Rpl36al1 (ribosomal protein L36A like 1) - Rat Genome Database

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Pathways
Gene: Rpl36al1 (ribosomal protein L36A like 1) Rattus norvegicus
Analyze
Symbol: Rpl36al1
Name: ribosomal protein L36A like 1
RGD ID: 621156
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within response to retinoic acid. Predicted to be located in nucleus. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL36A (ribosomal protein L36a); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L36a; 60S ribosomal protein L44; large ribosomal subunit protein eL42; large subunit ribosomal protein L36a; ribosomal protein L36A-like; Rpl36a; Rpl36al
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,390,864 - 93,392,258 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl693,390,866 - 93,391,296 (-)EnsemblGRCr8
GRCr8 Ensembl2022,034,086 - 22,034,406 (-)EnsemblGRCr8
mRatBN7.2687,654,808 - 87,656,202 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2022,035,300 - 22,035,620 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1055,343,508 - 55,343,828 (+)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX97,766,179 - 97,768,892 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx688,054,689 - 88,056,086 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,354,124 - 88,355,521 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,793,875 - 87,795,272 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,504,178 - 1,505,581 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,251,253 - 57,251,573 (+)Ensemblrn6Rnor6.0
Rnor_6.0 EnsemblX105,402,867 - 105,405,580 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl181,504,178 - 1,505,570 (+)Ensemblrn6Rnor6.0
Rnor_5.06100,934,129 - 100,935,447 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4691,135,710 - 91,137,104 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,240,307 - 1,240,768 (+)NCBICelera
RGSC_v3.1691,139,170 - 91,139,599 (-)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Primary structure of rat ribosomal protein L36a. Gallagher MJ, etal., DNA 1988 May;7(4):269-73.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:863909   PMID:8889548   PMID:15489334   PMID:18400104   PMID:25468996  


Genomics

Comparative Map Data
Rpl36al1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,390,864 - 93,392,258 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl693,390,866 - 93,391,296 (-)EnsemblGRCr8
GRCr8 Ensembl2022,034,086 - 22,034,406 (-)EnsemblGRCr8
mRatBN7.2687,654,808 - 87,656,202 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2022,035,300 - 22,035,620 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1055,343,508 - 55,343,828 (+)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX97,766,179 - 97,768,892 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx688,054,689 - 88,056,086 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,354,124 - 88,355,521 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,793,875 - 87,795,272 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,504,178 - 1,505,581 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,251,253 - 57,251,573 (+)Ensemblrn6Rnor6.0
Rnor_6.0 EnsemblX105,402,867 - 105,405,580 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl181,504,178 - 1,505,570 (+)Ensemblrn6Rnor6.0
Rnor_5.06100,934,129 - 100,935,447 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4691,135,710 - 91,137,104 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,240,307 - 1,240,768 (+)NCBICelera
RGSC_v3.1691,139,170 - 91,139,599 (-)NCBI
Cytogenetic Map6q24NCBI
RPL36AL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,618,530 - 49,620,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,618,530 - 49,620,649 (-)Ensemblhg38GRCh38
GRCh371450,085,248 - 50,087,344 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,155,156 - 49,157,099 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341449,155,158 - 49,157,099NCBI
Celera1429,945,224 - 29,947,167 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,202,537 - 30,204,534 (-)NCBIHuRef
CHM1_11450,024,410 - 50,026,407 (-)NCBICHM1_1
T2T-CHM13v2.01443,816,754 - 43,818,850 (-)NCBIT2T-CHM13v2.0
Rpl36al
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,229,508 - 69,230,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,229,505 - 69,230,857 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381269,182,734 - 69,184,067 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,182,731 - 69,184,083 (-)Ensemblmm10GRCm38
MGSCv371270,283,721 - 70,285,054 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361270,101,346 - 70,102,645 (-)NCBIMGSCv36mm8
Celera1270,274,574 - 70,275,907 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rpl36al
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,032,499 - 13,033,876 (+)Ensembl
ChiLan1.0NW_00495540913,032,499 - 13,033,876 (+)NCBIChiLan1.0ChiLan1.0
RPL36AL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,743,254 - 50,745,261 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,959,759 - 49,961,766 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,196,924 - 30,198,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,506,849 - 48,508,844 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,506,945 - 48,507,265 (-)EnsemblpanPan2panpan1.1
RPL36AL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,243,619 - 26,244,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,243,617 - 26,245,386 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha825,997,820 - 25,998,981 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0826,421,914 - 26,423,075 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,421,912 - 26,423,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,077,288 - 26,078,449 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,150,913 - 26,152,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,468,046 - 26,469,207 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl36al
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,287,428 - 58,288,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936583400,165 - 401,479 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936583400,117 - 401,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL36AL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,658,516 - 26,660,461 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605314,974,854 - 14,976,798 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl36al
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,027,587 - 19,085,171 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473119,082,925 - 19,084,464 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl36al
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1782,844,190 - 82,845,629 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl36al1
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:42
Interacting mature miRNAs:43
Transcripts:ENSRNOT00000048198
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
D6S1904  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0181,552,878 - 1,553,022NCBIRnor5.0
RGSC_v3.4181,635,616 - 1,635,756UniSTSRGSC3.4
Celera181,240,521 - 1,240,661UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 134 57 60 41 86 41 298 168 11 125 71 73 19 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000043171   ⟹   ENSRNOP00000048003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1055,343,508 - 55,343,828 (+)Ensembl
Rnor_6.0 Ensembl1057,251,253 - 57,251,573 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000048198   ⟹   ENSRNOP00000049014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl181,504,178 - 1,505,570 (+)Ensembl
RefSeq Acc Id: NM_031105   ⟹   NP_112367
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,390,864 - 93,392,258 (-)NCBI
mRatBN7.2687,654,808 - 87,656,202 (-)NCBI
Rnor_6.0181,504,178 - 1,505,581 (+)NCBI
Rnor_5.06100,934,129 - 100,935,447 (-)NCBI
RGSC_v3.4691,135,710 - 91,137,104 (-)RGD
Celera686,154,035 - 86,155,429 (-)RGD
Sequence:
RefSeq Acc Id: NP_112367   ⟸   NM_031105
- UniProtKB: P83883 (UniProtKB/Swiss-Prot),   B2RYQ8 (UniProtKB/TrEMBL),   F8WFR5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048003   ⟸   ENSRNOT00000043171
Ensembl Acc Id: ENSRNOP00000049014   ⟸   ENSRNOT00000048198

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P83883-F1-model_v2 AlphaFold P83883 1-106 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700629
Promoter ID:EPDNEW_R11153
Type:multiple initiation site
Name:LOC108348287_1
Description:60S ribosomal protein L36a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0181,504,178 - 1,504,238EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621156 AgrOrtholog
BioCyc Gene G2FUF-37259 BioCyc
Ensembl Genes ENSRNOG00000011494 Ensembl
  ENSRNOG00000031022 Ensembl
  ENSRNOG00000031315 Ensembl, ENTREZGENE
  ENSRNOG00000032408 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043171 ENTREZGENE
  ENSRNOT00000047773.6 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.80 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919511 IMAGE-MGC_LOAD
InterPro Ribosomal_eL44 UniProtKB/TrEMBL
  Ribosomal_LSU_eL42 UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
KEGG Report rno:292964 UniProtKB/TrEMBL
  rno:81769 UniProtKB/TrEMBL
MGC_CLONE MGC:72794 IMAGE-MGC_LOAD
NCBI Gene 81769 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 UniProtKB/TrEMBL
Pfam Ribosomal_L44 UniProtKB/TrEMBL
PhenoGen Rpl36al1 PhenoGen
PROSITE RIBOSOMAL_L44E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011494 RatGTEx
  ENSRNOG00000031022 RatGTEx
  ENSRNOG00000031315 RatGTEx
  ENSRNOG00000032408 RatGTEx
Superfamily-SCOP Zn-binding ribosomal proteins UniProtKB/TrEMBL
UniProt B2RYQ8 ENTREZGENE, UniProtKB/TrEMBL
  F8WFR5 ENTREZGENE, UniProtKB/TrEMBL
  P83883 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-27 Rpl36al1  ribosomal protein L36A like 1  Rpl36al  ribosomal protein L36A-like  Name and Symbol changed 629549 APPROVED
2022-04-07 Rpl36al  ribosomal protein L36A-like  Rpl36al  ribosomal protein L36a-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-19 Rpl36al  ribosomal protein L36a-like  Rpl36a  large subunit ribosomal protein L36a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-08-07 Rpl36a  large subunit ribosomal protein L36a      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 105 amino acids 633928