTGGTTCCCTGTCTGGTTTTAAAAGTGGAACCAA
AACGAAAGCATAAAAGCATCAAGTTTGCTCTCAAGGTTGTGCTTCAGTTCAAATTTATTCCACC
TCTGGCAAAGGACTGCAAAGGCAGCCAGGAAGGAGATTCATCTTCACATGGACGAGATGGCAAC
CACTCAGATTTCCAAAGATGAGCTTGATGAACTCAAAGAGGCCTTTGCAAAAGTTGATCTCAAC
AGCAATGGATTCATTTGCGACTATGAACTTCATGAGCTTTTCAAGGAAGCGAATATGCCATTGC
CCGGATATAAAGTGAGAGAAATTATTCAAAAACTCATGCTGGATGGCGACAGAAATAAAGATGG
GAAGATAAGCTTTAATGAATTTGTTTATATTTTCCAAGAGGTAAAGAGCAGTGACATTGCTAAA
ACCTTCCGCAAAGCCATCAACAGGAAAGAAGGGATTTGTGCTCTGGGAGGAACTTCAGAGTTGT
CCAGTGAAGGAACCCAGCATTCCTACTCAGAGGAAGAAAAATATGCTTTCGTTAATTGGATAAA
TAAAGCTTTGGAAAATGATCCCGATTGCAGACATGTCATACCCATGAACCCAAATACTGATGAC
CTATTCAAAGCAGTTGGTGATGGAATTGTGCTCTGCAAAATGATCAACCTTTCTGTTCCCGATA
CAATTGATGAGAGAGCAATCAATAAGAAGAAGCTTACACCCTTCATCATTCAGGAAAACTTGAA
CTTGGCCCTGAATTCTGCTTCTGCCATTGGGTGTCACGTTGTGAACATTGGTGCCGAAGATCTG
CGTGCCGGGAAACCTCATCTGGTCTTGGGACTGCTCTGGCAGATTATTAAGATTGGCTTATTTG
CTGACATTGAATTAAGCAGGAATGAAGCACTGGCGGCTTTGCTTCGAGATGGTGAGACTCTGGA
GGAGCTTATGAAATTGTCTCCAGAAGAGCTTCTGCTGAGATGGGCCAACTTCCATCTGGAAAAC
TCAGGCTGGCAAAAGATCAACAACTTCAGTGCTGACATCAAGCTCCTTGACTTCAGTAATTCAG
TGAAGGATTCCAAAGCCTATTTCCATCTACTCAATCAAATTGCACCGAAAGGACAGAAGGAAGG
GGAACCACGGATAGATATTAACATGTCAGGTTTCAACGAAACAGATGATTTAAAGAGAGCCGAA
AGTATGCTTCAGCAAGCAGATAAATTAGGCTGCAGACAGTTCGTTACCCCGGCTGATGTTGTGA
GCGGAAACCCCAAACTGAACTTGGCCTTTGTAGCCAACCTCTTTAATAAATATCCAGCACTAAC
TAAACCTGAGAACCAGGATATTGATTGGACTCTTCTAGAAGGAGAAACTCGTGAAGAAAGAACC
TTTCGTAACTGGATGAACTCTCTTGGTGTGAATCCCCATGTCAACCATCTCTATGTTGACCTGC
AGGATGCCCTGGTGATCTTACAGCTGTATGAGAGAATTAAAGTTCCTGTGGACTGGAGTAAAGT
TAACAAGCCTCCATACCCAAAGCTGGGTGCCAACATGAAAAAGTTAGAAAACTGCAACTATGCA
GTTGAATTAGGGAAGAATCAAGCTAAATTCTCCTTGGTTGGCATTGGAGGACAAGACTTGAATG
ATGGGAACCCAACCTTGACCTTGGCTGTAGTCTGGCAGCTGATGAGAAGATATACCCTTAATGT
TATGGAAGATCTTGGAGAGGGTCAGAAAGCAACTGATGACATCATTGTAAACTGGGTCAATGGA
ACATTGAGTGAAGCTGGAAAGTCAACTTCTATTCAGAGTTTTAAGGACAAGACGATCAGCTCCA
GTTTGGCAGTTGTGGATTTAATTGATGCCATCCAGCCAGGCTGCATTAACTATGACCTTGTGAA
GACTGGAAATCTAACAGAAGAAGACAAGCACAATAACGCCAAGTATGCAGTGTCGATGGCTAGA
AGAATAGGAGCCAGAGTGTATGCTCTCCCTGAAGACCTTGTGGAAGTAAAACCGAAGATGGTCA
TGACCGTGTTTGCCTGTTTGATGGGCAGAGGGATGAAGAGAGTGTGAAATAGCTAATTAGAACA
TTACCAACCTTACTCGCAGGTGCATGATTAGCAAGTCAGCTAGTCTCAGGTGAAGTGCACATGG
CTTCAGAAGTCTTGGTCATTTAAAGGACTTTTAGTTTTGATTAGCAAGACTAGTTAATCATGAC
GGCCTTCAGAGAAAGCATTTTAATAAACAAGCAGTTCCTCTTTCCTGTAGACCTGGATCTGTTC
AGCACACCTGAACAAGCTCACAGCCAACCTTTTTGCTCTCTCCTCCTAGAATGCTGCCCTTGAC
ATTCCGGCTTGCTTTGTATTATCTATGTATCTTTTCCCTCCTGGGATATCCATCTCTTGAGACT
TGCATAGATGTGTAGATAGGAATATTATTAGCTCGTCATTTTGCTTTCCAAGTGCTAGCGATTC
TTTCTGAAGAACTGTGCTCTGAGGCTATATGGAGATGAGTGTTCTTTGCTTACCTTGTAGTGCT
GAAAATCTGCTGAAGTAACTGGCTGTGCAGAATGTACTAGAAGCTTTTCTCATTCTTTTATTCT
TAAAATCAGTATCTTTTTACAGTATTCTTTCTACATGATTATTTTTTTGTACATTTAAGAATAT
TTTGATTACATCCAACACGTCTGCTGATTTGCTACTTTTTTAAAAGGGGTCTTCATGTAAGTAA
AACATACAAAGGCATAAATTATAGGTGGAGGAAAGTGGACCCGAAGGTTGCATTTCCCCCTCAT
ACCCAGGCTCAAATGGAATGAAATATTTTGTCTTCAATAAGTCAGTCTGATACATACTTCTTTG
TTTGGAAATCTTTATCACAAAACTCTTTTTGGTCTACAATGCTGTTGAATATGACACTTTGAGG
GGAGAGTGGGCTCAGAATTTAGATGGGAATTTGATAAGCAAAGAATGCTAAAGTGTACAATATA
TGTTTAAGTTTCACACCTGTAACAAGGAGATGTGGTCACAAAAATGAGAAAGTATGTCGGACTT
GATGTCCTCTTGCTCTGTCAAGCTATTTGCTATAGTTTTCAAGATCATTATGTTACTCTAACTC
TGAAAAGTGATGTAATCTGGTAGCAACATAGTAGTCCAAATAAAGGCATTTGCATAATAATCGT
TCTCAAA

hide sequence

RefSeq Acc Id:

XM_017602164 ⟹ XP_017457653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,435,678 - 116,495,898 (+)	NCBI
mRatBN7.2	X	111,623,675 - 111,683,908 (+)	NCBI
Rnor_6.0	X	119,065,041 - 119,124,268 (+)	NCBI

Sequence:

show sequence

TATCATTTCTTTGTCAGGGTGTTCATTTGCTAGCAGGAAGTGTTGTGACTTGTTCTTTAAAGAT
GCAATTGTAAGAAGAATGTTGGGTTTCCAGATTTCAAGTTCTGGGCGTGGGAGACAGTCCTCTT
AGTACTTCAAGAAAAGAAGCAGGTTCGCTCCAGTCAGAAGGATCTTCACATGGACGAGATGGCA
ACCACTCAGATTTCCAAAGATGAGCTTGATGAACTCAAAGAGGCCTTTGCAAAAGTTGATCTCA
ACAGCAATGGATTCATTTGCGACTATGAACTTCATGAGCTTTTCAAGGAAGCGAATATGCCATT
GCCCGGATATAAAGTGAGAGAAATTATTCAAAAACTCATGCTGGATGGCGACAGAAATAAAGAT
GGGAAGATAAGCTTTAATGAATTTGTTTATATTTTCCAAGAGGTAAAGAGCAGTGACATTGCTA
AAACCTTCCGCAAAGCCATCAACAGGAAAGAAGGGATTTGTGCTCTGGGAGGAACTTCAGAGTT
GTCCAGTGAAGGAACCCAGCATTCCTACTCAGAGGAAGAAAAATATGCTTTCGTTAATTGGATA
AATAAAGCTTTGGAAAATGATCCCGATTGCAGACATGTCATACCCATGAACCCAAATACTGATG
ACCTATTCAAAGCAGTTGGTGATGGAATTGTGCTCTGCAAAATGATCAACCTTTCTGTTCCCGA
TACAATTGATGAGAGAGCAATCAATAAGAAGAAGCTTACACCCTTCATCATTCAGGAAAACTTG
AACTTGGCCCTGAATTCTGCTTCTGCCATTGGGTGTCACGTTGTGAACATTGGTGCCGAAGATC
TGCGTGCCGGGAAACCTCATCTGGTCTTGGGACTGCTCTGGCAGATTATTAAGATTGGCTTATT
TGCTGACATTGAATTAAGCAGGAATGAAGCACTGGCGGCTTTGCTTCGAGATGGTGAGACTCTG
GAGGAGCTTATGAAATTGTCTCCAGAAGAGCTTCTGCTGAGATGGGCCAACTTCCATCTGGAAA
ACTCAGGCTGGCAAAAGATCAACAACTTCAGTGCTGACATCAAGCTCCTTGACTTCAGTAATTC
AGTGAAGGATTCCAAAGCCTATTTCCATCTACTCAATCAAATTGCACCGAAAGGACAGAAGGAA
GGGGAACCACGGATAGATATTAACATGTCAGGTTTCAACGAAACAGATGATTTAAAGAGAGCCG
AAAGTATGCTTCAGCAAGCAGATAAATTAGGCTGCAGACAGTTCGTTACCCCGGCTGATGTTGT
GAGCGGAAACCCCAAACTGAACTTGGCCTTTGTAGCCAACCTCTTTAATAAATATCCAGCACTA
ACTAAACCTGAGAACCAGGATATTGATTGGACTCTTCTAGAAGGAGAAACTCGTGAAGAAAGAA
CCTTTCGTAACTGGATGAACTCTCTTGGTGTGAATCCCCATGTCAACCATCTCTATGTTGACCT
GCAGGATGCCCTGGTGATCTTACAGCTGTATGAGAGAATTAAAGTTCCTGTGGACTGGAGTAAA
GTTAACAAGCCTCCATACCCAAAGCTGGGTGCCAACATGAAAAAGTTAGAAAACTGCAACTATG
CAGTTGAATTAGGGAAGAATCAAGCTAAATTCTCCTTGGTTGGCATTGGAGGACAAGACTTGAA
TGATGGGAACCCAACCTTGACCTTGGCTGTAGTCTGGCAGCTGATGAGAAGATATACCCTTAAT
GTTATGGAAGATCTTGGAGAGGGTCAGAAAGCAACTGATGACATCATTGTAAACTGGGTCAATG
GAACATTGAGTGAAGCTGGAAAGTCAACTTCTATTCAGAGTTTTAAGGACAAGACGATCAGCTC
CAGTTTGGCAGTTGTGGATTTAATTGATGCCATCCAGCCAGGCTGCATTAACTATGACCTTGTG
AAGACTGGAAATCTAACAGAAGAAGACAAGCACAATAACGCCAAGTATGCAGTGTCGATGGCTA
GAAGAATAGGAGCCAGAGTGTATGCTCTCCCTGAAGACCTTGTGGAAGTAAAACCGAAGATGGT
CATGACCGTGTTTGCCTGTTTGATGGGCAGAGGGATGAAGAGAGTGTGAAATAGCTAATTAGAA
CATTACCAACCTTACTCGCAGGTGCATGATTAGCAAGTCAGCTAGTCTCAGGTGAAGTGCACAT
GGCTTCAGAAGTCTTGGTCATTTAAAGGACTTTTAGTTTTGATTAGCAAGACTAGTTAATCATG
ACGGCCTTCAGAGAAAGCATTTTAATAAACAAGCAGTTCCTCTTTCCTGTAGACCTGGATCTGT
TCAGCACACCTGAACAAGCTCACAGCCAACCTTTTTGCTCTCTCCTCCTAGAATGCTGCCCTTG
ACATTCCGGCTTGCTTTGTATTATCTATGTATCTTTTCCCTCCTGGGATATCCATCTCTTGAGA
CTTGCATAGATGTGTAGATAGGAATATTATTAGCTCGTCATTTTGCTTTCCAAGTGCTAGCGAT
TCTTTCTGAAGAACTGTGCTCTGAGGCTATATGGAGATGAGTGTTCTTTGCTTACCTTGTAGTG
CTGAAAATCTGCTGAAGTAACTGGCTGTGCAGAATGTACTAGAAGCTTTTCTCATTCTTTTATT
CTTAAAATCAGTATCTTTTTACAGTATTCTTTCTACATGATTATTTTTTTGTACATTTAAGAAT
ATTTTGATTACATCCAACACGTCTGCTGATTTGCTACTTTTTTAAAAGGGGTCTTCATGTAAGT
AAAACATACAAAGGCATAAATTATAGGTGGAGGAAAGTGGACCCGAAGGTTGCATTTCCCCCTC
ATACCCAGGCTCAAATGGAATGAAATATTTTGTCTTCAATAAGTCAGTCTGATACATACTTCTT
TGTTTGGAAATCTTTATCACAAAACTCTTTTTGGTCTACAATGCTGTTGAATATGACACTTTGA
GGGGAGAGTGGGCTCAGAATTTAGATGGGAATTTGATAAGCAAAGAATGCTAAAGTGTACAATA
TATGTTTAAGTTTCACACCTGTAACAAGGAGATGTGGTCACAAAAATGAGAAAGTATGTCGGAC
TTGATGTCCTCTTGCTCTGTCAAGCTATTTGCTATAGTTTTCAAGATCATTATGTTACTCTAAC
TCTGAAAAGTGATGTAATCTGGTAGCAACATAGTAGTCCAAATAAAGGCATTTGCATAATAATC
GTTCTCAAA

hide sequence

RefSeq Acc Id:

XM_063280325 ⟹ XP_063136395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,410,687 - 116,495,898 (+)	NCBI

RefSeq Acc Id:

XM_063280326 ⟹ XP_063136396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,401,821 - 116,495,898 (+)	NCBI

RefSeq Acc Id:

XM_063280327 ⟹ XP_063136397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	116,435,678 - 116,495,898 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_112346	(Get FASTA)	NCBI Sequence Viewer
	XP_006257496	(Get FASTA)	NCBI Sequence Viewer
	XP_006257500	(Get FASTA)	NCBI Sequence Viewer
	XP_017457652	(Get FASTA)	NCBI Sequence Viewer
	XP_017457653	(Get FASTA)	NCBI Sequence Viewer
	XP_063136395	(Get FASTA)	NCBI Sequence Viewer
	XP_063136396	(Get FASTA)	NCBI Sequence Viewer
	XP_063136397	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92611	(Get FASTA)	NCBI Sequence Viewer
	CAA50037	(Get FASTA)	NCBI Sequence Viewer
	EDL85165	(Get FASTA)	NCBI Sequence Viewer
	EDL85166	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056912
	ENSRNOP00000100088
	ENSRNOP00000107822
GenBank Protein	Q63598	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112346 ⟸ NM_031084

- UniProtKB:

Q63598 (UniProtKB/Swiss-Prot), A6KGB3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEMATTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG
DRNKDGKISFNEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA
FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI
IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR
DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPR
IDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPE
NQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYVDLQDALVILQLYERIKVPVDWSKVNKP
PYPKLGANMKKLENCNYAVELGKNQAKFSLVGIGGQDLNDGNPTLTLAVVWQLMRRYTLNVMED
LGEGQKATDDIIVNWVNGTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKTGN
LTEEDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV

hide sequence

RefSeq Acc Id:	XP_006257496 ⟸ XM_006257434
- Peptide Label:	isoform X1
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDEMATTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG DRNKDGKISFNEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKLLDFSNSVKDSKAYFHLLNQIAP KGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN KYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYVDLQDALVILQLYERIKVP VDWSKVNKPPYPKLGANMKKLENCNYAVELGKNQAKFSLVGIGGQDLNDGNPTLTLAVVWQLMR RYTLNVMEDLGEGQKATDDIIVNWVNGTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI NYDLVKTGNLTEEDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV hide sequence

RefSeq Acc Id:	XP_006257500 ⟸ XM_006257438
- Peptide Label:	isoform X3
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot), A6KGB3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEMATTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG DRNKDGKISFNEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPR IDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPE NQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYVDLQDALVILQLYERIKVPVDWSKVNKP PYPKLGANMKKLENCNYAVELGKNQAKFSLVGIGGQDLNDGNPTLTLAVVWQLMRRYTLNVMED LGEGQKATDDIIVNWVNGTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKTGN LTEEDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV hide sequence

RefSeq Acc Id:	XP_017457652 ⟸ XM_017602163
- Peptide Label:	isoform X1
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDEMATTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG DRNKDGKISFNEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKLLDFSNSVKDSKAYFHLLNQIAP KGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN KYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYVDLQDALVILQLYERIKVP VDWSKVNKPPYPKLGANMKKLENCNYAVELGKNQAKFSLVGIGGQDLNDGNPTLTLAVVWQLMR RYTLNVMEDLGEGQKATDDIIVNWVNGTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI NYDLVKTGNLTEEDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV hide sequence

RefSeq Acc Id:	XP_017457653 ⟸ XM_017602164
- Peptide Label:	isoform X1
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDEMATTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG DRNKDGKISFNEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKLLDFSNSVKDSKAYFHLLNQIAP KGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN KYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYVDLQDALVILQLYERIKVP VDWSKVNKPPYPKLGANMKKLENCNYAVELGKNQAKFSLVGIGGQDLNDGNPTLTLAVVWQLMR RYTLNVMEDLGEGQKATDDIIVNWVNGTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI NYDLVKTGNLTEEDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV hide sequence

Ensembl Acc Id:

ENSRNOP00000056912 ⟸ ENSRNOT00000060168

RefSeq Acc Id:	XP_063136396 ⟸ XM_063280326
- Peptide Label:	isoform X2
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063136395 ⟸ XM_063280325
- Peptide Label:	isoform X1
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063136397 ⟸ XM_063280327
- Peptide Label:	isoform X3
- UniProtKB:	Q63598 (UniProtKB/Swiss-Prot), A6KGB3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100088 ⟸ ENSRNOT00000139298

Ensembl Acc Id:

ENSRNOP00000109117 ⟸ ENSRNOT00000162443

Ensembl Acc Id:

ENSRNOP00000107822 ⟸ ENSRNOT00000158329

Protein Domains

Calponin-homology (CH) EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63598-F1-model_v2	AlphaFold	Q63598	1-630	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701972

Promoter ID:

EPDNEW_R12496

Type:

multiple initiation site

Name:

Pls3_1

Description:

plastin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	119,030,430 - 119,030,490	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621409	AgrOrtholog
BioCyc Gene	G2FUF-1433	BioCyc
Ensembl Genes	ENSRNOG00000027520	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000060168	ENTREZGENE
	ENSRNOT00000139298	ENTREZGENE
	ENSRNOT00000158329	ENTREZGENE
Gene3D-CATH	1.10.418.10	UniProtKB/Swiss-Prot
	EF-hand	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7311086	IMAGE-MGC_LOAD
InterPro	Actinin_actin-bd_CS	UniProtKB/Swiss-Prot
	CH-domain	UniProtKB/Swiss-Prot
	CH_dom_sf	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	Fimbrin/Plastin	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109253	IMAGE-MGC_LOAD
NCBI Gene	81748	ENTREZGENE
PANTHER	PTHR19961	UniProtKB/Swiss-Prot
	PTHR19961:SF32	UniProtKB/Swiss-Prot
Pfam	EF-hand_7	UniProtKB/Swiss-Prot
	PF00307	UniProtKB/Swiss-Prot
PhenoGen	Pls3	PhenoGen
PROSITE	ACTININ_1	UniProtKB/Swiss-Prot
	ACTININ_2	UniProtKB/Swiss-Prot
	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
	PS50021	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000027520	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot
	SM00033	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
	SSF47576	UniProtKB/Swiss-Prot
UniProt	A0ABK0L6X7_RAT	UniProtKB/TrEMBL
	A0ABK0LV03_RAT	UniProtKB/TrEMBL
	A0ABK0LV27_RAT	UniProtKB/TrEMBL
	A6KGB3	ENTREZGENE, UniProtKB/TrEMBL
	F1LPK7_RAT	UniProtKB/TrEMBL
	PLST_RAT	UniProtKB/Swiss-Prot
	Q562B2_RAT	UniProtKB/TrEMBL
	Q63598	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Pls3	plastin 3	Pls3	plastin 3 (T-isoform)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-02-26	Pls3	plastin 3 (T-isoform)			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Pls3	plastin 3 (T-isoform)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in stereocilia in the developing cochlea	731234
gene_product	member of the plastins/fimbrin family of actin bundling proteins	731234

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations