Pls3 (plastin 3) - Rat Genome Database

Name: Pls3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Pls3 (plastin 3) Chinchilla lanigera

Analyze

Symbol:

Pls3

Name:

plastin 3

RGD ID:

8946074

Description:

ENCODES a protein that exhibits structural constituent of presynaptic actin cytoskeleton (ortholog); INVOLVED IN bone development (ortholog); inner ear auditory receptor cell differentiation (ortholog); regulation of synaptic vesicle cycle (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Anterior Diaphragmatic Hernia (ortholog); autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuromuscular junction (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

plastin-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLS3 (plastin 3)	NCBI	Ortholog
Mus musculus (house mouse):	Pls3 (plastin 3 (T-isoform))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLS3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pls3 (plastin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	122,328 - 221,388 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955490	125,913 - 221,152 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anterior Diaphragmatic Hernia (ISO)

autistic disorder (ISO)

Chemical and Drug Induced Liver Injury (ISO)

congenital diaphragmatic hernia (ISO)

genetic disease (ISO)

osteoarthritis (ISO)

osteogenesis imperfecta (ISO)

osteoporosis (ISO)

Postmenopausal Osteoporosis (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bone development (ISO)

inner ear auditory receptor cell differentiation (ISO)

regulation of synaptic vesicle cycle (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

neuromuscular junction (ISO)

plasma membrane (ISO)

stereocilium (ISO)

Molecular Function

structural constituent of presynaptic actin cytoskeleton (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pls3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	122,328 - 221,388 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955490	125,913 - 221,152 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	115,561,174 - 115,650,861 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	115,561,174 - 115,650,861 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	114,795,501 - 114,885,181 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	114,701,765 - 114,791,246 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	114,618,488 - 114,707,970	NCBI
Celera	X	115,230,242 - 115,320,243 (+)	NCBI		Celera
Cytogenetic Map	X	q23	NCBI
HuRef	X	104,379,340 - 104,468,198 (+)	NCBI		HuRef
CHM1_1	X	114,706,001 - 114,796,082 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	113,969,539 - 114,059,207 (+)	NCBI		T2T-CHM13v2.0

Pls3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	74,829,259 - 74,918,788 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	74,829,260 - 74,918,788 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	75,785,653 - 75,875,182 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	75,785,654 - 75,875,182 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	73,030,993 - 73,120,509 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	72,038,383 - 72,127,258 (-)	NCBI		MGSCv36	mm8
Celera	X	67,188,917 - 67,297,722 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	38.3	NCBI

Pls3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	116,401,247 - 116,495,898 (+)	NCBI		GRCr8
mRatBN7.2	X	111,589,193 - 111,683,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	111,589,254 - 111,683,891 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	113,692,615 - 113,779,538 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	117,183,401 - 117,270,327 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	114,734,740 - 114,821,667 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	119,030,311 - 119,124,268 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	119,030,419 - 119,124,250 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	119,173,230 - 119,266,240 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	29,868,937 - 29,965,118 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	29,923,513 - 29,982,843 (-)	NCBI
Celera	X	110,881,127 - 110,971,056 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

PLS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	115,004,895 - 115,098,747 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	115,012,733 - 115,102,356 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	104,656,110 - 104,745,702 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	115,160,032 - 115,250,144 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	115,160,032 - 115,250,144 (+)	Ensembl	panpan1.1		panPan2

PLS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	88,308,817 - 88,399,682 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	88,308,888 - 88,398,810 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	74,429,089 - 74,519,776 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	90,023,698 - 90,114,659 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	90,022,719 - 90,117,154 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	87,466,392 - 87,557,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	89,141,351 - 89,232,259 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	88,976,701 - 89,067,622 (+)	NCBI		UU_Cfam_GSD_1.0

Pls3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	87,322,781 - 87,411,736 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	246,042 - 335,440 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	246,042 - 335,440 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	94,885,118 - 94,971,659 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	94,885,098 - 94,971,664 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	109,452,808 - 109,539,961 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	28,495,210 - 28,582,236 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pls3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624940	120,073 - 216,622 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624940	120,073 - 216,522 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005404619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013504543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01060059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01060060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01060061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01031000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000002042 ⟹ ENSCLAP00000001997

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955490	122,328 - 221,388 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000002043 ⟹ ENSCLAP00000001998

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955490	122,328 - 221,388 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000002044 ⟹ ENSCLAP00000001999

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955490	122,328 - 179,302 (-)	Ensembl

RefSeq Acc Id:

XM_005404619 ⟹ XP_005404676

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955490	125,913 - 221,152 (-)	NCBI

Sequence:

show sequence

AGCGCTGGCTTTAGAACCGCAGCCGCAAACATTCCAAGGGGCAGAAGTTGCCTGAGTGCGCTGG
TCGGAGGTTGTCGGCCCAGACCGGGGACTCTGCGACTTTACATCTTTAAATGGATGAGATGGCT
GCCACTCAGATTTCCAAAGATGAGCTTGACGAACTCAAAGAGGCCTTTGCAAAAGTTGATCTCA
ACAGCAATGGATTCATTTGTGACTATGAACTTCATGAACTGTTCAAGGAAGCTAATATGCCATT
GCCTGGATATAAAGTGAGAGAAATTATTCAAAAACTCATGCTGGATGGTGACAGAAATAAAGAT
GGGAAGATAAGTTTTGATGAATTTGTTTATATTTTCCAAGAGGTAAAAAGCAGCGATATCGCTA
AAACTTTCCGCAAAGCAATCAACAGGAAAGAAGGGATTTGTGCTCTGGGAGGAACTTCCGAGTT
GTCTAGCGAAGGAACACAGCATTCATACTCAGAGGAAGAAAAATATGCTTTTGTTAACTGGATA
AACAAAGCTTTGGAAAATGATCCTGATTGCAGACACGTTATACCAATGAATCCAAATACTGATG
ACCTGTTCAAAGCTGTTGGTGATGGAATTGTGCTTTGTAAAATGATCAACCTCTCCGTTCCTGA
TACCATTGATGAGAGGGCAATCAACAAAAAGAAACTCACACCCTTCATCATTCAGGAAAACTTG
AACTTGGCATTGAACTCTGCTTCTGCCATTGGATGTCATGTTGTGAATATTGGTGCAGAGGATT
TGCGGGCTGGGAAACCTCATCTGGTCTTGGGACTGCTTTGGCAGATCATTAAGATTGGTTTGTT
TGCCGACATTGAATTAAGCAGGAATGAAGCCTTGGCTGCCTTACTTCGAGATGGTGAGACCTTG
GAAGAACTTATGAAATTGTCTCCAGAAGAGCTTCTGCTTAGATGGGCAAACTTTCATTTGGAAA
ACTCAGGCTGGCAAAAAATCAACAACTTCAGTGCTGACATCAAGGATTCCAAAGCTTATTTCCA
TCTTCTCAATCAAATTGCACCAAAAGGACAAAAGGAAGGTGAATCACGGATAGATATTAACATG
TCAGGTTTCAATGAAACAGATGATTTGAAGAGAGCTGAAAGTATGCTTCAACAGGCAGATAAAT
TAGGTTGCAGACAGTTTGTTACCCCTGCTGATGTTGTCAGTGGAAACCCCAAACTGAATTTAGC
CTTTGTGGCTAACCTGTTTAATAAATACCCAGCACTAACTAAGCCAGAGAACCAGGATATTGAC
TGGACTCTATTAGAAGGAGAAACTCGGGAAGAAAGAACTTTCCGTAACTGGATGAACTCTCTTG
GTGTTAATCCCCACGTAAACCATCTCTATGCTGACCTGCAAGATGCCCTGGTAATCTTACAATT
ATATGAGAGAATTAAAGTTCCTGTGGACTGGAGTAAGGTCAATAAACCTCCATATCCAAAACTT
GGAGCCAACATGAAAAAGCTAGAAAACTGCAACTATGCTGTTGAATTAGGGAAGCATCCTGCTA
AATTCTCCCTGGTTGGCATTGGAGGACAAGACCTCAATGATGGGAACCAAACCTTGACCTTAGC
TTTAATCTGGCAGCTGATGAGAAGATATACTCTCAATGTCCTGGAGGACCTGGGAGAGGGTCAG
AAAGCCAATGATGATATTATTGTAAACTGGGTGAACAGAACGTTGTATGAAGCTGGAAAATCAA
CTTCTATTCAGAGTTTTAAGGACAAGACGATTAGCTCCAGTTTGGCAGTTGTGGATTTAATTGA
TGCCATCCAACCAGGCTGCATAAACTATGACCTTGTCAAGAGCGGCAATCTAACAGAAGATGAC
AAGCACAACAATGCCAAGTATGCTGTGTCAATGGCTAGAAGAATTGGAGCCAGAGTGTATGCCC
TCCCTGAAGACCTTGTGGAAGTGAAGCCCAAAATGGTCATGACTGTGTTTGCATGTTTGATGGG
CAGGGGGATGAAGCGAGTGTAAAATAACCAACCTGAATAAAACCAACCTTATTCCCAAGTGCAT
GATTAGCAAGTCAGCTGTTTTCAGGTGAAGTCCTCATGGCTTAAGGAATTCGTGACCATTTAAA
GGACTAGTTTTGATTAACAAGACTAGCTCATCATGAGACCACTCAGGGGAAAGAGTTTTAATGG
AAACGGCTTTTCTTTCCCATAGTCAGAGTTGGATTTGTCAGGCACACCTGAAATGTTCTTGTAG
CCAAACTATCTTACTCTCTCCTCCTAGAATGCCGCCCCTGATAGTTCTCATTGCTGTGTGTTAT
TTCTCTACGTATCTTTTTCCCTCTTAGAACATCCACCTATTGAGACTTGCTTAGATGATTGAAA
ATTAATATTAATAGACAGTCGTTTTCCTTTCCATCCAGGATGCTAGTTCTTACCCGAGAACTAC
GGTCAGAAGGTTTTTGGATATGAGTATCCTTTGCTTACTTTGTAGTACTGAAAATTTGCCAAAG
TAACTGGCTATGCAGAATGTAAGAGCTTTTCTTATTCTTTTATTCTTAAAATCAGTATCTTTTT
ACAGTATTCTTTCTACATGATCCTTTTTTTGTACATTTAAGAATATTTTGATTACATTCAATAA
GACTGCTGATTTTGCTACTTTTTTAAAGGGATCTTCAAGTAAGTCAAAAGCATACATTATAGGT
AGAGGCACCATGTACCCTAAATTTGCATCTCCCCTCTCACACCCAAGATGTAAACAAAGGAAAT
ATTTTGTCTTAAATCACTTGGTTCTATACATGCTTATTTGTTTTACAACCTGCATCATCAAACT
CTCTCTTTAAATTTAAAATACTGTTGGACAGGACAGTTGGGGAGAGAGTGAGGTCAGAGTGTAG
GTGGGATACGGTAGGCTAAGCATGCTCTGTGTACAATATATTTTTTAATGTTACACCTACAACA
AAGAGATGTGGTCACTAAAAAGTAAAAGTATATATGTAGGACTTAACGTACTCTTGCTTTGTCA
AACTGTTTGCTATAGTTTTCAAGATGATTATGTTACTCTAACTCTGAAAAGTGATGTAATCTGG
TAGCAATGTAGTGGTTCAAATAAAGGCATTTACATAATAA

hide sequence

RefSeq Acc Id:

XM_013504543 ⟹ XP_013359997

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955490	125,913 - 179,072 (-)	NCBI

Sequence:

show sequence

GAATGTTGGGTTTCCAGATTGCCAGTTCTGGGTGTGGGAGAAGGTTCTTTCTATTGGTGCAACG
AGAAAGGAAAGAAACAAGAAACAGGTTTGCTCTCGCCGCAGAAGGATCTTTAAATGGATGAGAT
GGCTGCCACTCAGATTTCCAAAGATGAGCTTGACGAACTCAAAGAGGCCTTTGCAAAAGTTGAT
CTCAACAGCAATGGATTCATTTGTGACTATGAACTTCATGAACTGTTCAAGGAAGCTAATATGC
CATTGCCTGGATATAAAGTGAGAGAAATTATTCAAAAACTCATGCTGGATGGTGACAGAAATAA
AGATGGGAAGATAAGTTTTGATGAATTTGTTTATATTTTCCAAGAGGTAAAAAGCAGCGATATC
GCTAAAACTTTCCGCAAAGCAATCAACAGGAAAGAAGGGATTTGTGCTCTGGGAGGAACTTCCG
AGTTGTCTAGCGAAGGAACACAGCATTCATACTCAGAGGAAGAAAAATATGCTTTTGTTAACTG
GATAAACAAAGCTTTGGAAAATGATCCTGATTGCAGACACGTTATACCAATGAATCCAAATACT
GATGACCTGTTCAAAGCTGTTGGTGATGGAATTGTGCTTTGTAAAATGATCAACCTCTCCGTTC
CTGATACCATTGATGAGAGGGCAATCAACAAAAAGAAACTCACACCCTTCATCATTCAGGAAAA
CTTGAACTTGGCATTGAACTCTGCTTCTGCCATTGGATGTCATGTTGTGAATATTGGTGCAGAG
GATTTGCGGGCTGGGAAACCTCATCTGGTCTTGGGACTGCTTTGGCAGATCATTAAGATTGGTT
TGTTTGCCGACATTGAATTAAGCAGGAATGAAGCCTTGGCTGCCTTACTTCGAGATGGTGAGAC
CTTGGAAGAACTTATGAAATTGTCTCCAGAAGAGCTTCTGCTTAGATGGGCAAACTTTCATTTG
GAAAACTCAGGCTGGCAAAAAATCAACAACTTCAGTGCTGACATCAAGGATTCCAAAGCTTATT
TCCATCTTCTCAATCAAATTGCACCAAAAGGACAAAAGGAAGGTGAATCACGGATAGATATTAA
CATGTCAGGTTTCAATGAAACAGATGATTTGAAGAGAGCTGAAAGTATGCTTCAACAGGCAGAT
AAATTAGGTTGCAGACAGTTTGTTACCCCTGCTGATGTTGTCAGTGGAAACCCCAAACTGAATT
TAGCCTTTGTGGCTAACCTGTTTAATAAATACCCAGCACTAACTAAGCCAGAGAACCAGGATAT
TGACTGGACTCTATTAGAAGGAGAAACTCGGGAAGAAAGAACTTTCCGTAACTGGATGAACTCT
CTTGGTGTTAATCCCCACGTAAACCATCTCTATGCTGACCTGCAAGATGCCCTGGTAATCTTAC
AATTATATGAGAGAATTAAAGTTCCTGTGGACTGGAGTAAGGTCAATAAACCTCCATATCCAAA
ACTTGGAGCCAACATGAAAAAGCTAGAAAACTGCAACTATGCTGTTGAATTAGGGAAGCATCCT
GCTAAATTCTCCCTGGTTGGCATTGGAGGACAAGACCTCAATGATGGGAACCAAACCTTGACCT
TAGCTTTAATCTGGCAGCTGATGAGAAGATATACTCTCAATGTCCTGGAGGACCTGGGAGAGGG
TCAGAAAGCCAATGATGATATTATTGTAAACTGGGTGAACAGAACGTTGTATGAAGCTGGAAAA
TCAACTTCTATTCAGAGTTTTAAGGACAAGACGATTAGCTCCAGTTTGGCAGTTGTGGATTTAA
TTGATGCCATCCAACCAGGCTGCATAAACTATGACCTTGTCAAGAGCGGCAATCTAACAGAAGA
TGACAAGCACAACAATGCCAAGTATGCTGTGTCAATGGCTAGAAGAATTGGAGCCAGAGTGTAT
GCCCTCCCTGAAGACCTTGTGGAAGTGAAGCCCAAAATGGTCATGACTGTGTTTGCATGTTTGA
TGGGCAGGGGGATGAAGCGAGTGTAAAATAACCAACCTGAATAAAACCAACCTTATTCCCAAGT
GCATGATTAGCAAGTCAGCTGTTTTCAGGTGAAGTCCTCATGGCTTAAGGAATTCGTGACCATT
TAAAGGACTAGTTTTGATTAACAAGACTAGCTCATCATGAGACCACTCAGGGGAAAGAGTTTTA
ATGGAAACGGCTTTTCTTTCCCATAGTCAGAGTTGGATTTGTCAGGCACACCTGAAATGTTCTT
GTAGCCAAACTATCTTACTCTCTCCTCCTAGAATGCCGCCCCTGATAGTTCTCATTGCTGTGTG
TTATTTCTCTACGTATCTTTTTCCCTCTTAGAACATCCACCTATTGAGACTTGCTTAGATGATT
GAAAATTAATATTAATAGACAGTCGTTTTCCTTTCCATCCAGGATGCTAGTTCTTACCCGAGAA
CTACGGTCAGAAGGTTTTTGGATATGAGTATCCTTTGCTTACTTTGTAGTACTGAAAATTTGCC
AAAGTAACTGGCTATGCAGAATGTAAGAGCTTTTCTTATTCTTTTATTCTTAAAATCAGTATCT
TTTTACAGTATTCTTTCTACATGATCCTTTTTTTGTACATTTAAGAATATTTTGATTACATTCA
ATAAGACTGCTGATTTTGCTACTTTTTTAAAGGGATCTTCAAGTAAGTCAAAAGCATACATTAT
AGGTAGAGGCACCATGTACCCTAAATTTGCATCTCCCCTCTCACACCCAAGATGTAAACAAAGG
AAATATTTTGTCTTAAATCACTTGGTTCTATACATGCTTATTTGTTTTACAACCTGCATCATCA
AACTCTCTCTTTAAATTTAAAATACTGTTGGACAGGACAGTTGGGGAGAGAGTGAGGTCAGAGT
GTAGGTGGGATACGGTAGGCTAAGCATGCTCTGTGTACAATATATTTTTTAATGTTACACCTAC
AACAAAGAGATGTGGTCACTAAAAAGTAAAAGTATATATGTAGGACTTAACGTACTCTTGCTTT
GTCAAACTGTTTGCTATAGTTTTCAAGATGATTATGTTACTCTAACTCTGAAAAGTGATGTAAT
CTGGTAGCAATGTAGTGGTTCAAATAAAGGCATTTACATAATAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005404676	(Get FASTA)	NCBI Sequence Viewer
	XP_013359997	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000001997.1
	ENSCLAP00000001998
	ENSCLAP00000001998.1
	ENSCLAP00000001999
	ENSCLAP00000001999.1

RefSeq Acc Id:

XP_005404676 ⟸ XM_005404619

- UniProtKB:

A0A8C2UJW3 (UniProtKB/TrEMBL), A0A8C2UPS8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEMAATQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG
DRNKDGKISFDEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA
FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI
IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR
DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGESR
IDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPE
NQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYADLQDALVILQLYERIKVPVDWSKVNKP
PYPKLGANMKKLENCNYAVELGKHPAKFSLVGIGGQDLNDGNQTLTLALIWQLMRRYTLNVLED
LGEGQKANDDIIVNWVNRTLYEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN
LTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV

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RefSeq Acc Id:

XP_013359997 ⟸ XM_013504543

- UniProtKB:

A0A8C2UJW3 (UniProtKB/TrEMBL), A0A8C2UPS8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEMAATQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDG
DRNKDGKISFDEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYA
FVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFI
IQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLR
DGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGESR
IDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPE
NQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYADLQDALVILQLYERIKVPVDWSKVNKP
PYPKLGANMKKLENCNYAVELGKHPAKFSLVGIGGQDLNDGNQTLTLALIWQLMRRYTLNVLED
LGEGQKANDDIIVNWVNRTLYEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN
LTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV

hide sequence

RefSeq Acc Id:

ENSCLAP00000001998 ⟸ ENSCLAT00000002043

RefSeq Acc Id:

ENSCLAP00000001997 ⟸ ENSCLAT00000002042

RefSeq Acc Id:

ENSCLAP00000001999 ⟸ ENSCLAT00000002044

Protein Domains

Calponin-homology (CH) EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000001460	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000002042.1	UniProtKB/TrEMBL
	ENSCLAT00000002043	ENTREZGENE
	ENSCLAT00000002043.1	UniProtKB/TrEMBL
	ENSCLAT00000002044	ENTREZGENE
	ENSCLAT00000002044.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	Actinin_actin-bd_CS	UniProtKB/TrEMBL
	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Fimbrin/Plastin	UniProtKB/TrEMBL
NCBI Gene	Pls3	ENTREZGENE
PANTHER	PTHR19961	UniProtKB/TrEMBL
	PTHR19961:SF32	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	PF00307	UniProtKB/TrEMBL
PROSITE	ACTININ_1	UniProtKB/TrEMBL
	ACTININ_2	UniProtKB/TrEMBL
	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	PS50021	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
	SM00033	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
	SSF47576	UniProtKB/TrEMBL
UniProt	A0A8C2UJW3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UPS8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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