RPL36AL (ribosomal protein L36a like) - Rat Genome Database

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Gene: RPL36AL (ribosomal protein L36a like) Pan paniscus
Analyze
Symbol: RPL36AL
Name: ribosomal protein L36a like
RGD ID: 11953936
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN response to retinoic acid (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN cytosol (inferred); cytosolic large ribosomal subunit (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L36a-like; ribosomal protein eL42-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,743,254 - 50,745,261 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,959,759 - 49,961,766 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,196,924 - 30,198,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,506,849 - 48,508,844 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,506,945 - 48,507,265 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL36AL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,743,254 - 50,745,261 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,959,759 - 49,961,766 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,196,924 - 30,198,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,506,849 - 48,508,844 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,506,945 - 48,507,265 (-)Ensemblpanpan1.1panPan2
RPL36AL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,618,530 - 49,620,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,618,530 - 49,620,626 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,085,248 - 50,087,344 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,155,156 - 49,157,099 (-)NCBINCBI36Build 36hg18NCBI36
Build 341449,155,158 - 49,157,099NCBI
Celera1429,945,224 - 29,947,167 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,202,537 - 30,204,534 (-)NCBIHuRef
CHM1_11450,024,410 - 50,026,407 (-)NCBICHM1_1
T2T-CHM13v2.01443,816,754 - 43,818,850 (-)NCBIT2T-CHM13v2.0
Rpl36al
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,229,508 - 69,230,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,229,505 - 69,230,857 (-)EnsemblGRCm39 Ensembl
GRCm381269,182,734 - 69,184,067 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,182,731 - 69,184,083 (-)EnsemblGRCm38mm10GRCm38
MGSCv371270,283,721 - 70,285,054 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,101,346 - 70,102,645 (-)NCBIMGSCv36mm8
Celera1270,274,574 - 70,275,907 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rpl36al1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,390,864 - 93,392,258 (-)NCBIGRCr8
mRatBN7.2687,654,808 - 87,656,202 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,343,508 - 55,343,828 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX97,766,179 - 97,768,892 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,054,689 - 88,056,086 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,354,124 - 88,355,521 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,793,875 - 87,795,272 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,504,178 - 1,505,581 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,251,253 - 57,251,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,402,867 - 105,405,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,504,178 - 1,505,570 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,934,129 - 100,935,447 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,135,710 - 91,137,104 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,139,170 - 91,139,599 (-)NCBI
Celera181,240,307 - 1,240,768 (+)NCBICelera
Cytogenetic Map6q24NCBI
Rpl36al
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540913,032,499 - 13,033,876 (+)NCBIChiLan1.0ChiLan1.0
RPL36AL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,243,619 - 26,244,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,243,617 - 26,245,386 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,997,820 - 25,998,981 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,421,914 - 26,423,075 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,421,912 - 26,423,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,077,288 - 26,078,449 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,150,913 - 26,152,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,468,046 - 26,469,207 (-)NCBIUU_Cfam_GSD_1.0
Rpl36al
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,287,428 - 58,288,847 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936583400,117 - 401,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL36AL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,658,516 - 26,660,461 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605314,974,854 - 14,976,798 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl36al
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,027,587 - 19,085,171 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473119,082,925 - 19,084,464 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008957120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000007206   ⟹   ENSPPAP00000001453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1448,506,945 - 48,507,265 (-)Ensembl
RefSeq Acc Id: XM_008957120   ⟹   XP_008955368
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21550,743,254 - 50,745,261 (-)NCBI
NHGRI_mPanPan11449,959,759 - 49,961,766 (-)NCBI
Mhudiblu_PPA_v01430,196,924 - 30,198,944 (-)NCBI
PanPan1.11448,506,849 - 48,508,844 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008955368 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000063.1
  ENSPPAP00000001453
  ENSPPAP00000001453.1
Reference Protein Sequences
RefSeq Acc Id: XP_008955368   ⟸   XM_008957120
- UniProtKB: A0A2R8Z918 (UniProtKB/TrEMBL),   A0A2R8Z5R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001453   ⟸   ENSPPAT00000007206


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000000113 UniProtKB/TrEMBL
  ENSPPAG00000006610 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000000131.1 UniProtKB/TrEMBL
  ENSPPAT00000007206.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.80 UniProtKB/TrEMBL
InterPro Ribosomal_L44e UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
KEGG Report pps:103783851 UniProtKB/TrEMBL
NCBI Gene RPL36AL ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L36A UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L36A-LIKE UniProtKB/TrEMBL
  PTHR10369 UniProtKB/TrEMBL
Pfam Ribosomal_L44 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L44E UniProtKB/TrEMBL
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt A0A2R8Z5R2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Z918 ENTREZGENE, UniProtKB/TrEMBL