Symbol:
Calb2
Name:
calbindin 2
RGD ID:
620981
Description:
Enables calcium ion binding activity. Predicted to be involved in regulation of presynaptic cytosolic calcium ion concentration. Located in cuticular plate and stereocilium. Is active in synapse. Orthologous to human CALB2 (calbindin 2); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH (R)-lipoic acid; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
calretinin; CR; MGC105356
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
CALB2 (calbindin 2) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Calb2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Calb2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
CALB2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
CALB2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Calb2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
CALB2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CALB2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Calb2 (calbindin 2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
CALB2 (calbindin 2)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Calb2 (calbindin 2)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
calb2a (calbindin 2a)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
calb2b (calbindin 2b)
Alliance
DIOPT (Ensembl Compara|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
Cbp53E
Alliance
DIOPT (InParanoid|OMA|OrthoInspector|PANTHER|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
calb2
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Candidate Gene For:
Eau8
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 55,023,849 - 55,050,858 (-) NCBI GRCr8 mRatBN7.2 19 38,114,435 - 38,141,438 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 38,114,424 - 38,141,438 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 44,920,886 - 44,947,919 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 45,574,230 - 45,601,269 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 47,883,801 - 47,910,840 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 41,482,743 - 41,509,617 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 41,482,728 - 41,509,658 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 52,310,641 - 52,337,700 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 40,023,072 - 40,051,150 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 40,027,952 - 40,056,031 (-) NCBI Celera 19 37,512,226 - 37,538,062 (-) NCBI Celera Cytogenetic Map 19 q12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Calb2 Rat (R)-lipoic acid multiple interactions EXP 6480464 Thioctic Acid affects the reaction [Propylthiouracil results in increased expression of CALB2 mRNA] CTD PMID:31068541 Calb2 Rat 1,2-dimethylhydrazine increases expression ISO Calb2 (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in increased expression of CALB2 mRNA CTD PMID:22206623 Calb2 Rat 17beta-estradiol affects expression ISO CALB2 (Homo sapiens) 6480464 Estradiol affects the expression of CALB2 mRNA CTD PMID:14699072 Calb2 Rat 17beta-estradiol increases expression ISO CALB2 (Homo sapiens) 6480464 Estradiol results in increased expression of CALB2 mRNA CTD PMID:17121429 and PMID:17962382 Calb2 Rat 2,2',4,4',5,5'-hexachlorobiphenyl multiple interactions ISO Calb2 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Calb2 Rat 2,2',5,5'-tetrachlorobiphenyl multiple interactions ISO Calb2 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Calb2 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Calb2 (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of CALB2 mRNA CTD PMID:21570461 Calb2 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of CALB2 mRNA CTD PMID:32109520 Calb2 Rat 2,3,7,8-Tetrachlorodibenzofuran decreases expression EXP 6480464 2 more ... CTD PMID:32109520 Calb2 Rat 2-hydroxypropanoic acid decreases expression ISO CALB2 (Homo sapiens) 6480464 Lactic Acid results in decreased expression of CALB2 mRNA CTD PMID:30851411 Calb2 Rat 2-palmitoylglycerol increases expression ISO CALB2 (Homo sapiens) 6480464 2-palmitoylglycerol results in increased expression of CALB2 mRNA CTD PMID:37199045 Calb2 Rat 3-chloropropane-1,2-diol increases expression EXP 6480464 alpha-Chlorohydrin results in increased expression of CALB2 mRNA CTD PMID:28522335 Calb2 Rat 3-isobutyl-1-methyl-7H-xanthine multiple interactions ISO CALB2 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CALB2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CALB2 mRNA CTD PMID:28628672 Calb2 Rat 3-methylcholanthrene multiple interactions ISO CALB2 (Homo sapiens) 6480464 Methylcholanthrene promotes the reaction [AHR protein binds to CALB2 promoter] CTD PMID:20348232 Calb2 Rat 5-fluorouracil increases response to substance ISO CALB2 (Homo sapiens) 6480464 CALB2 protein results in increased susceptibility to Fluorouracil CTD PMID:16510598 Calb2 Rat 5-fluorouracil increases expression ISO CALB2 (Homo sapiens) 6480464 Fluorouracil results in increased expression of CALB2 mRNA CTD PMID:16510598 Calb2 Rat 6-propyl-2-thiouracil affects expression EXP 6480464 Propylthiouracil affects the expression of CALB2 mRNA CTD PMID:24780913 Calb2 Rat 6-propyl-2-thiouracil multiple interactions EXP 6480464 Thioctic Acid affects the reaction [Propylthiouracil results in increased expression of CALB2 mRNA] CTD PMID:31068541 Calb2 Rat 6-propyl-2-thiouracil increases expression EXP 6480464 Propylthiouracil results in increased expression of CALB2 mRNA CTD PMID:31068541 Calb2 Rat aflatoxin B1 increases expression ISO CALB2 (Homo sapiens) 6480464 Aflatoxin B1 results in increased expression of CALB2 mRNA CTD PMID:32234424 Calb2 Rat amitrole increases expression EXP 6480464 Amitrole results in increased expression of CALB2 mRNA CTD PMID:38685447 Calb2 Rat ammonium chloride affects expression EXP 6480464 Ammonium Chloride affects the expression of CALB2 mRNA CTD PMID:16483693 Calb2 Rat amphetamine increases expression ISO Calb2 (Mus musculus) 6480464 Amphetamine results in increased expression of CALB2 protein CTD PMID:19059431 Calb2 Rat Ampullosporin multiple interactions EXP 6480464 [ampullosporin co-treated with Ketamine] results in increased expression of CALB2 mRNA CTD PMID:16635253 Calb2 Rat arsane multiple interactions ISO CALB2 (Homo sapiens) 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of CALB2 mRNA CTD PMID:32525701 Calb2 Rat arsenic atom multiple interactions ISO CALB2 (Homo sapiens) 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of CALB2 mRNA CTD PMID:32525701 Calb2 Rat arsenous acid multiple interactions ISO CALB2 (Homo sapiens) 6480464 Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to CALB2 protein] CTD PMID:26598702 Calb2 Rat asbestos decreases expression ISO CALB2 (Homo sapiens) 6480464 Asbestos results in decreased expression of CALB2 mRNA CTD PMID:22076105 Calb2 Rat benzo[a]pyrene increases expression ISO CALB2 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased expression of CALB2 mRNA CTD PMID:32234424 Calb2 Rat beta-lapachone increases expression ISO CALB2 (Homo sapiens) 6480464 beta-lapachone results in increased expression of CALB2 mRNA CTD PMID:38218311 Calb2 Rat bis(2-ethylhexyl) phthalate increases expression ISO CALB2 (Homo sapiens) 6480464 Diethylhexyl Phthalate results in increased expression of CALB2 mRNA CTD PMID:31163220 Calb2 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of CALB2 mRNA CTD PMID:15901920 more ... Calb2 Rat bisphenol A increases expression ISO CALB2 (Homo sapiens) 6480464 bisphenol A results in increased expression of CALB2 protein CTD PMID:34186270 and PMID:37567409 Calb2 Rat bisphenol A decreases expression ISO Calb2 (Mus musculus) 6480464 bisphenol A results in decreased expression of CALB2 mRNA CTD PMID:32156529 Calb2 Rat bisphenol A increases expression ISO Calb2 (Mus musculus) 6480464 bisphenol A results in increased expression of CALB2 mRNA and bisphenol A results in increased expression of CALB2 protein CTD PMID:32926169 Calb2 Rat bisphenol A decreases expression ISO CALB2 (Homo sapiens) 6480464 bisphenol A results in decreased expression of CALB2 mRNA CTD PMID:31715268 Calb2 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of CALB2 mRNA CTD PMID:31129395 Calb2 Rat bisphenol A increases methylation ISO Calb2 (Mus musculus) 6480464 bisphenol A results in increased methylation of CALB2 promoter CTD PMID:27312807 Calb2 Rat bisphenol A multiple interactions ISO CALB2 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CALB2 mRNA CTD PMID:28628672 Calb2 Rat bisphenol AF increases expression ISO CALB2 (Homo sapiens) 6480464 bisphenol AF results in increased expression of CALB2 protein CTD PMID:34186270 Calb2 Rat Bisphenol B increases expression ISO CALB2 (Homo sapiens) 6480464 bisphenol B results in increased expression of CALB2 protein CTD PMID:34186270 Calb2 Rat bisphenol F multiple interactions ISO CALB2 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CALB2 mRNA CTD PMID:28628672 Calb2 Rat bisphenol F increases expression ISO CALB2 (Homo sapiens) 6480464 bisphenol F results in increased expression of CALB2 protein CTD PMID:34186270 Calb2 Rat Brodifacoum decreases expression EXP 6480464 bromfenacoum results in decreased expression of CALB2 protein CTD PMID:28903499 Calb2 Rat butanal increases expression ISO CALB2 (Homo sapiens) 6480464 butyraldehyde results in increased expression of CALB2 mRNA CTD PMID:26079696 Calb2 Rat Butylparaben increases expression ISO CALB2 (Homo sapiens) 6480464 butylparaben results in increased expression of CALB2 mRNA CTD PMID:17121429 Calb2 Rat C60 fullerene decreases expression EXP 6480464 fullerene C60 results in decreased expression of CALB2 mRNA CTD PMID:19167457 Calb2 Rat cadmium atom increases expression ISO CALB2 (Homo sapiens) 6480464 Cadmium results in increased expression of CALB2 mRNA CTD PMID:21694771 Calb2 Rat carmustine decreases expression ISO CALB2 (Homo sapiens) 6480464 Carmustine results in decreased expression of CALB2 mRNA CTD PMID:15980968 Calb2 Rat cefaloridine decreases expression EXP 6480464 Cephaloridine results in decreased expression of CALB2 mRNA CTD PMID:18500788 Calb2 Rat CGP 52608 multiple interactions ISO CALB2 (Homo sapiens) 6480464 CGP 52608 promotes the reaction [RORA protein binds to CALB2 gene] CTD PMID:28238834 Calb2 Rat chlordecone increases expression ISO Calb2 (Mus musculus) 6480464 Chlordecone results in increased expression of CALB2 mRNA CTD PMID:33711761 Calb2 Rat copper(II) sulfate affects expression ISO CALB2 (Homo sapiens) 6480464 Copper Sulfate affects the expression of CALB2 mRNA CTD PMID:19549813 Calb2 Rat crocidolite asbestos decreases expression ISO CALB2 (Homo sapiens) 6480464 Asbestos and Crocidolite results in decreased expression of CALB2 protein CTD PMID:21570478 Calb2 Rat Cuprizon increases expression EXP 6480464 Cuprizone results in increased expression of CALB2 mRNA CTD PMID:26577399 Calb2 Rat cyclosporin A increases expression ISO CALB2 (Homo sapiens) 6480464 Cyclosporine results in increased expression of CALB2 mRNA CTD PMID:20106945 Calb2 Rat cytarabine decreases expression ISO CALB2 (Homo sapiens) 6480464 Cytarabine results in decreased expression of CALB2 mRNA CTD PMID:21198554 Calb2 Rat DDE multiple interactions EXP 6480464 Dichlorodiphenyl Dichloroethylene inhibits the reaction [Dietary Fats results in increased expression of CALB2 mRNA] CTD PMID:28572628 Calb2 Rat DDT increases expression EXP 6480464 DDT results in increased expression of CALB2 mRNA CTD PMID:30207508 Calb2 Rat dexamethasone multiple interactions ISO CALB2 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CALB2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CALB2 mRNA CTD PMID:28628672 Calb2 Rat diarsenic trioxide multiple interactions ISO CALB2 (Homo sapiens) 6480464 Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to CALB2 protein] CTD PMID:26598702 Calb2 Rat diethylstilbestrol decreases expression EXP 6480464 Diethylstilbestrol results in decreased expression of CALB2 mRNA CTD PMID:36653537 Calb2 Rat dorsomorphin multiple interactions ISO CALB2 (Homo sapiens) 6480464 [NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of CALB2 mRNA CTD PMID:27188386 Calb2 Rat doxorubicin increases expression ISO CALB2 (Homo sapiens) 6480464 Doxorubicin results in increased expression of CALB2 mRNA CTD PMID:30031762 Calb2 Rat ethanol increases expression ISO Calb2 (Mus musculus) 6480464 Ethanol results in increased expression of CALB2 mRNA CTD PMID:30319688 Calb2 Rat ethanol decreases expression EXP 6480464 Ethanol results in decreased expression of CALB2 mRNA CTD PMID:35227807 Calb2 Rat ethylparaben increases expression ISO CALB2 (Homo sapiens) 6480464 ethyl-p-hydroxybenzoate results in increased expression of CALB2 mRNA CTD PMID:37690743 Calb2 Rat flusilazole increases expression EXP 6480464 flusilazole results in increased expression of CALB2 mRNA CTD PMID:33032228 Calb2 Rat flutamide decreases expression EXP 6480464 Flutamide results in decreased expression of CALB2 mRNA CTD PMID:21525395 Calb2 Rat hydroquinone increases expression ISO CALB2 (Homo sapiens) 6480464 hydroquinone results in increased expression of CALB2 mRNA CTD PMID:31256213 Calb2 Rat indometacin multiple interactions ISO CALB2 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CALB2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CALB2 mRNA CTD PMID:28628672 Calb2 Rat ketamine increases expression EXP 6480464 Ketamine results in increased expression of CALB2 mRNA CTD PMID:20080153 Calb2 Rat ketamine multiple interactions EXP 6480464 [ampullosporin co-treated with Ketamine] results in increased expression of CALB2 mRNA CTD PMID:16635253 Calb2 Rat ketoconazole decreases expression EXP 6480464 Ketoconazole results in decreased expression of CALB2 mRNA CTD PMID:36653537 Calb2 Rat L-ascorbic acid multiple interactions EXP 6480464 Ascorbic Acid inhibits the reaction [[lead acetate results in increased abundance of Lead] which results in decreased expression of CALB2 protein] CTD PMID:31708536 Calb2 Rat lead diacetate multiple interactions EXP 6480464 [lead acetate results in increased abundance of Lead] which results in decreased expression of CALB2 protein and Ascorbic Acid inhibits the reaction [[lead acetate results in increased abundance of Lead] which results in decreased expression of CALB2 protein] CTD PMID:31708536 Calb2 Rat lead(0) affects expression ISO CALB2 (Homo sapiens) 6480464 Lead affects the expression of CALB2 mRNA CTD PMID:28903495 Calb2 Rat lead(0) multiple interactions EXP 6480464 [lead acetate results in increased abundance of Lead] which results in decreased expression of CALB2 protein and Ascorbic Acid inhibits the reaction [[lead acetate results in increased abundance of Lead] which results in decreased expression of CALB2 protein] CTD PMID:31708536 Calb2 Rat Licochalcone B increases expression ISO CALB2 (Homo sapiens) 6480464 licochalcone B results in increased expression of CALB2 mRNA CTD PMID:33647349 Calb2 Rat lipoic acid multiple interactions EXP 6480464 Thioctic Acid affects the reaction [Propylthiouracil results in increased expression of CALB2 mRNA] CTD PMID:31068541 Calb2 Rat maneb multiple interactions ISO Calb2 (Mus musculus) 6480464 [Maneb co-treated with Paraquat] results in decreased expression of CALB2 mRNA CTD PMID:36117858 Calb2 Rat methamphetamine decreases expression EXP 6480464 Methamphetamine results in decreased expression of CALB2 mRNA CTD PMID:28619521 Calb2 Rat methimazole increases expression EXP 6480464 Methimazole results in increased expression of CALB2 mRNA CTD PMID:38685447 Calb2 Rat methylisothiazolinone increases expression ISO CALB2 (Homo sapiens) 6480464 2-methyl-4-isothiazolin-3-one results in increased expression of CALB2 mRNA CTD PMID:31629900 Calb2 Rat methylmercury chloride increases expression ISO CALB2 (Homo sapiens) 6480464 methylmercuric chloride results in increased expression of CALB2 mRNA CTD PMID:28001369 and PMID:34089799 Calb2 Rat methylparaben increases expression ISO CALB2 (Homo sapiens) 6480464 methylparaben results in increased expression of CALB2 mRNA CTD PMID:17121429 Calb2 Rat N-Nitrosopyrrolidine increases expression ISO CALB2 (Homo sapiens) 6480464 N-Nitrosopyrrolidine results in increased expression of CALB2 mRNA CTD PMID:32234424 Calb2 Rat nickel atom decreases expression ISO CALB2 (Homo sapiens) 6480464 Nickel results in decreased expression of CALB2 mRNA CTD PMID:25583101 Calb2 Rat O-methyleugenol increases expression ISO CALB2 (Homo sapiens) 6480464 methyleugenol results in increased expression of CALB2 mRNA CTD PMID:32234424 Calb2 Rat oxaliplatin increases response to substance ISO CALB2 (Homo sapiens) 6480464 CALB2 protein results in increased susceptibility to oxaliplatin CTD PMID:16510598 Calb2 Rat oxaliplatin increases expression ISO CALB2 (Homo sapiens) 6480464 oxaliplatin results in increased expression of CALB2 mRNA CTD PMID:16510598 Calb2 Rat ozone multiple interactions ISO Calb2 (Mus musculus) 6480464 [Air Pollutants results in increased abundance of Ozone] which results in increased expression of CALB2 mRNA CTD PMID:27106289 Calb2 Rat panobinostat increases expression ISO CALB2 (Homo sapiens) 6480464 panobinostat results in increased expression of CALB2 mRNA CTD PMID:26272509 Calb2 Rat panobinostat multiple interactions ISO CALB2 (Homo sapiens) 6480464 [NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of CALB2 mRNA CTD PMID:27188386 Calb2 Rat paraquat multiple interactions ISO Calb2 (Mus musculus) 6480464 [Maneb co-treated with Paraquat] results in decreased expression of CALB2 mRNA CTD PMID:36117858 Calb2 Rat PCB138 increases expression EXP 6480464 2 more ... CTD PMID:21673325 Calb2 Rat PCB138 multiple interactions ISO Calb2 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Calb2 Rat pentanal increases expression ISO CALB2 (Homo sapiens) 6480464 pentanal results in increased expression of CALB2 mRNA CTD PMID:26079696 Calb2 Rat picrotoxin decreases expression EXP 6480464 Picrotoxin results in decreased expression of CALB2 protein CTD PMID:15382257 Calb2 Rat pirinixic acid increases expression ISO Calb2 (Mus musculus) 6480464 pirinixic acid results in increased expression of CALB2 mRNA CTD PMID:20813756 Calb2 Rat pirinixic acid decreases expression EXP 6480464 pirinixic acid results in decreased expression of CALB2 mRNA CTD PMID:19162173 Calb2 Rat potassium dichromate increases expression ISO Calb2 (Mus musculus) 6480464 Potassium Dichromate results in increased expression of CALB2 mRNA CTD PMID:23608068 Calb2 Rat rac-lactic acid decreases expression ISO CALB2 (Homo sapiens) 6480464 Lactic Acid results in decreased expression of CALB2 mRNA CTD PMID:30851411 Calb2 Rat raloxifene increases expression ISO CALB2 (Homo sapiens) 6480464 Raloxifene Hydrochloride results in increased expression of CALB2 mRNA CTD PMID:17962382 Calb2 Rat rotenone affects expression ISO Calb2 (Mus musculus) 6480464 Rotenone affects the expression of CALB2 mRNA CTD PMID:23186747 Calb2 Rat SB 431542 multiple interactions ISO CALB2 (Homo sapiens) 6480464 [NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of CALB2 mRNA CTD PMID:27188386 Calb2 Rat simvastatin decreases expression EXP 6480464 Simvastatin results in decreased expression of CALB2 protein CTD PMID:20217863 Calb2 Rat sodium arsenate multiple interactions ISO CALB2 (Homo sapiens) 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of CALB2 mRNA CTD PMID:32525701 Calb2 Rat sodium arsenite affects methylation ISO CALB2 (Homo sapiens) 6480464 sodium arsenite affects the methylation of CALB2 gene CTD PMID:28589171 Calb2 Rat sodium arsenite increases expression ISO CALB2 (Homo sapiens) 6480464 sodium arsenite results in increased expression of CALB2 mRNA CTD PMID:34032870 and PMID:38568856 Calb2 Rat sodium arsenite decreases expression ISO CALB2 (Homo sapiens) 6480464 sodium arsenite results in decreased expression of CALB2 mRNA CTD PMID:29301061 Calb2 Rat sodium arsenite affects expression ISO CALB2 (Homo sapiens) 6480464 sodium arsenite affects the expression of CALB2 mRNA CTD PMID:29319823 Calb2 Rat sotorasib multiple interactions ISO CALB2 (Homo sapiens) 6480464 [sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of CALB2 mRNA CTD PMID:36139627 Calb2 Rat sterigmatocystin decreases expression EXP 6480464 Sterigmatocystin results in decreased expression of CALB2 mRNA CTD PMID:34126181 Calb2 Rat temozolomide decreases expression ISO CALB2 (Homo sapiens) 6480464 Temozolomide results in decreased expression of CALB2 mRNA CTD PMID:31758290 Calb2 Rat toluene increases expression EXP 6480464 Toluene results in increased expression of CALB2 mRNA CTD PMID:22967744 Calb2 Rat trametinib multiple interactions ISO CALB2 (Homo sapiens) 6480464 [sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of CALB2 mRNA CTD PMID:36139627 Calb2 Rat trichloroethene decreases expression EXP 6480464 Trichloroethylene results in decreased expression of CALB2 mRNA CTD PMID:33387578 Calb2 Rat trichostatin A increases expression ISO CALB2 (Homo sapiens) 6480464 trichostatin A results in increased expression of CALB2 mRNA CTD PMID:24935251 Calb2 Rat triclosan decreases expression ISO CALB2 (Homo sapiens) 6480464 Triclosan results in decreased expression of CALB2 mRNA CTD PMID:30510588 Calb2 Rat valproic acid increases expression ISO CALB2 (Homo sapiens) 6480464 Valproic Acid results in increased expression of CALB2 mRNA CTD PMID:24383497 more ...
(R)-lipoic acid (EXP) 1,2-dimethylhydrazine (ISO) 17beta-estradiol (ISO) 2,2',4,4',5,5'-hexachlorobiphenyl (ISO) 2,2',5,5'-tetrachlorobiphenyl (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2,3,7,8-Tetrachlorodibenzofuran (EXP) 2-hydroxypropanoic acid (ISO) 2-palmitoylglycerol (ISO) 3-chloropropane-1,2-diol (EXP) 3-isobutyl-1-methyl-7H-xanthine (ISO) 3-methylcholanthrene (ISO) 5-fluorouracil (ISO) 6-propyl-2-thiouracil (EXP) aflatoxin B1 (ISO) amitrole (EXP) ammonium chloride (EXP) amphetamine (ISO) Ampullosporin (EXP) arsane (ISO) arsenic atom (ISO) arsenous acid (ISO) asbestos (ISO) benzo[a]pyrene (ISO) beta-lapachone (ISO) bis(2-ethylhexyl) phthalate (ISO) bisphenol A (EXP,ISO) bisphenol AF (ISO) Bisphenol B (ISO) bisphenol F (ISO) Brodifacoum (EXP) butanal (ISO) Butylparaben (ISO) C60 fullerene (EXP) cadmium atom (ISO) carmustine (ISO) cefaloridine (EXP) CGP 52608 (ISO) chlordecone (ISO) copper(II) sulfate (ISO) crocidolite asbestos (ISO) Cuprizon (EXP) cyclosporin A (ISO) cytarabine (ISO) DDE (EXP) DDT (EXP) dexamethasone (ISO) diarsenic trioxide (ISO) diethylstilbestrol (EXP) dorsomorphin (ISO) doxorubicin (ISO) ethanol (EXP,ISO) ethylparaben (ISO) flusilazole (EXP) flutamide (EXP) hydroquinone (ISO) indometacin (ISO) ketamine (EXP) ketoconazole (EXP) L-ascorbic acid (EXP) lead diacetate (EXP) lead(0) (EXP,ISO) Licochalcone B (ISO) lipoic acid (EXP) maneb (ISO) methamphetamine (EXP) methimazole (EXP) methylisothiazolinone (ISO) methylmercury chloride (ISO) methylparaben (ISO) N-Nitrosopyrrolidine (ISO) nickel atom (ISO) O-methyleugenol (ISO) oxaliplatin (ISO) ozone (ISO) panobinostat (ISO) paraquat (ISO) PCB138 (EXP,ISO) pentanal (ISO) picrotoxin (EXP) pirinixic acid (EXP,ISO) potassium dichromate (ISO) rac-lactic acid (ISO) raloxifene (ISO) rotenone (ISO) SB 431542 (ISO) simvastatin (EXP) sodium arsenate (ISO) sodium arsenite (ISO) sotorasib (ISO) sterigmatocystin (EXP) temozolomide (ISO) toluene (EXP) trametinib (ISO) trichloroethene (EXP) trichostatin A (ISO) triclosan (ISO) valproic acid (ISO)
Cellular Component
cuticular plate (IDA) cytosol (IBA,IEA,ISO) dendriole (ISO,ISS) dendrite (IBA,IEA) gap junction (ISO) neuronal cell body (ISO) nucleus (IBA) parallel fiber to Purkinje cell synapse (ISO,ISS) presynapse (IEA) stereocilium (IDA) synapse (EXP,IBA,IDA,IEA,IEP) terminal bouton (HDA,IBA) vestibular calyx terminal (ISO)
1.
De novo expression of calretinin in trimethyltin-induced degeneration of developing rat hippocampus.
Businaro R, etal., Brain Res Mol Brain Res 2002 Jan 31;98(1-2):141-4.
2.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.
The concentrations of calcium buffering proteins in mammalian cochlear hair cells.
Hackney CM, etal., J Neurosci. 2005 Aug 24;25(34):7867-75.
4.
Calretinin and CD34 immunoreactivity of the endometrial stroma in normal endometrium and change of the immunoreactivity in dysfunctional uterine bleeding with evidence of 'disordered endometrial stroma'.
Mai KT, etal., Pathology. 2008 Aug;40(5):493-9.
5.
Rat ISS GO annotations from MGI mouse gene data--August 2006
MGD data from the GO Consortium
6.
Electronic Transfer of LocusLink and RefSeq Data
NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.
Structural and biochemical characterization of neuronal calretinin domain I-II (residues 1-100). Comparison to homologous calbindin D28k domain I-II (residues 1-93).
Palczewska M, etal., Eur J Biochem. 2001 Dec;268(23):6229-37.
8.
GOA pipeline
RGD automated data pipeline
9.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
10.
Comprehensive gene review and curation
RGD comprehensive gene curation
11.
Cytosolic Ca2+ buffers.
Schwaller B, Cold Spring Harb Perspect Biol. 2010 Nov;2(11):a004051. doi: 10.1101/cshperspect.a004051. Epub 2010 Oct 13.
12.
Nucleotide sequence of rat calretinin cDNA.
Strauss KI and Jacobowitz DM, Neurochem Int 1993 Jun;22(6):541-6.
13.
Immunocytochemical detection of calretinin in the claustrum and endopiriform nucleus of the chinchilla.
Szalak R, etal., Pol J Vet Sci. 2015;18(4):857-63. doi: 10.1515/pjvs-2015-0111.
14.
Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins.
Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
15.
Distribution of calretinin, calbindin D28k, and parvalbumin in subcellular fractions of rat cerebellum: effects of calcium.
Winsky L and Kuznicki J, J Neurochem. 1995 Jul;65(1):381-8.
Calb2 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 55,023,849 - 55,050,858 (-) NCBI GRCr8 mRatBN7.2 19 38,114,435 - 38,141,438 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 38,114,424 - 38,141,438 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 44,920,886 - 44,947,919 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 45,574,230 - 45,601,269 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 47,883,801 - 47,910,840 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 41,482,743 - 41,509,617 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 41,482,728 - 41,509,658 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 52,310,641 - 52,337,700 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 40,023,072 - 40,051,150 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 40,027,952 - 40,056,031 (-) NCBI Celera 19 37,512,226 - 37,538,062 (-) NCBI Celera Cytogenetic Map 19 q12 NCBI
CALB2 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 71,358,723 - 71,390,433 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 71,358,713 - 71,390,436 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 71,392,626 - 71,424,336 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 69,950,127 - 69,981,842 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 69,950,126 - 69,981,836 NCBI Celera 16 55,708,128 - 55,740,202 (+) NCBI Celera Cytogenetic Map 16 q22.2 NCBI HuRef 16 57,186,719 - 57,192,385 (+) NCBI HuRef HuRef 16 57,160,840 - 57,186,546 (+) NCBI HuRef CHM1_1 16 72,805,453 - 72,837,193 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 77,174,637 - 77,207,658 (+) NCBI T2T-CHM13v2.0
Calb2 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 110,869,158 - 110,894,844 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 110,864,134 - 110,894,842 (-) Ensembl GRCm39 Ensembl GRCm38 8 110,142,526 - 110,168,212 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 110,137,502 - 110,168,210 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 112,666,438 - 112,692,106 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 113,031,667 - 113,057,335 (-) NCBI MGSCv36 mm8 Celera 8 114,365,078 - 114,391,219 (-) NCBI Celera Cytogenetic Map 8 D3 NCBI cM Map 8 57.44 NCBI
Calb2 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955484 4,075,067 - 4,103,559 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955484 4,075,103 - 4,103,509 (+) NCBI ChiLan1.0 ChiLan1.0
CALB2 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 82,768,831 - 82,801,912 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 88,702,425 - 88,982,493 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 16 53,620,317 - 53,653,372 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 16 71,195,770 - 71,227,937 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 71,195,770 - 71,227,937 (+) Ensembl panpan1.1 panPan2
CALB2 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 77,178,158 - 77,205,663 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 77,177,951 - 77,205,671 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 77,139,985 - 77,167,208 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 77,616,925 - 77,644,159 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 77,616,951 - 77,644,096 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 77,437,354 - 77,464,585 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 77,260,506 - 77,287,715 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 77,759,356 - 77,786,581 (+) NCBI UU_Cfam_GSD_1.0
Calb2 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 37,217,095 - 37,244,688 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936475 22,341,822 - 22,372,609 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936475 22,344,416 - 22,372,015 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CALB2 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 14,391,857 - 14,420,663 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 14,392,220 - 14,420,663 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 13,904,114 - 13,933,267 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CALB2 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 5 54,503,635 - 54,538,304 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 5 54,504,082 - 54,538,441 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666047 17,312,991 - 17,345,343 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Calb2
.
Predicted Target Of
Count of predictions: 88 Count of miRNA genes: 73 Interacting mature miRNAs: 83 Transcripts: ENSRNOT00000022943 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
61350 Bp32 Blood pressure QTL 32 0.012 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 19 20483575 57337602 Rat 61447 Tcas1 Tongue tumor susceptibility QTL 1 6.08 tongue integrity trait (VT:0010553) squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875) 19 2316121 47316121 Rat 724546 Kidm3 Kidney mass QTL 3 3.1 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 19 29322490 57337602 Rat 7411549 Bw130 Body weight QTL 130 5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 15455860 57337602 Rat 1358200 Insglur2 Insulin/glucose ratio QTL 2 4.1 blood glucose amount (VT:0000188) serum glucose level (CMO:0000543) 19 33838214 55283146 Rat 1331737 Uae29 Urinary albumin excretion QTL 29 5.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 4096155 55283277 Rat 724518 Uae19 Urinary albumin excretion QTL 19 5.5 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 19 7457249 42983518 Rat 2298478 Eau8 Experimental allergic uveoretinitis QTL 8 0.0163 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 19 17154433 57337602 Rat 8694186 Bw152 Body weight QTL 152 3.34 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 569374 45569374 Rat 61423 Cia14 Collagen induced arthritis QTL 14 3 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 19 10827970 43544039 Rat 1578764 Stresp19 Stress response QTL 19 3.6 0.001 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 19 15630201 57337602 Rat 1331788 Rf45 Renal function QTL 45 2.818 kidney blood vessel physiology trait (VT:0100012) absolute change in renal blood flow rate (CMO:0001168) 19 15605023 46559041 Rat 2317848 Alcrsp21 Alcohol response QTL 21 1.899999976158142 0.05 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 19 3204777 48204777 Rat 9589102 Slep13 Serum leptin concentration QTL 13 4.63 0.001 blood leptin amount (VT:0005667) plasma leptin level (CMO:0000781) 19 569374 45569374 Rat 7247442 Uae39 Urinary albumin excretion QTL 39 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 19 2187927 46708701 Rat 1549835 Tcas7 Tongue tumor susceptibility QTL 7 0.001 tongue integrity trait (VT:0010553) squamous cell carcinoma of the head and neck tumor number (CMO:0001876) 19 24817978 39654489 Rat 724566 Uae12 Urinary albumin excretion QTL 12 5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 2187927 56457239 Rat 724565 Tcas5 Tongue tumor susceptibility QTL 5 10.04 tongue integrity trait (VT:0010553) number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) 19 9977753 39654489 Rat
D19Rat71
Rat Assembly Chr Position (strand) Source JBrowse GRCr8 19 55,039,510 - 55,039,721 (+) Marker Load Pipeline mRatBN7.2 19 38,130,095 - 38,130,307 (-) MAPPER mRatBN7.2 Rnor_6.0 19 41,493,877 - 41,494,088 NCBI Rnor6.0 Rnor_5.0 19 52,321,960 - 52,322,171 UniSTS Rnor5.0 RH 3.4 Map 19 437.4 RGD RH 3.4 Map 19 437.4 UniSTS RH 2.0 Map 19 481.8 RGD SHRSP x BN Map 19 27.8698 RGD Cytogenetic Map 19 q12 UniSTS
X73985
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 19 38,114,703 - 38,114,871 (-) MAPPER mRatBN7.2 Rnor_6.0 19 41,509,181 - 41,509,348 NCBI Rnor6.0 Rnor_5.0 19 52,337,264 - 52,337,431 UniSTS Rnor5.0 RGSC_v3.4 19 40,023,341 - 40,023,508 UniSTS RGSC3.4 Celera 19 37,512,495 - 37,512,662 UniSTS Cytogenetic Map 19 q12 UniSTS
RH138609
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 19 38,114,524 - 38,114,704 (-) MAPPER mRatBN7.2 Rnor_6.0 19 41,509,348 - 41,509,527 NCBI Rnor6.0 Rnor_5.0 19 52,337,431 - 52,337,610 UniSTS Rnor5.0 RGSC_v3.4 19 40,023,162 - 40,023,341 UniSTS RGSC3.4 Celera 19 37,512,316 - 37,512,495 UniSTS RH 3.4 Map 19 437.3 UniSTS Cytogenetic Map 19 q12 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
8
27
103
48
48
30
25
30
5
146
61
93
38
60
18
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Ensembl Acc Id:
ENSRNOT00000022943 ⟹ ENSRNOP00000022943
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 38,114,435 - 38,141,438 (-) Ensembl Rnor_6.0 Ensembl 19 41,482,728 - 41,509,658 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000096342 ⟹ ENSRNOP00000090456
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 38,114,424 - 38,138,156 (-) Ensembl
RefSeq Acc Id:
NM_053988 ⟹ NP_446440
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 55,023,849 - 55,050,858 (-) NCBI mRatBN7.2 19 38,114,435 - 38,141,438 (-) NCBI Rnor_6.0 19 41,482,743 - 41,509,617 (+) NCBI Rnor_5.0 19 52,310,641 - 52,337,700 (+) NCBI RGSC_v3.4 19 40,023,072 - 40,051,150 (-) RGD Celera 19 37,512,226 - 37,538,062 (-) RGD
Sequence:
GGGCGGCACCGAGTGACAGCGCTGAGAGGCTTAAGATCTCCGGAGCCGCTCGCCATGGCTGGCCCGCAGCAGCAGCCCCCTTACCTGCACCTGGCCGAGCTGACTGCATCCCAGTTCCTGGAAATCTG
hide sequence
RefSeq Acc Id:
NP_446440 ⟸ NM_053988
- UniProtKB:
P47728 (UniProtKB/Swiss-Prot), A6IZ54 (UniProtKB/TrEMBL), A0A8I6ADK6 (UniProtKB/TrEMBL)
- Sequence:
MAGPQQQPPYLHLAELTASQFLEIWKHFDADGNGYIEGKELENFFQELEKARKGSGMMSKSDNFGEKMKEFMQKYDKNSDGKIEMAELAQILPTEENFLLCFRQHVGSSAEFMEAWRKYDTDRSGYIE
hide sequence
Ensembl Acc Id:
ENSRNOP00000022943 ⟸ ENSRNOT00000022943
Ensembl Acc Id:
ENSRNOP00000090456 ⟸ ENSRNOT00000096342
RGD ID: 13701129 Promoter ID: EPDNEW_R11653 Type: single initiation site Name: Calb2_1 Description: calbindin 2 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 19 41,482,726 - 41,482,786 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2002-08-06
Calb2
calbindin 2
Symbol and Name status set to provisional
70820 PROVISIONAL
