Eef1d (eukaryotic translation elongation factor 1 delta) - Rat Genome Database

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Gene: Eef1d (eukaryotic translation elongation factor 1 delta) Rattus norvegicus
Analyze
Symbol: Eef1d (Ensembl: Pycr3)
Name: eukaryotic translation elongation factor 1 delta (Ensembl:pyrroline-5-carboxylate reductase 3)
RGD ID: 621174
Description: Predicted to enable several functions, including RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; guanyl-nucleotide exchange factor activity; and heat shock protein binding activity. Predicted to be involved in several processes, including cellular response to ionizing radiation; positive regulation of transcription by RNA polymerase II; and translational elongation. Predicted to be located in cytoplasm; fibrillar center; and nucleoplasm. Predicted to be part of eukaryotic translation elongation factor 1 complex. Predicted to be active in cytosol and glutamatergic synapse. Predicted to colocalize with endoplasmic reticulum. Orthologous to human EEF1D (eukaryotic translation elongation factor 1 delta); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EF-1-delta; elongation factor 1-delta; eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein); guanine nucleotide exchange protein; LOC300033; translation elongation factor 1-delta subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,462,645 - 109,478,021 (-)NCBIGRCr8
mRatBN7.27107,581,930 - 107,596,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,581,930 - 107,608,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,321,443 - 109,329,841 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,545,121 - 111,553,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,491,044 - 111,499,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,928,264 - 116,942,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,928,265 - 116,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,820,231 - 116,835,552 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,870,558 - 113,879,376 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,904,788 - 113,913,606 (-)NCBI
Celera7103,938,928 - 103,947,339 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
D-glucitol  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
hydralazine  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(II) chloride  (ISO)
methidathion  (ISO)
microcystin-LR  (ISO)
N-nitrosomorpholine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
Propiverine  (EXP)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
Soman  (EXP)
succimer  (ISO)
T-2 toxin  (EXP)
thapsigargin  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Oncogenic potential of mouse translation elongation factor-1 delta, a novel cadmium-responsive proto-oncogene. Joseph P, etal., J Biol Chem 2002 Feb 22;277(8):6131-6.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8168075   PMID:8743958   PMID:12477932   PMID:12761501   PMID:18056256   PMID:21597468   PMID:21630459   PMID:23106098   PMID:24625528   PMID:25468996   PMID:30053369   PMID:35352799  


Genomics

Comparative Map Data
Eef1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,462,645 - 109,478,021 (-)NCBIGRCr8
mRatBN7.27107,581,930 - 107,596,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,581,930 - 107,608,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,321,443 - 109,329,841 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,545,121 - 111,553,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,491,044 - 111,499,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,928,264 - 116,942,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,928,265 - 116,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,820,231 - 116,835,552 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,870,558 - 113,879,376 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,904,788 - 113,913,606 (-)NCBI
Celera7103,938,928 - 103,947,339 (-)NCBICelera
Cytogenetic Map7q34NCBI
EEF1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,579,728 - 143,597,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,579,697 - 143,599,541 (-)EnsemblGRCh38hg38GRCh38
GRCh378144,661,898 - 144,679,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,733,041 - 144,750,726 (-)NCBINCBI36Build 36hg18NCBI36
Build 348144,733,040 - 144,750,726NCBI
Celera8140,972,129 - 140,990,084 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,913,388 - 139,931,374 (-)NCBIHuRef
CHM1_18144,702,015 - 144,719,993 (-)NCBICHM1_1
T2T-CHM13v2.08144,729,124 - 144,746,827 (-)NCBIT2T-CHM13v2.0
Eef1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,766,643 - 75,781,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,766,054 - 75,781,405 (-)EnsemblGRCm39 Ensembl
GRCm381575,894,796 - 75,909,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,894,205 - 75,909,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv371575,725,230 - 75,739,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,722,055 - 75,736,595 (-)NCBIMGSCv36mm8
Celera1577,395,780 - 77,410,351 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.05NCBI
Eef1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554542,284,892 - 2,299,169 (-)NCBIChiLan1.0ChiLan1.0
EEF1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,063,180 - 161,081,090 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,580,866 - 136,598,651 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,333,100 - 140,350,955 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,348,045 - 143,365,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,340,928 - 143,362,971 (-)Ensemblpanpan1.1panPan2
EEF1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,240,405 - 37,247,603 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,239,150 - 37,255,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,196,984 - 37,210,347 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,712,322 - 37,725,681 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,711,489 - 37,726,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,386,658 - 37,399,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,503,589 - 37,516,922 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,984,799 - 37,998,156 (-)NCBIUU_Cfam_GSD_1.0
Eef1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,112,915 - 1,127,546 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,538,821 - 8,553,970 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,538,899 - 8,553,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EEF1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4969,527 - 983,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14969,532 - 982,250 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.241,038,509 - 1,047,368 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EEF1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,800,115 - 137,818,264 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,799,428 - 137,813,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,075,527 - 2,093,549 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eef1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,154,327 - 13,173,477 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,148,640 - 13,165,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eef1d
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:92
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000011260, ENSRNOT00000029456
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat

Markers in Region
RH129024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,581,944 - 107,582,232 (+)MAPPERmRatBN7.2
Rnor_6.07116,928,279 - 116,928,566NCBIRnor6.0
Rnor_5.07116,820,246 - 116,821,137UniSTSRnor5.0
Rnor_5.07116,820,246 - 116,820,533UniSTSRnor5.0
RGSC_v3.47113,870,573 - 113,870,860UniSTSRGSC3.4
Celera7103,938,943 - 103,939,230UniSTS
RH 3.4 Map7781.2UniSTS
Cytogenetic Map7q34UniSTS
BF412712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27107,589,828 - 107,590,017 (+)MAPPERmRatBN7.2
Rnor_6.07116,936,163 - 116,936,351NCBIRnor6.0
Rnor_5.07116,828,734 - 116,828,922UniSTSRnor5.0
RGSC_v3.47113,878,865 - 113,879,053UniSTSRGSC3.4
Celera7103,946,828 - 103,947,016UniSTS
RH 3.4 Map7785.5UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2
Medium 3 43 57 41 19 41 8 11 74 35 39 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF145050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000029456   ⟹   ENSRNOP00000034828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,930 - 107,591,888 (-)Ensembl
Rnor_6.0 Ensembl7116,928,265 - 116,936,674 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087328   ⟹   ENSRNOP00000071183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,603,549 - 107,608,789 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094330   ⟹   ENSRNOP00000097149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,930 - 107,587,769 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098616   ⟹   ENSRNOP00000087171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,931 - 107,596,628 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106771   ⟹   ENSRNOP00000092090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,933 - 107,596,394 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110570   ⟹   ENSRNOP00000096307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,930 - 107,596,626 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111979   ⟹   ENSRNOP00000081329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,930 - 107,596,405 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112184   ⟹   ENSRNOP00000076544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,930 - 107,608,799 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117537   ⟹   ENSRNOP00000084037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7107,581,931 - 107,591,888 (-)Ensembl
RefSeq Acc Id: NM_001013104   ⟹   NP_001013122
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,471,055 (-)NCBI
mRatBN7.27107,581,930 - 107,590,340 (-)NCBI
Rnor_6.07116,928,264 - 116,936,674 (-)NCBI
Rnor_5.07116,820,231 - 116,835,552 (-)NCBI
RGSC_v3.47113,870,558 - 113,879,376 (-)RGD
Celera7103,938,928 - 103,947,339 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765551   ⟹   XP_008763773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,124 (-)NCBI
mRatBN7.27107,581,930 - 107,596,428 (-)NCBI
Rnor_6.07116,928,264 - 116,942,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765557   ⟹   XP_008763779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,140 (-)NCBI
mRatBN7.27107,581,930 - 107,596,452 (-)NCBI
Rnor_6.07116,928,264 - 116,942,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765559   ⟹   XP_008763781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,138 (-)NCBI
mRatBN7.27107,581,930 - 107,596,415 (-)NCBI
Rnor_6.07116,928,264 - 116,942,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765561   ⟹   XP_008763783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,140 (-)NCBI
mRatBN7.27107,581,930 - 107,596,452 (-)NCBI
Rnor_6.07116,928,264 - 116,942,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594765   ⟹   XP_017450254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,143 (-)NCBI
mRatBN7.27107,581,930 - 107,596,452 (-)NCBI
Rnor_6.07116,928,264 - 116,942,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594767   ⟹   XP_017450256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,120 (-)NCBI
mRatBN7.27107,581,930 - 107,596,414 (-)NCBI
Rnor_6.07116,928,264 - 116,942,743 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078811   ⟹   XP_038934739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,136 (-)NCBI
mRatBN7.27107,581,930 - 107,596,411 (-)NCBI
RefSeq Acc Id: XM_039078812   ⟹   XP_038934740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,113 (-)NCBI
mRatBN7.27107,581,930 - 107,596,411 (-)NCBI
RefSeq Acc Id: XM_039078813   ⟹   XP_038934741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,116 (-)NCBI
mRatBN7.27107,581,930 - 107,596,411 (-)NCBI
RefSeq Acc Id: XM_039078814   ⟹   XP_038934742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,114 (-)NCBI
mRatBN7.27107,581,930 - 107,596,428 (-)NCBI
RefSeq Acc Id: XM_039078815   ⟹   XP_038934743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,142 (-)NCBI
mRatBN7.27107,581,930 - 107,596,452 (-)NCBI
RefSeq Acc Id: XM_039078818   ⟹   XP_038934746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,116 (-)NCBI
mRatBN7.27107,581,930 - 107,596,414 (-)NCBI
RefSeq Acc Id: XM_063263280   ⟹   XP_063119350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,547 (-)NCBI
RefSeq Acc Id: XM_063263281   ⟹   XP_063119351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263282   ⟹   XP_063119352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,122 (-)NCBI
RefSeq Acc Id: XM_063263283   ⟹   XP_063119353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,122 (-)NCBI
RefSeq Acc Id: XM_063263284   ⟹   XP_063119354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,547 (-)NCBI
RefSeq Acc Id: XM_063263285   ⟹   XP_063119355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,119 (-)NCBI
RefSeq Acc Id: XM_063263286   ⟹   XP_063119356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263287   ⟹   XP_063119357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,119 (-)NCBI
RefSeq Acc Id: XM_063263288   ⟹   XP_063119358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,122 (-)NCBI
RefSeq Acc Id: XM_063263290   ⟹   XP_063119360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,121 (-)NCBI
RefSeq Acc Id: XM_063263291   ⟹   XP_063119361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263292   ⟹   XP_063119362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,547 (-)NCBI
RefSeq Acc Id: XM_063263293   ⟹   XP_063119363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263294   ⟹   XP_063119364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263295   ⟹   XP_063119365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263296   ⟹   XP_063119366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,327 (-)NCBI
RefSeq Acc Id: XM_063263298   ⟹   XP_063119368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,608 (-)NCBI
RefSeq Acc Id: XM_063263299   ⟹   XP_063119369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,472,547 (-)NCBI
RefSeq Acc Id: XM_063263300   ⟹   XP_063119370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,147 (-)NCBI
RefSeq Acc Id: XM_063263301   ⟹   XP_063119371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,125 (-)NCBI
RefSeq Acc Id: XM_063263302   ⟹   XP_063119372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,389 (-)NCBI
RefSeq Acc Id: XM_063263303   ⟹   XP_063119373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,477,324 (-)NCBI
RefSeq Acc Id: XM_063263305   ⟹   XP_063119375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87109,462,645 - 109,478,021 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001013122 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763773 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763779 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763781 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763783 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450254 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450256 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934746 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119350 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119351 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119352 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119353 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119354 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119355 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119356 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119357 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119358 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119360 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119361 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119362 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119363 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119364 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119365 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119366 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119368 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119369 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119370 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119371 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119372 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119373 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119375 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD33950 (Get FASTA)   NCBI Sequence Viewer  
  AAH79391 (Get FASTA)   NCBI Sequence Viewer  
  EDM16037 (Get FASTA)   NCBI Sequence Viewer  
  EDM16038 (Get FASTA)   NCBI Sequence Viewer  
  EDM16039 (Get FASTA)   NCBI Sequence Viewer  
  EDM16040 (Get FASTA)   NCBI Sequence Viewer  
  EDM16041 (Get FASTA)   NCBI Sequence Viewer  
  EDM16042 (Get FASTA)   NCBI Sequence Viewer  
  EDM16043 (Get FASTA)   NCBI Sequence Viewer  
  EDM16044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034828
  ENSRNOP00000034828.5
  ENSRNOP00000076544.1
  ENSRNOP00000081329.1
  ENSRNOP00000084037.1
  ENSRNOP00000087171.1
  ENSRNOP00000092090
  ENSRNOP00000092090.1
  ENSRNOP00000096307.1
  ENSRNOP00000097149.1
GenBank Protein Q68FR9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013122   ⟸   NM_001013104
- UniProtKB: A0A8L2QI22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763783   ⟸   XM_008765561
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AQM3 (UniProtKB/TrEMBL),   A0A8I6GFR4 (UniProtKB/TrEMBL),   A6HS29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763779   ⟸   XM_008765557
- Peptide Label: isoform X15
- UniProtKB: Q68FR9 (UniProtKB/Swiss-Prot),   A0A8I6GFR4 (UniProtKB/TrEMBL),   A6HS33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763773   ⟸   XM_008765551
- Peptide Label: isoform X7
- UniProtKB: A0A8L2QI22 (UniProtKB/TrEMBL),   A0A8I5ZWY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763781   ⟸   XM_008765559
- Peptide Label: isoform X15
- UniProtKB: Q68FR9 (UniProtKB/Swiss-Prot),   A0A8I6GFR4 (UniProtKB/TrEMBL),   A6HS33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450254   ⟸   XM_017594765
- Peptide Label: isoform X14
- UniProtKB: A0A8I6GFR4 (UniProtKB/TrEMBL),   A0A8I6GJH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450256   ⟸   XM_017594767
- Peptide Label: isoform X14
- UniProtKB: A0A8I6GFR4 (UniProtKB/TrEMBL),   A0A8I6GJH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000034828   ⟸   ENSRNOT00000029456
RefSeq Acc Id: XP_038934743   ⟸   XM_039078815
- Peptide Label: isoform X16
- UniProtKB: A0A8I5ZUU1 (UniProtKB/TrEMBL),   A0A8I6GFR4 (UniProtKB/TrEMBL),   A6HS30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934742   ⟸   XM_039078814
- Peptide Label: isoform X12
- UniProtKB: A0A8L2QI22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934746   ⟸   XM_039078818
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AQM3 (UniProtKB/TrEMBL),   A0A8I6GFR4 (UniProtKB/TrEMBL),   A6HS29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934740   ⟸   XM_039078812
- Peptide Label: isoform X10
- UniProtKB: A0A8L2QI22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934741   ⟸   XM_039078813
- Peptide Label: isoform X11
- UniProtKB: A0A8L2QI22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934739   ⟸   XM_039078811
- Peptide Label: isoform X9
- UniProtKB: A0A8L2QI22 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000071183   ⟸   ENSRNOT00000087328
RefSeq Acc Id: ENSRNOP00000081329   ⟸   ENSRNOT00000111979
RefSeq Acc Id: ENSRNOP00000076544   ⟸   ENSRNOT00000112184
RefSeq Acc Id: ENSRNOP00000084037   ⟸   ENSRNOT00000117537
RefSeq Acc Id: ENSRNOP00000087171   ⟸   ENSRNOT00000098616
RefSeq Acc Id: ENSRNOP00000096307   ⟸   ENSRNOT00000110570
RefSeq Acc Id: ENSRNOP00000092090   ⟸   ENSRNOT00000106771
RefSeq Acc Id: ENSRNOP00000097149   ⟸   ENSRNOT00000094330
RefSeq Acc Id: XP_063119375   ⟸   XM_063263305
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119372   ⟸   XM_063263302
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119366   ⟸   XM_063263296
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119373   ⟸   XM_063263303
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119370   ⟸   XM_063263300
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119371   ⟸   XM_063263301
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119353   ⟸   XM_063263283
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119358   ⟸   XM_063263288
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119352   ⟸   XM_063263282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119360   ⟸   XM_063263290
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063119357   ⟸   XM_063263287
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119355   ⟸   XM_063263285
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119368   ⟸   XM_063263298
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063119363   ⟸   XM_063263293
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063119364   ⟸   XM_063263294
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119356   ⟸   XM_063263286
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119361   ⟸   XM_063263291
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119351   ⟸   XM_063263281
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119365   ⟸   XM_063263295
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119369   ⟸   XM_063263299
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063119354   ⟸   XM_063263284
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119362   ⟸   XM_063263292
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063119350   ⟸   XM_063263280
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FR9-F1-model_v2 AlphaFold Q68FR9 1-281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695396
Promoter ID:EPDNEW_R5918
Type:single initiation site
Name:Eef1d_1
Description:eukaryotic translation elongation factor 1 delta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07116,936,686 - 116,936,746EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621174 AgrOrtholog
BioCyc Gene G2FUF-32976 BioCyc
Ensembl Genes ENSRNOG00000021638 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029456.6 UniProtKB/TrEMBL
  ENSRNOT00000094330.1 UniProtKB/TrEMBL
  ENSRNOT00000098616.1 UniProtKB/TrEMBL
  ENSRNOT00000106771.1 UniProtKB/TrEMBL
  ENSRNOT00000110570.1 UniProtKB/TrEMBL
  ENSRNOT00000111979.1 UniProtKB/TrEMBL
  ENSRNOT00000112184.1 UniProtKB/TrEMBL
  ENSRNOT00000117537.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  ProC C-terminal domain-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7111852 IMAGE-MGC_LOAD
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  eEF-1beta-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-1_beta_acid_region_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF1B_bsu/dsu_GNE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  P5C_Rdtase_cat_N UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
  Pyrroline-COOH_reductase UniProtKB/TrEMBL
  Transl_elong_EF1B/ribosomal_S6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EF1B_B/D_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:300033 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94908 IMAGE-MGC_LOAD
NCBI Gene Eef1d ENTREZGENE
PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELONGATION FACTOR 1-DELTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PYRROLINE-5-CARBOXYLATE REDUCTASE UniProtKB/TrEMBL
  PYRROLINE-5-CARBOXYLATE REDUCTASE 3 UniProtKB/TrEMBL
Pfam EF-1_beta_acid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF1_GNE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F420_oxidored UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
PhenoGen Eef1d PhenoGen
PROSITE EF1BD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021638 RatGTEx
SMART EF-1_beta_acid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF1_GNE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
  SSF54984 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y6S6_RAT UniProtKB/TrEMBL
  A0A8I5ZUU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AQM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARB5_RAT UniProtKB/TrEMBL
  A0A8I6GFR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QI22 ENTREZGENE, UniProtKB/TrEMBL
  A6HS28_RAT UniProtKB/TrEMBL
  A6HS29 ENTREZGENE, UniProtKB/TrEMBL
  A6HS30 ENTREZGENE, UniProtKB/TrEMBL
  A6HS31_RAT UniProtKB/TrEMBL
  A6HS33 ENTREZGENE, UniProtKB/TrEMBL
  A6HS34_RAT UniProtKB/TrEMBL
  A6HS35_RAT UniProtKB/TrEMBL
  EF1D_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Eef1d  eukaryotic translation elongation factor 1 delta  Eef1d  eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-04-14 Eef1d  eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)  Eef1d_predicted  eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) (predicted)  Data merged from RGD:1311814 737654 APPROVED
2005-01-20 Eef1d  eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)    translation elongation factor 1-delta subunit  Name updated 1299863 APPROVED
2005-01-12 Eef1d_predicted  eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Eef1d  translation elongation factor 1-delta subunit      Symbol and Name status set to provisional 70820 PROVISIONAL