Advanced Search (OLGA)

Gene: Lgals8 (galectin 8) Rattus norvegicus

Analyze

Symbol:

Lgals8

Name:

galectin 8

RGD ID:

621272

Description:

Predicted to enable carbohydrate binding activity and integrin binding activity. Predicted to be involved in cellular response to virus; lymphatic endothelial cell migration; and xenophagy. Predicted to act upstream of or within T cell costimulation and plasma cell differentiation. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human LGALS8 (galectin 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

30 kDa S-type lectin; gal-8; galectin-8; lectin, galactose binding, soluble 8; lectin, galactoside-binding, soluble 8; lectin, galactoside-binding, soluble, 8; RL-30

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LGALS8 (galectin 8)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Lgals8 (lectin, galactose binding, soluble 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lgals8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LGALS8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LGALS8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lgals8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LGALS8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LGALS8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lgals8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lgals8 (galectin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Lgals8 (lectin, galactose binding, soluble 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LGALS8 (galectin 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lgals8a (galectin 8a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lgals8b (galectin 8b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lgals8b (galectin 8b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG11374	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11374	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lec-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lec-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lec-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lec-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lec-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lec-5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C53D6.7	Alliance	DIOPT (Hieranoid\|OrthoFinder\|SonicParanoid)
Drosophila melanogaster (fruit fly):	galectin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lgals8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lgals8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Related Pseudogenes:

Lgals8-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	62,716,368 - 62,744,272 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	62,719,828 - 62,744,482 (+)	Ensembl				GRCr8
mRatBN7.2	17	58,024,652 - 58,052,764 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	58,028,105 - 58,052,764 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	61,217,535 - 61,242,070 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	65,220,645 - 65,245,181 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	59,374,848 - 59,399,383 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	66,487,451 - 66,515,316 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	66,487,457 - 66,511,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	68,232,995 - 68,261,071 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	68,589,595 - 68,614,014 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	62,481,132 - 62,505,453 (-)	NCBI		Celera
RGSC_v3.1	17	68,600,427 - 68,624,843 (+)	NCBI
Cytogenetic Map	17	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3-methylcholanthrene (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

5-formyltetrahydrofolic acid (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clofibrate (ISO)

clozapine (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dimethylarsinic acid (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

inulin (ISO)

irinotecan (ISO)

leflunomide (EXP)

menadione (ISO)

mercury dibromide (ISO)

methimazole (EXP)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nefazodone (EXP)

nickel sulfate (ISO)

niclosamide (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phorbol 13-acetate 12-myristate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propiconazole (EXP)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (IEA)

biological_process (ND)

cellular response to virus (ISO,ISS)

lymphatic endothelial cell migration (ISO,ISS)

plasma cell differentiation (ISO)

T cell costimulation (ISO)

xenophagy (ISO,ISS)

Cellular Component

cytoplasm (IBA,ISO,ISS)

cytoplasmic vesicle (IEA)

cytosol (IEA,ISO,ISS)

Molecular Function

carbohydrate binding (IBA,IEA,ISO,ISS)

integrin binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Galectin-8. A new rat lectin, related to galectin-4.	Hadari YR, etal., J Biol Chem 1995 Feb 17;270(7):3447-53.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19268462	PMID:19946888	PMID:21753146	PMID:22246324	PMID:22357632	PMID:23376485	PMID:28077878

Genomics

Comparative Map Data

Lgals8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	62,716,368 - 62,744,272 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	62,719,828 - 62,744,482 (+)	Ensembl				GRCr8
mRatBN7.2	17	58,024,652 - 58,052,764 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	58,028,105 - 58,052,764 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	61,217,535 - 61,242,070 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	65,220,645 - 65,245,181 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	59,374,848 - 59,399,383 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	66,487,451 - 66,515,316 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	66,487,457 - 66,511,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	68,232,995 - 68,261,071 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	68,589,595 - 68,614,014 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	62,481,132 - 62,505,453 (-)	NCBI		Celera
RGSC_v3.1	17	68,600,427 - 68,624,843 (+)	NCBI
Cytogenetic Map	17	q12.1	NCBI

LGALS8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	236,518,214 - 236,552,981 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	236,518,000 - 236,552,981 (+)	Ensembl			hg38	GRCh38
GRCh37	1	236,681,514 - 236,716,281 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	234,748,188 - 234,779,619 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	233,007,605 - 233,039,037	NCBI
Celera	1	209,929,863 - 209,961,279 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI
HuRef	1	207,138,181 - 207,173,297 (+)	NCBI		HuRef
CHM1_1	1	237,954,415 - 237,989,174 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	235,919,116 - 235,953,936 (+)	NCBI		T2T-CHM13v2.0

Lgals8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	12,454,283 - 12,479,857 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	12,454,296 - 12,479,825 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	12,439,402 - 12,464,977 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	12,439,415 - 12,464,944 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	12,531,686 - 12,553,757 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	12,493,757 - 12,515,752 (-)	NCBI		MGSCv36	mm8
Celera	13	12,355,672 - 12,377,742 (-)	NCBI		Celera
Cytogenetic Map	13	A1	NCBI
cM Map	13	4.64	NCBI

Lgals8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	3,673,233 - 3,693,776 (-)	Ensembl
ChiLan1.0	NW_004955492	3,673,233 - 3,693,777 (-)	NCBI	ChiLan1.0	ChiLan1.0

LGALS8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	12,636,843 - 12,669,351 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	12,849,686 - 12,881,558 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	212,083,584 - 212,112,182 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	217,078,628 - 217,112,773 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

LGALS8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	3,548,066 - 3,581,382 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	3,533,200 - 3,567,311 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	3,596,286 - 3,613,691 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	3,568,616 - 3,602,071 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	3,566,334 - 3,598,155 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	3,583,330 - 3,600,748 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	3,700,220 - 3,717,655 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	3,920,489 - 3,937,943 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lgals8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	40,192,204 - 40,209,528 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	16,357,816 - 16,374,689 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	16,357,433 - 16,374,675 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LGALS8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	54,867,021 - 54,892,049 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	54,867,014 - 54,892,188 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	58,845,312 - 58,865,899 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LGALS8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	73,661,941 - 73,682,949 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	73,661,556 - 73,687,534 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	75,752,168 - 75,773,227 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lgals8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	14,097,181 - 14,110,929 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	14,096,463 - 14,112,701 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lgals8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	26,185,383 - 26,209,949 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lgals8
127 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	159
Count of miRNA genes:	122
Interacting mature miRNAs:	136
Transcripts:	ENSRNOT00000044662
Prediction methods:	Miranda, Pita
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	49496932	65155015	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
7394837	Memor18	Memory QTL 18			exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	17	61091446	68550213	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27233445	65155015	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat

Markers in Region

D17Rat150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	58,012,452 - 58,012,678 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	66,527,909 - 66,528,134	NCBI	Rnor6.0
Rnor_5.0	17	68,273,665 - 68,273,890	UniSTS	Rnor5.0
RGSC_v3.4	17	68,573,312 - 68,573,538	RGD	RGSC3.4
RGSC_v3.4	17	68,573,313 - 68,573,538	UniSTS	RGSC3.4
Celera	17	62,520,907 - 62,521,132	UniSTS
RGSC_v3.1	17	68,584,145 - 68,584,371	RGD
RH 3.4 Map	17	604.4	UniSTS
RH 3.4 Map	17	604.4	RGD
SHRSP x BN Map	17	32.6999	UniSTS
SHRSP x BN Map	17	32.6999	RGD
Cytogenetic Map	17	q12.1	UniSTS

D17Rat148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	62,729,726 - 62,729,867 (+)	Marker Load Pipeline
mRatBN7.2	17	58,038,006 - 58,038,147 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	66,501,856 - 66,501,996	NCBI	Rnor6.0
Rnor_5.0	17	68,247,612 - 68,247,752	UniSTS	Rnor5.0
RGSC_v3.4	17	68,599,468 - 68,599,609	RGD	RGSC3.4
RGSC_v3.4	17	68,599,469 - 68,599,609	UniSTS	RGSC3.4
Celera	17	62,495,525 - 62,495,665	UniSTS
RGSC_v3.1	17	68,610,168 - 68,610,609	RGD
SHRSP x BN Map	17	32.6999	UniSTS
SHRSP x BN Map	17	32.6999	RGD
Cytogenetic Map	17	q12.1	UniSTS

RH133085

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	X	77,848,602 - 77,848,801	NCBI	Rnor5.0
Rnor_5.0	17	68,233,390 - 68,233,588	NCBI	Rnor5.0
RGSC_v3.4	17	68,613,633 - 68,613,830	UniSTS	RGSC3.4
RGSC_v3.4	X	94,781,342 - 94,781,540	UniSTS	RGSC3.4
Celera	17	62,481,316 - 62,481,513	UniSTS
Celera	X	72,954,475 - 72,954,673	UniSTS
RH 3.4 Map	17	610.79	UniSTS
Cytogenetic Map	X	q31	UniSTS
Cytogenetic Map	17	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC072488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U09824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044662 ⟹ ENSRNOP00000040412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	62,719,828 - 62,744,482 (+)	Ensembl
mRatBN7.2 Ensembl	17	58,028,107 - 58,052,552 (+)	Ensembl
Rnor_6.0 Ensembl	17	66,487,457 - 66,511,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107534 ⟹ ENSRNOP00000093738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	62,719,828 - 62,744,482 (+)	Ensembl
mRatBN7.2 Ensembl	17	58,028,105 - 58,052,764 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111447 ⟹ ENSRNOP00000092313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	62,724,348 - 62,744,482 (+)	Ensembl
mRatBN7.2 Ensembl	17	58,032,628 - 58,052,552 (+)	Ensembl

RefSeq Acc Id:

NM_053862 ⟹ NP_446314

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	62,719,853 - 62,744,272 (+)	NCBI
mRatBN7.2	17	58,028,133 - 58,052,552 (+)	NCBI
Rnor_6.0	17	66,487,451 - 66,511,870 (-)	NCBI
Rnor_5.0	17	68,232,995 - 68,261,071 (-)	NCBI
RGSC_v3.4	17	68,589,595 - 68,614,014 (+)	RGD
Celera	17	62,481,132 - 62,505,453 (-)	NCBI

Sequence:

show sequence

CACACGTCGGAGCGCAGCACCTACTACCACCTGGCTGGGGACAAGTTATTACTTTGAGTAATCC
TTAAATGAAGAGTGGGTAAAGCCCATATACGGAAGAGAGACTCCAGTCAACAATATCAATAAGT
TGAAGAAGAAAAATGTTGTCCTTAAGCAATCTACAAAATATCATCTATAACCCGACAATCCCCT
ATGTCAGTACCATTACTGAGCAGTTGAAGCCTGGCTCTTTGATCGTGATCCGTGGCCATGTTCC
TAAAGATTCAGAAAGATTCCAAGTAGACTTTCAGCATGGCAACAGCCTGAAGCCGAGAGCTGAT
GTGGCCTTCCACTTTAACCCTCGCTTCAAAAGGTCCAACTGCATTGTTTGTAACACACTGACAA
ATGAGAAATGGGGCTGGGAGGAGATCACCCACGACATGCCTTTCAGAAAAGAAAAGTCCTTTGA
GATTGTGATCATGGTGCTAAAGAACAAATTCCAGGTGGCTGTGAATGGAAAGCACATTCTGCTG
TATGCCCACAGGATCAACCCAGAGAAGATAGACACACTGGGCATCTACGGCAAAGTGAACATTC
ACTCCATCGGGTTCAGATTCAGCTCGGATTTACAGAGTATGGAAACATCTACTCTGGGACTGAC
ACAGATAAGTAAAGAAAATATACAAAAGTCTGGCAAGCTCCATTTGAGCCTGCCATTTGAAGCA
AGGTTGAATGCCTCCATGGGCCCTGGACGAACCGTTGTCGTTAAAGGAGAAGTGAATACAAATG
CCAAAAGCTTTAATGTTGACCTAGTGGCAGGAAGGTCAAGGGATATCGCTCTGCACTTGAACCC
ACGCCTGAATGTGAAAGCGTTTGTAAGAAACTCCTTTCTTCAGGATGCCTGGGGAGAAGAGGAG
AGAAACATTACCTGCTTCCCATTTAGTTCTGGGATGTACTTTGAGATGATAATTTACTGTGATG
TCCGAGAGTTCAAGGTTGCAGTAAATGGTGTGCACAGCCTGGAGTACAAGCACAGATTTAAAGA
CCTAAGCAGCATCGACACACTAGCAGTTGATGGCGATATCCGTTTGCTGGATGTAAGGAGCTGG
TAGCTATCATGACTGCCAGAACCCTGGAAATACAAAATGGCTTATCCGATACTGGCCATGTCAA
ATGCATCTCGCTTTCACCACATTGTTATACTGTTAAGTTGAGCTCGCACAACATCAAGTCCTAC
TGGTGTTGTCAGGCCTGGCCATGCAGTGTGGCTACCTCTGAATTCCCAGGAACAGATGGGGCAG
TCACAGCTCACTGCGAGCGAGGCTCTGCACACCGGGTCCCTCTTATAAAACTGCACTCAACAAA
TATCTAAGTGCCTAATATACTACATATGCTAGCTGACAGGGATGGCAAGCGTACTTCCTCTGTA
CATTCTCTGAGCTGGCCAGACATGGCAGTGCCCACAACTTGTGTGGTGCCTGTTTTCTGGCACT
CACATGTCATGCGACCAGTTTCTGATGTAGGGTCTTCCTGCTAGCATTGCATTTACCCCACTAG
GGGCCTTTGCAGTTAAGATCAGAAAAATATACTAATGGATGGAAAACACTACTTCCCCAGTAAT
CCTGTCATAATCAACATTCTATCATATCTCATAACTGAAGACTGCATAACATTTATTTAGCTCT
CACTGCTTTAAACTTTATAAAATATATGATGCTGAACACAGCAAAAAAACTGAGGCCAAAACGC
TGAATTATGACAAAACAAGTGTTCTGCTCCAGGCAGATTTCTGCTGGTTGATTGGCAGATTAAG
TCCAGGGTGTTTGTGGGTGCCTGTGGCAAAGCGCGGTAGAAGTTTATAGTTTGAAAAACCCTCT
TGGGTAACTAACATCAAGGTATACAGTGAGTATATAAAACAGGCACTGTCAGAGCAAAACCGAT
CCAGGAGGGCAGTGTGAAAAGGTTGAGCTGGTGTGGAGACCAGCCCTCGTGCCTTTGGGTCTGA
AGATGTCGGCACATCATCAGTGAGGTCAAGCACTGCTCTGCCTGCTAAGTCGACTTGTATCAGC
AGATACAGCTTCTGTACTCCTGTAACCTCCAGGATTTGACTGGAGCCCTAGGTAGTCTTTCTTC
ACTGGTTGTCACAGATGTCAAAGGTTTGGCTGTTGGGAGGGGGAAGTGTTACTTTCATCAGGTC
ATTGTATGATATTAAACCACAGGATAGCATTTTGCCAGGGTTTAGGAGTATTCAGTCAACTTGC
CCAGATACACGTATCATACATAGGAAATAACAGCATCAGCAATCTTACTTTTTAGGAAGTACTC
AAGGCAGCAACTGCTAGTCCTTCATTTTCATGCAAATTTATTATGTTTACTCTAAAAAATTCAT
ATGGGGTGGTGGATGGAACTGGGCAATTCGTAGGGAGCCCAGGAGGCTCTAGAATCCCCCAGTT
ACTTCCTTCATGCATTACTGAGATGTTGGGGGTTGAAAGGCCCTCAGTTAAAAATAAAAGCCCA
TTCATACAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254166 ⟹ XP_006254228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	62,719,808 - 62,744,272 (+)	NCBI
mRatBN7.2	17	58,028,137 - 58,052,764 (+)	NCBI
Rnor_6.0	17	66,487,451 - 66,511,949 (-)	NCBI
Rnor_5.0	17	68,232,995 - 68,261,071 (-)	NCBI

Sequence:

show sequence

TCGCACGGAAACGGCTGCAGGCTGACCCCGCCCTCGGCCTGTAGCCGCTCCGGGAACCCGGACG
GCGTCCGACAGAGGACACACGTCGGAGCGCAGCACCTACTACCACCTGGCTGGGGTGAGTCCTG
GCGACTGCGGGCTCAGGGGCATCGGGATATCACTGTTCCCGGATTGGAATCCGAAGGGAGGTTC
GAGTGTGGACACGGCGTCCCGCCGTCCCCTTCGTGACACGCGCACGGGCCACCAGACACCGGGA
GCGGTCGTGGGTTGAGGCTTGTAATCGGACCGTATTGTTGGGACAACGCTACCTGCCACGGGAC
AAGTTATTACTTTGAGTAATCCTTAAATGAAGAGTGGGTAAAGCCCATATACGGAAGAGAGACT
CCAGTCAACAATATCAATAAGTTGAAGAAGAAAAATGTTGTCCTTAAGCAATCTACAAAATATC
ATCTATAACCCGACAATCCCCTATGTCAGTACCATTACTGAGCAGTTGAAGCCTGGCTCTTTGA
TCGTGATCCGTGGCCATGTTCCTAAAGATTCAGAAAGATTCCAAGTAGACTTTCAGCATGGCAA
CAGCCTGAAGCCGAGAGCTGATGTGGCCTTCCACTTTAACCCTCGCTTCAAAAGGTCCAACTGC
ATTGTTTGTAACACACTGACAAATGAGAAATGGGGCTGGGAGGAGATCACCCACGACATGCCTT
TCAGAAAAGAAAAGTCCTTTGAGATTGTGATCATGGTGCTAAAGAACAAATTCCAGGTGGCTGT
GAATGGAAAGCACATTCTGCTGTATGCCCACAGGATCAACCCAGAGAAGATAGACACACTGGGC
ATCTACGGCAAAGTGAACATTCACTCCATCGGGTTCAGATTCAGCTCGGATTTACAGAGTATGG
AAACATCTACTCTGGGACTGACACAGATAAGTAAAGAAAATATACAAAAGTCTGGCAAGCTCCA
TTTGAGCCTGCCATTTGAAGCAAGGTTGAATGCCTCCATGGGCCCTGGACGAACCGTTGTCGTT
AAAGGAGAAGTGAATACAAATGCCAAAAGCTTTAATGTTGACCTAGTGGCAGGAAGGTCAAGGG
ATATCGCTCTGCACTTGAACCCACGCCTGAATGTGAAAGCGTTTGTAAGAAACTCCTTTCTTCA
GGATGCCTGGGGAGAAGAGGAGAGAAACATTACCTGCTTCCCATTTAGTTCTGGGATGTACTTT
GAGATGATAATTTACTGTGATGTCCGAGAGTTCAAGGTTGCAGTAAATGGTGTGCACAGCCTGG
AGTACAAGCACAGATTTAAAGACCTAAGCAGCATCGACACACTAGCAGTTGATGGCGATATCCG
TTTGCTGGATGTAAGGAGCTGGTAGCTATCATGACTGCCAGAACCCTGGAAATACAAAATGGCT
TATCCGATACTGGCCATGTCAAATGCATCTCGCTTTCACCACATTGTTATACTGTTAAGTTGAG
CTCGCACAACATCAAGTCCTACTGGTGTTGTCAGGCCTGGCCATGCAGTGTGGCTACCTCTGAA
TTCCCAGGAACAGATGGGGCAGTCACAGCTCACTGCGAGCGAGGCTCTGCACACCGGGTCCCTC
TTATAAAACTGCACTCAACAAATATCTAAGTGCCTAATATACTACATATGCTAGCTGACAGGGA
TGGCAAGCGTACTTCCTCTGTACATTCTCTGAGCTGGCCAGACATGGCAGTGCCCACAACTTGT
GTGGTGCCTGTTTTCTGGCACTCACATGTCATGCGACCAGTTTCTGATGTAGGGTCTTCCTGCT
AGCATTGCATTTACCCCACTAGGGGCCTTTGCAGTTAAGATCAGAAAAATATACTAATGGATGG
AAAACACTACTTCCCCAGTAATCCTGTCATAATCAACATTCTATCATATCTCATAACTGAAGAC
TGCATAACATTTATTTAGCTCTCACTGCTTTAAACTTTATAAAATATATGATGCTGAACACAGC
AAAAAAACTGAGGCCAAAACGCTGAATTATGACAAAACAAGTGTTCTGCTCCAGGCAGATTTCT
GCTGGTTGATTGGCAGATTAAGTCCAGGGTGTTTGTGGGTGCCTGTGGCAAAGCGCGGTAGAAG
TTTATAGTTTGAAAAACCCTCTTGGGTAACTAACATCAAGGTATACAGTGAGTATATAAAACAG
GCACTGTCAGAGCAAAACCGATCCAGGAGGGCAGTGTGAAAAGGTTGAGCTGGTGTGGAGACCA
GCCCTCGTGCCTTTGGGTCTGAAGATGTCGGCACATCATCAGTGAGGTCAAGCACTGCTCTGCC
TGCTAAGTCGACTTGTATCAGCAGATACAGCTTCTGTACTCCTGTAACCTCCAGGATTTGACTG
GAGCCCTAGGTAGTCTTTCTTCACTGGTTGTCACAGATGTCAAAGGTTTGGCTGTTGGGAGGGG
GAAGTGTTACTTTCATCAGGTCATTGTATGATATTAAACCACAGGATAGCATTTTGCCAGGGTT
TAGGAGTATTCAGTCAACTTGCCCAGATACACGTATCATACATAGGAAATAACAGCATCAGCAA
TCTTACTTTTTAGGAAGTACTCAAGGCAGCAACTGCTAGTCCTTCATTTTCATGCAAATTTATT
ATGTTTACTCTAAAAAATTCATATGGGGTGGTGGATGGAACTGGGCAATTCGTAGGGAGCCCAG
GAGGCTCTAGAATCCCCCAGTTACTTCCTTCATGCATTACTGAGATGTTGGGGGTTGAAAGGCC
CTCAGTTAAAAATAAAAGCCCATTCATACAAAA

hide sequence

RefSeq Acc Id:

XM_006254167 ⟹ XP_006254229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	62,716,368 - 62,744,272 (+)	NCBI
mRatBN7.2	17	58,024,652 - 58,052,764 (+)	NCBI
Rnor_6.0	17	66,487,451 - 66,515,316 (-)	NCBI
Rnor_5.0	17	68,232,995 - 68,261,071 (-)	NCBI

Sequence:

show sequence

AGCTTGCTTCTCTCAGATGAAACACTAAGACACGGGACATGAACCCTGTAGCACATATGAGGAC
AAGTTATTACTTTGAGTAATCCTTAAATGAAGAGTGGGTAAAGCCCATATACGGAAGAGAGACT
CCAGTCAACAATATCAATAAGTTGAAGAAGAAAAATGTTGTCCTTAAGCAATCTACAAAATATC
ATCTATAACCCGACAATCCCCTATGTCAGTACCATTACTGAGCAGTTGAAGCCTGGCTCTTTGA
TCGTGATCCGTGGCCATGTTCCTAAAGATTCAGAAAGATTCCAAGTAGACTTTCAGCATGGCAA
CAGCCTGAAGCCGAGAGCTGATGTGGCCTTCCACTTTAACCCTCGCTTCAAAAGGTCCAACTGC
ATTGTTTGTAACACACTGACAAATGAGAAATGGGGCTGGGAGGAGATCACCCACGACATGCCTT
TCAGAAAAGAAAAGTCCTTTGAGATTGTGATCATGGTGCTAAAGAACAAATTCCAGGTGGCTGT
GAATGGAAAGCACATTCTGCTGTATGCCCACAGGATCAACCCAGAGAAGATAGACACACTGGGC
ATCTACGGCAAAGTGAACATTCACTCCATCGGGTTCAGATTCAGCTCGGATTTACAGAGTATGG
AAACATCTACTCTGGGACTGACACAGATAAGTAAAGAAAATATACAAAAGTCTGGCAAGCTCCA
TTTGAGCCTGCCATTTGAAGCAAGGTTGAATGCCTCCATGGGCCCTGGACGAACCGTTGTCGTT
AAAGGAGAAGTGAATACAAATGCCAAAAGCTTTAATGTTGACCTAGTGGCAGGAAGGTCAAGGG
ATATCGCTCTGCACTTGAACCCACGCCTGAATGTGAAAGCGTTTGTAAGAAACTCCTTTCTTCA
GGATGCCTGGGGAGAAGAGGAGAGAAACATTACCTGCTTCCCATTTAGTTCTGGGATGTACTTT
GAGATGATAATTTACTGTGATGTCCGAGAGTTCAAGGTTGCAGTAAATGGTGTGCACAGCCTGG
AGTACAAGCACAGATTTAAAGACCTAAGCAGCATCGACACACTAGCAGTTGATGGCGATATCCG
TTTGCTGGATGTAAGGAGCTGGTAGCTATCATGACTGCCAGAACCCTGGAAATACAAAATGGCT
TATCCGATACTGGCCATGTCAAATGCATCTCGCTTTCACCACATTGTTATACTGTTAAGTTGAG
CTCGCACAACATCAAGTCCTACTGGTGTTGTCAGGCCTGGCCATGCAGTGTGGCTACCTCTGAA
TTCCCAGGAACAGATGGGGCAGTCACAGCTCACTGCGAGCGAGGCTCTGCACACCGGGTCCCTC
TTATAAAACTGCACTCAACAAATATCTAAGTGCCTAATATACTACATATGCTAGCTGACAGGGA
TGGCAAGCGTACTTCCTCTGTACATTCTCTGAGCTGGCCAGACATGGCAGTGCCCACAACTTGT
GTGGTGCCTGTTTTCTGGCACTCACATGTCATGCGACCAGTTTCTGATGTAGGGTCTTCCTGCT
AGCATTGCATTTACCCCACTAGGGGCCTTTGCAGTTAAGATCAGAAAAATATACTAATGGATGG
AAAACACTACTTCCCCAGTAATCCTGTCATAATCAACATTCTATCATATCTCATAACTGAAGAC
TGCATAACATTTATTTAGCTCTCACTGCTTTAAACTTTATAAAATATATGATGCTGAACACAGC
AAAAAAACTGAGGCCAAAACGCTGAATTATGACAAAACAAGTGTTCTGCTCCAGGCAGATTTCT
GCTGGTTGATTGGCAGATTAAGTCCAGGGTGTTTGTGGGTGCCTGTGGCAAAGCGCGGTAGAAG
TTTATAGTTTGAAAAACCCTCTTGGGTAACTAACATCAAGGTATACAGTGAGTATATAAAACAG
GCACTGTCAGAGCAAAACCGATCCAGGAGGGCAGTGTGAAAAGGTTGAGCTGGTGTGGAGACCA
GCCCTCGTGCCTTTGGGTCTGAAGATGTCGGCACATCATCAGTGAGGTCAAGCACTGCTCTGCC
TGCTAAGTCGACTTGTATCAGCAGATACAGCTTCTGTACTCCTGTAACCTCCAGGATTTGACTG
GAGCCCTAGGTAGTCTTTCTTCACTGGTTGTCACAGATGTCAAAGGTTTGGCTGTTGGGAGGGG
GAAGTGTTACTTTCATCAGGTCATTGTATGATATTAAACCACAGGATAGCATTTTGCCAGGGTT
TAGGAGTATTCAGTCAACTTGCCCAGATACACGTATCATACATAGGAAATAACAGCATCAGCAA
TCTTACTTTTTAGGAAGTACTCAAGGCAGCAACTGCTAGTCCTTCATTTTCATGCAAATTTATT
ATGTTTACTCTAAAAAATTCATATGGGGTGGTGGATGGAACTGGGCAATTCGTAGGGAGCCCAG
GAGGCTCTAGAATCCCCCAGTTACTTCCTTCATGCATTACTGAGATGTTGGGGGTTGAAAGGCC
CTCAGTTAAAAATAAAAGCCCATTCATACAAAA

hide sequence

RefSeq Acc Id:

XM_006254168 ⟹ XP_006254230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	62,719,808 - 62,744,272 (+)	NCBI
mRatBN7.2	17	58,028,179 - 58,052,764 (+)	NCBI
Rnor_6.0	17	66,487,451 - 66,511,637 (-)	NCBI
Rnor_5.0	17	68,232,995 - 68,261,071 (-)	NCBI

Sequence:

show sequence

CACGGGTGAGGGCTCTTCGCCGGGCGGCTCCCCTGCCGTGGAAAGGCGAGCATCACCTGGATCC
CCAAGAATGACAGGCCCGGGGACAGGACAAGTTATTACTTTGAGTAATCCTTAAATGAAGAGTG
GGTAAAGCCCATATACGGAAGAGAGACTCCAGTCAACAATATCAATAAGTTGAAGAAGAAAAAT
GTTGTCCTTAAGCAATCTACAAAATATCATCTATAACCCGACAATCCCCTATGTCAGTACCATT
ACTGAGCAGTTGAAGCCTGGCTCTTTGATCGTGATCCGTGGCCATGTTCCTAAAGATTCAGAAA
GATTCCAAGTAGACTTTCAGCATGGCAACAGCCTGAAGCCGAGAGCTGATGTGGCCTTCCACTT
TAACCCTCGCTTCAAAAGGTCCAACTGCATTGTTTGTAACACACTGACAAATGAGAAATGGGGC
TGGGAGGAGATCACCCACGACATGCCTTTCAGAAAAGAAAAGTCCTTTGAGATTGTGATCATGG
TGCTAAAGAACAAATTCCAGGTGGCTGTGAATGGAAAGCACATTCTGCTGTATGCCCACAGGAT
CAACCCAGAGAAGATAGACACACTGGGCATCTACGGCAAAGTGAACATTCACTCCATCGGGTTC
AGATTCAGCTCGGATTTACAGAGTATGGAAACATCTACTCTGGGACTGACACAGATAAGTAAAG
AAAATATACAAAAGTCTGGCAAGCTCCATTTGAGCCTGCCATTTGAAGCAAGGTTGAATGCCTC
CATGGGCCCTGGACGAACCGTTGTCGTTAAAGGAGAAGTGAATACAAATGCCAAAAGCTTTAAT
GTTGACCTAGTGGCAGGAAGGTCAAGGGATATCGCTCTGCACTTGAACCCACGCCTGAATGTGA
AAGCGTTTGTAAGAAACTCCTTTCTTCAGGATGCCTGGGGAGAAGAGGAGAGAAACATTACCTG
CTTCCCATTTAGTTCTGGGATGTACTTTGAGATGATAATTTACTGTGATGTCCGAGAGTTCAAG
GTTGCAGTAAATGGTGTGCACAGCCTGGAGTACAAGCACAGATTTAAAGACCTAAGCAGCATCG
ACACACTAGCAGTTGATGGCGATATCCGTTTGCTGGATGTAAGGAGCTGGTAGCTATCATGACT
GCCAGAACCCTGGAAATACAAAATGGCTTATCCGATACTGGCCATGTCAAATGCATCTCGCTTT
CACCACATTGTTATACTGTTAAGTTGAGCTCGCACAACATCAAGTCCTACTGGTGTTGTCAGGC
CTGGCCATGCAGTGTGGCTACCTCTGAATTCCCAGGAACAGATGGGGCAGTCACAGCTCACTGC
GAGCGAGGCTCTGCACACCGGGTCCCTCTTATAAAACTGCACTCAACAAATATCTAAGTGCCTA
ATATACTACATATGCTAGCTGACAGGGATGGCAAGCGTACTTCCTCTGTACATTCTCTGAGCTG
GCCAGACATGGCAGTGCCCACAACTTGTGTGGTGCCTGTTTTCTGGCACTCACATGTCATGCGA
CCAGTTTCTGATGTAGGGTCTTCCTGCTAGCATTGCATTTACCCCACTAGGGGCCTTTGCAGTT
AAGATCAGAAAAATATACTAATGGATGGAAAACACTACTTCCCCAGTAATCCTGTCATAATCAA
CATTCTATCATATCTCATAACTGAAGACTGCATAACATTTATTTAGCTCTCACTGCTTTAAACT
TTATAAAATATATGATGCTGAACACAGCAAAAAAACTGAGGCCAAAACGCTGAATTATGACAAA
ACAAGTGTTCTGCTCCAGGCAGATTTCTGCTGGTTGATTGGCAGATTAAGTCCAGGGTGTTTGT
GGGTGCCTGTGGCAAAGCGCGGTAGAAGTTTATAGTTTGAAAAACCCTCTTGGGTAACTAACAT
CAAGGTATACAGTGAGTATATAAAACAGGCACTGTCAGAGCAAAACCGATCCAGGAGGGCAGTG
TGAAAAGGTTGAGCTGGTGTGGAGACCAGCCCTCGTGCCTTTGGGTCTGAAGATGTCGGCACAT
CATCAGTGAGGTCAAGCACTGCTCTGCCTGCTAAGTCGACTTGTATCAGCAGATACAGCTTCTG
TACTCCTGTAACCTCCAGGATTTGACTGGAGCCCTAGGTAGTCTTTCTTCACTGGTTGTCACAG
ATGTCAAAGGTTTGGCTGTTGGGAGGGGGAAGTGTTACTTTCATCAGGTCATTGTATGATATTA
AACCACAGGATAGCATTTTGCCAGGGTTTAGGAGTATTCAGTCAACTTGCCCAGATACACGTAT
CATACATAGGAAATAACAGCATCAGCAATCTTACTTTTTAGGAAGTACTCAAGGCAGCAACTGC
TAGTCCTTCATTTTCATGCAAATTTATTATGTTTACTCTAAAAAATTCATATGGGGTGGTGGAT
GGAACTGGGCAATTCGTAGGGAGCCCAGGAGGCTCTAGAATCCCCCAGTTACTTCCTTCATGCA
TTACTGAGATGTTGGGGGTTGAAAGGCCCTCAGTTAAAAATAAAAGCCCATTCATACAAAA

hide sequence

RefSeq Acc Id:

XM_017600439 ⟹ XP_017455928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	62,718,585 - 62,744,272 (+)	NCBI
mRatBN7.2	17	58,028,016 - 58,052,764 (+)	NCBI
Rnor_6.0	17	66,487,451 - 66,511,950 (-)	NCBI

Sequence:

show sequence

TTCGCACGGAAACGGCTGCAGGCTGACCCCGCCCTCGGCCTGTAGCCGCTCCGGGAACCCGGAC
GGCGTCCGACAGAGGACACACGTCGGAGCGCAGCACCTACTACCACCTGGCTGGGGACAAGTTA
TTACTTTGAGTAATCCTTAAATGAAGAGTGGGTAAAGCCCATATACGGAAGAGAGACTCCAGTC
AACAATATCAATAAGTTGAAGAAGAAAAATGTTGTCCTTAAGCAATCTACAAAATATCATCTAT
AACCCGACAATCCCCTATGTCAGTACCATTACTGAGCAGTTGAAGCCTGGCTCTTTGATCGTGA
TCCGTGGCCATGTTCCTAAAGATTCAGAAAGATTCCAAGTAGACTTTCAGCATGGCAACAGCCT
GAAGCCGAGAGCTGATGTGGCCTTCCACTTTAACCCTCGCTTCAAAAGGTCCAACTGCATTGTT
TGTAACACACTGACAAATGAGAAATGGGGCTGGGAGGAGATCACCCACGACATGCCTTTCAGAA
AAGAAAAGTCCTTTGAGATTGTGATCATGGTGCTAAAGAACAAATTCCAGGTGGCTGTGAATGG
AAAGCACATTCTGCTGTATGCCCACAGGATCAACCCAGAGAAGATAGACACACTGGGCATCTAC
GGCAAAGTGAACATTCACTCCATCGGGTTCAGATTCAGCTCGGATTTACAGAGTATGGAAACAT
CTACTCTGGGACTGACACAGCAGATACAAAAGTCTGGCAAGCTCCATTTGAGCCTGCCATTTGA
AGCAAGGTTGAATGCCTCCATGGGCCCTGGACGAACCGTTGTCGTTAAAGGAGAAGTGAATACA
AATGCCAAAAGCTTTAATGTTGACCTAGTGGCAGGAAGGTCAAGGGATATCGCTCTGCACTTGA
ACCCACGCCTGAATGTGAAAGCGTTTGTAAGAAACTCCTTTCTTCAGGATGCCTGGGGAGAAGA
GGAGAGAAACATTACCTGCTTCCCATTTAGTTCTGGGATGTACTTTGAGATGATAATTTACTGT
GATGTCCGAGAGTTCAAGGTTGCAGTAAATGGTGTGCACAGCCTGGAGTACAAGCACAGATTTA
AAGACCTAAGCAGCATCGACACACTAGCAGTTGATGGCGATATCCGTTTGCTGGATGTAAGGAG
CTGGTAGCTATCATGACTGCCAGAACCCTGGAAATACAAAATGGCTTATCCGATACTGGCCATG
TCAAATGCATCTCGCTTTCACCACATTGTTATACTGTTAAGTTGAGCTCGCACAACATCAAGTC
CTACTGGTGTTGTCAGGCCTGGCCATGCAGTGTGGCTACCTCTGAATTCCCAGGAACAGATGGG
GCAGTCACAGCTCACTGCGAGCGAGGCTCTGCACACCGGGTCCCTCTTATAAAACTGCACTCAA
CAAATATCTAAGTGCCTAATATACTACATATGCTAGCTGACAGGGATGGCAAGCGTACTTCCTC
TGTACATTCTCTGAGCTGGCCAGACATGGCAGTGCCCACAACTTGTGTGGTGCCTGTTTTCTGG
CACTCACATGTCATGCGACCAGTTTCTGATGTAGGGTCTTCCTGCTAGCATTGCATTTACCCCA
CTAGGGGCCTTTGCAGTTAAGATCAGAAAAATATACTAATGGATGGAAAACACTACTTCCCCAG
TAATCCTGTCATAATCAACATTCTATCATATCTCATAACTGAAGACTGCATAACATTTATTTAG
CTCTCACTGCTTTAAACTTTATAAAATATATGATGCTGAACACAGCAAAAAAACTGAGGCCAAA
ACGCTGAATTATGACAAAACAAGTGTTCTGCTCCAGGCAGATTTCTGCTGGTTGATTGGCAGAT
TAAGTCCAGGGTGTTTGTGGGTGCCTGTGGCAAAGCGCGGTAGAAGTTTATAGTTTGAAAAACC
CTCTTGGGTAACTAACATCAAGGTATACAGTGAGTATATAAAACAGGCACTGTCAGAGCAAAAC
CGATCCAGGAGGGCAGTGTGAAAAGGTTGAGCTGGTGTGGAGACCAGCCCTCGTGCCTTTGGGT
CTGAAGATGTCGGCACATCATCAGTGAGGTCAAGCACTGCTCTGCCTGCTAAGTCGACTTGTAT
CAGCAGATACAGCTTCTGTACTCCTGTAACCTCCAGGATTTGACTGGAGCCCTAGGTAGTCTTT
CTTCACTGGTTGTCACAGATGTCAAAGGTTTGGCTGTTGGGAGGGGGAAGTGTTACTTTCATCA
GGTCATTGTATGATATTAAACCACAGGATAGCATTTTGCCAGGGTTTAGGAGTATTCAGTCAAC
TTGCCCAGATACACGTATCATACATAGGAAATAACAGCATCAGCAATCTTACTTTTTAGGAAGT
ACTCAAGGCAGCAACTGCTAGTCCTTCATTTTCATGCAAATTTATTATGTTTACTCTAAAAAAT
TCATATGGGGTGGTGGATGGAACTGGGCAATTCGTAGGGAGCCCAGGAGGCTCTAGAATCCCCC
AGTTACTTCCTTCATGCATTACTGAGATGTTGGGGGTTGAAAGGCCCTCAGTTAAAAATAAAAG
CCCATTCATACAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_446314	(Get FASTA)	NCBI Sequence Viewer
	XP_006254228	(Get FASTA)	NCBI Sequence Viewer
	XP_006254229	(Get FASTA)	NCBI Sequence Viewer
	XP_006254230	(Get FASTA)	NCBI Sequence Viewer
	XP_017455928	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA66359	(Get FASTA)	NCBI Sequence Viewer
	AAH72488	(Get FASTA)	NCBI Sequence Viewer
	EDM06985	(Get FASTA)	NCBI Sequence Viewer
	EDM06986	(Get FASTA)	NCBI Sequence Viewer
	EDM06987	(Get FASTA)	NCBI Sequence Viewer
	EDM06988	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040412
	ENSRNOP00000092313
GenBank Protein	Q62665	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446314 ⟸ NM_053862

- UniProtKB:

Q62665 (UniProtKB/Swiss-Prot), Q6IN24 (UniProtKB/TrEMBL), F1M9Q4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSLSNLQNIIYNPTIPYVSTITEQLKPGSLIVIRGHVPKDSERFQVDFQHGNSLKPRADVAFH
FNPRFKRSNCIVCNTLTNEKWGWEEITHDMPFRKEKSFEIVIMVLKNKFQVAVNGKHILLYAHR
INPEKIDTLGIYGKVNIHSIGFRFSSDLQSMETSTLGLTQISKENIQKSGKLHLSLPFEARLNA
SMGPGRTVVVKGEVNTNAKSFNVDLVAGRSRDIALHLNPRLNVKAFVRNSFLQDAWGEEERNIT
CFPFSSGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKDLSSIDTLAVDGDIRLLDVRSW

hide sequence

RefSeq Acc Id:	XP_006254229 ⟸ XM_006254167
- Peptide Label:	isoform X1
- UniProtKB:	Q62665 (UniProtKB/Swiss-Prot), Q6IN24 (UniProtKB/TrEMBL), F1M9Q4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSLSNLQNIIYNPTIPYVSTITEQLKPGSLIVIRGHVPKDSERFQVDFQHGNSLKPRADVAFH FNPRFKRSNCIVCNTLTNEKWGWEEITHDMPFRKEKSFEIVIMVLKNKFQVAVNGKHILLYAHR INPEKIDTLGIYGKVNIHSIGFRFSSDLQSMETSTLGLTQISKENIQKSGKLHLSLPFEARLNA SMGPGRTVVVKGEVNTNAKSFNVDLVAGRSRDIALHLNPRLNVKAFVRNSFLQDAWGEEERNIT CFPFSSGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKDLSSIDTLAVDGDIRLLDVRSW hide sequence

RefSeq Acc Id:	XP_006254228 ⟸ XM_006254166
- Peptide Label:	isoform X1
- UniProtKB:	Q62665 (UniProtKB/Swiss-Prot), Q6IN24 (UniProtKB/TrEMBL), F1M9Q4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSLSNLQNIIYNPTIPYVSTITEQLKPGSLIVIRGHVPKDSERFQVDFQHGNSLKPRADVAFH FNPRFKRSNCIVCNTLTNEKWGWEEITHDMPFRKEKSFEIVIMVLKNKFQVAVNGKHILLYAHR INPEKIDTLGIYGKVNIHSIGFRFSSDLQSMETSTLGLTQISKENIQKSGKLHLSLPFEARLNA SMGPGRTVVVKGEVNTNAKSFNVDLVAGRSRDIALHLNPRLNVKAFVRNSFLQDAWGEEERNIT CFPFSSGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKDLSSIDTLAVDGDIRLLDVRSW hide sequence

RefSeq Acc Id:	XP_006254230 ⟸ XM_006254168
- Peptide Label:	isoform X1
- UniProtKB:	Q62665 (UniProtKB/Swiss-Prot), Q6IN24 (UniProtKB/TrEMBL), F1M9Q4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSLSNLQNIIYNPTIPYVSTITEQLKPGSLIVIRGHVPKDSERFQVDFQHGNSLKPRADVAFH FNPRFKRSNCIVCNTLTNEKWGWEEITHDMPFRKEKSFEIVIMVLKNKFQVAVNGKHILLYAHR INPEKIDTLGIYGKVNIHSIGFRFSSDLQSMETSTLGLTQISKENIQKSGKLHLSLPFEARLNA SMGPGRTVVVKGEVNTNAKSFNVDLVAGRSRDIALHLNPRLNVKAFVRNSFLQDAWGEEERNIT CFPFSSGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKDLSSIDTLAVDGDIRLLDVRSW hide sequence

RefSeq Acc Id:	XP_017455928 ⟸ XM_017600439
- Peptide Label:	isoform X2
- UniProtKB:	Q62665 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLSLSNLQNIIYNPTIPYVSTITEQLKPGSLIVIRGHVPKDSERFQVDFQHGNSLKPRADVAFH FNPRFKRSNCIVCNTLTNEKWGWEEITHDMPFRKEKSFEIVIMVLKNKFQVAVNGKHILLYAHR INPEKIDTLGIYGKVNIHSIGFRFSSDLQSMETSTLGLTQQIQKSGKLHLSLPFEARLNASMGP GRTVVVKGEVNTNAKSFNVDLVAGRSRDIALHLNPRLNVKAFVRNSFLQDAWGEEERNITCFPF SSGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKDLSSIDTLAVDGDIRLLDVRSW hide sequence

Ensembl Acc Id:

ENSRNOP00000040412 ⟸ ENSRNOT00000044662

Ensembl Acc Id:

ENSRNOP00000092313 ⟸ ENSRNOT00000111447

Ensembl Acc Id:

ENSRNOP00000093738 ⟸ ENSRNOT00000107534

Protein Domains

Galectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62665-F1-model_v2	AlphaFold	Q62665	1-316	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700538

Promoter ID:

EPDNEW_R11062

Type:

initiation region

Name:

Lgals8_1

Description:

galectin 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	66,511,869 - 66,511,929	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621272	AgrOrtholog
BioCyc Gene	G2FUF-8939	BioCyc
Ensembl Genes	ENSRNOG00000018046	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000044662	ENTREZGENE
	ENSRNOT00000111447	ENTREZGENE
Gene3D-CATH	2.60.120.200	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7104910	IMAGE-MGC_LOAD
InterPro	ConA-like_dom_sf	UniProtKB/Swiss-Prot
	Galectin-like	UniProtKB/Swiss-Prot
	Galectin_CRD	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91554	IMAGE-MGC_LOAD
NCBI Gene	116641	ENTREZGENE
PANTHER	GALECTIN-8	UniProtKB/Swiss-Prot
	PTHR11346	UniProtKB/Swiss-Prot
Pfam	Gal-bind_lectin	UniProtKB/Swiss-Prot
PhenoGen	Lgals8	PhenoGen
PROSITE	GALECTIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000018046	RatGTEx
SMART	Gal-bind_lectin	UniProtKB/Swiss-Prot
	GLECT	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49899	UniProtKB/Swiss-Prot
UniProt	A0A8I6AHL3_RAT	UniProtKB/TrEMBL
	A0A8I6AMD3_RAT	UniProtKB/TrEMBL
	A6KN35_RAT	UniProtKB/TrEMBL
	F1M9Q4	ENTREZGENE
	LEG8_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6IN24	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Lgals8	galectin 8	Lgals8	lectin, galactoside-binding, soluble, 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-30	Lgals8	lectin, galactoside-binding, soluble, 8	Lgals8	lectin, galactose binding, soluble 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-19	Lgals8	lectin, galactose binding, soluble 8	Lgals8	lectin, galactoside-binding, soluble 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Lgals8	lectin, galactoside-binding, soluble 8		lectin, galactose binding, soluble 8	Name updated	1299863	APPROVED
2005-01-20	Lgals8	lectin, galactose binding, soluble 8			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Lgals8	lectin, galactose binding, soluble 8			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in liver, kidney, cardiac muscle, lung, and brain	729012

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message