Slc34a2 (solute carrier family 34 member 2) - Rat Genome Database

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Gene: Slc34a2 (solute carrier family 34 member 2) Rattus norvegicus
Analyze
Symbol: Slc34a2
Name: solute carrier family 34 member 2
RGD ID: 620889
Description: Enables protein domain specific binding activity and sodium:phosphate symporter activity. Involved in response to estradiol; response to fructose; and sodium-dependent phosphate transport. Located in apical plasma membrane; brush border membrane; and microvillus membrane. Human ortholog(s) of this gene implicated in pulmonary alveolar microlithiasis. Orthologous to human SLC34A2 (solute carrier family 34 member 2); PARTICIPATES IN phosphate transport pathway; INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: na(+)-dependent phosphate cotransporter 2B; na(+)/Pi cotransporter 2B; naPi-2b; rNaPi IIb; sodium-dependent phosphate transport protein 2B; sodium-phosphate transport protein 2B; sodium/phosphate cotransporter 2B; solute carrier family 34 (sodium phosphate), member 2; solute carrier family 34 (type II sodium/phosphate contransporter), member 2; solute carrier family 34 (type II sodium/phosphate cotransporter), member 2; type IIb sodium-phosphate transporter
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,123,313 - 62,153,020 (-)NCBIGRCr8
mRatBN7.21457,910,931 - 57,930,236 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1457,910,480 - 57,930,436 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1462,312,729 - 62,331,995 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01463,631,450 - 63,650,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01460,028,211 - 60,047,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,257,211 - 60,276,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,256,712 - 60,276,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,375,980 - 60,395,841 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,660,006 - 62,679,311 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11462,661,945 - 62,674,066 (-)NCBI
Celera1457,011,613 - 57,030,915 (-)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Slc34a2Ratgenetic disease  ISOSLC34A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
Slc34a2Rathereditary breast ovarian cancer syndrome  ISOSLC34A2 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary breast ovarian cancer syndromeClinVarPMID:25741868
Slc34a2Ratpulmonary alveolar microlithiasis  ISOSLC34A2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11287838 more ...
Object Symbol
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Original Reference(s)
Slc34a2RatDrug-Related Side Effects and Adverse Reactions  ISOSLC34A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15805072
Slc34a2Ratlung non-small cell carcinoma  ISOSLC34A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22617245 and PMID:22919003
Slc34a2Ratpulmonary alveolar microlithiasis  ISOSLC34A2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
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Original Reference(s)
Slc34a2Ratpulmonary alveolar microlithiasis  ISOSLC34A2 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Slc34a2Rat1,2-dimethylhydrazine decreases expressionISOSlc34a2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SLC34A2 mRNACTDPMID:22206623
Slc34a2Rat1,3-dinitrobenzene decreases expressionEXP 64804643-dinitrobenzene results in decreased expression of SLC34A2 mRNACTDPMID:21983209
Slc34a2Rat17alpha-ethynylestradiol increases expressionISOSlc34a2 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of SLC34A2 mRNACTDPMID:12072388
Slc34a2Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of SLC34A2 mRNACTDPMID:26496021
Slc34a2Rat17beta-estradiol increases expressionISOSlc34a2 (Mus musculus)6480464Estradiol results in increased expression of SLC34A2 mRNACTDPMID:39298647
Slc34a2Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of SLC34A2 mRNACTDPMID:32145629
Slc34a2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SLC34A2 mRNACTDPMID:21215274
Slc34a2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSlc34a2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SLC34A2 mRNACTDPMID:26377647 and PMID:28922406
Slc34a2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSlc34a2 (Mus musculus)6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in increased expression of SLC34A2 mRNACTDPMID:25975270
Slc34a2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of SLC34A2 mRNA]CTDPMID:21215274
Slc34a2Rat4-hydroxyphenyl retinamide increases expressionISOSlc34a2 (Mus musculus)6480464Fenretinide results in increased expression of SLC34A2 mRNACTDPMID:28973697
Slc34a2Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of SLC34A2 mRNACTDPMID:31881176
Slc34a2Ratall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of SLC34A2 mRNACTDPMID:20488242
Slc34a2Ratall-trans-retinoic acid multiple interactionsISOSlc34a2 (Mus musculus)6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of SLC34A2 mRNACTDPMID:36189433
Slc34a2Ratall-trans-retinoic acid affects expressionISOSLC34A2 (Homo sapiens)6480464Tretinoin affects the expression of SLC34A2 mRNACTDPMID:31600526
Slc34a2Ratalpha-Zearalanol multiple interactionsEXP 6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of SLC34A2 mRNACTDPMID:35163327
Slc34a2Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of SLC34A2 mRNACTDPMID:16483693
Slc34a2Rataristolochic acid A decreases expressionISOSLC34A2 (Homo sapiens)6480464aristolochic acid I results in decreased expression of SLC34A2 mRNACTDPMID:33212167
Slc34a2Ratarsane increases transportISOSLC34A2 (Homo sapiens)6480464SLC34A2 protein results in increased transport of ArsenicCTDPMID:22214486
Slc34a2Ratarsenic atom increases transportISOSLC34A2 (Homo sapiens)6480464SLC34A2 protein results in increased transport of ArsenicCTDPMID:22214486

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Biological Process
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Original Reference(s)
Slc34a2Ratin utero embryonic development acts_upstream_of_or_withinIEAUniProtKB:Q9DBP0 and ensembl:ENSMUSP000000923801600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratin utero embryonic development acts_upstream_of_or_withinISOSlc34a2 (Mus musculus)1624291MGI:3841013 PMID:19233126RGDPMID:19233126
Slc34a2Ratintracellular phosphate ion homeostasis involved_inIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratintracellular phosphate ion homeostasis involved_inIBAPANTHER:PTN000000493 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc34a2Ratintracellular phosphate ion homeostasis involved_inISOSLC34A2 (Homo sapiens)1624291 PMID:10610722RGDPMID:10610722
Slc34a2Ratmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Slc34a2Ratphosphate ion transport involved_inISOSLC34A2 (Homo sapiens)1624291 PMID:10329428 more ...RGDPMID:10329428 more ...
Slc34a2Ratphosphate ion transport involved_inIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratphosphate ion transport acts_upstream_of_or_withinISOSlc34a2 (Mus musculus)1624291MGI:97999 PMID:12773415 and PMID:9826740RGDPMID:12773415 and PMID:9826740
Slc34a2Ratphosphate ion transport acts_upstream_of_or_withinIEAUniProtKB:Q9DBP0 and ensembl:ENSMUSP000000923801600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratresponse to estradiol  IEP 2311315 RGD 
Slc34a2Ratresponse to estrogen involved_inIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratresponse to estrogen involved_inISOSLC34A2 (Homo sapiens)1624291 PMID:12893629RGDPMID:12893629
Slc34a2Ratresponse to fructose  IEP 2311313 RGD 
Slc34a2Ratsodium ion transmembrane transport involved_inIEAGO:00054361600115GO_REF:0000108GOCGO_REF:0000108
Slc34a2Ratsodium ion transport involved_inIEAUniProtKB-KW:KW-07391600115GO_REF:0000043UniProtGO_REF:0000043
Slc34a2Ratsodium-dependent phosphate transport  IMP 2311312 RGD 
Slc34a2Ratsodium-dependent phosphate transport involved_inIBAPANTHER:PTN000000493 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc34a2Ratsodium-dependent phosphate transport involved_inIEAInterPro:IPR0038411600115GO_REF:0000002InterProGO_REF:0000002
Slc34a2Rattransmembrane transport involved_inIEAGO:00152931600115GO_REF:0000108GOCGO_REF:0000108
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Cellular Component
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Original Reference(s)
Slc34a2Ratapical plasma membrane  IDA 2311314 RGD 
Slc34a2Ratapical plasma membrane is_active_inIBAMGI:1342284 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc34a2Ratapical plasma membrane located_inIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratapical plasma membrane located_inIEAUniProtKB-SubCell:SL-00151600115GO_REF:0000044UniProtGO_REF:0000044
Slc34a2Ratapical plasma membrane located_inIEAUniProtKB:Q9DBP0 and ensembl:ENSMUSP000000923801600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratapical plasma membrane located_inISOSLC34A2 (Homo sapiens)1624291 PMID:15970207RGDPMID:15970207
Slc34a2Ratapical plasma membrane located_inIEAARBA:ARBA000264131600115GO_REF:0000117UniProtGO_REF:0000117
Slc34a2Ratapical plasma membrane located_inISOSlc34a2 (Mus musculus)1624291 PMID:11706048 more ...RGDPMID:11706048 more ...
Slc34a2Ratapical plasma membrane located_inIDA 2311315PMID:12893629UniProt 
Slc34a2Ratapical plasma membrane  IDA 7207458 RGD 
Slc34a2Ratbrush border located_inIEAUniProtKB:Q9DBP0 and ensembl:ENSMUSP000000923801600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratbrush border is_active_inIBAMGI:1342284 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc34a2Ratbrush border located_inISOSlc34a2 (Mus musculus)1624291 PMID:12773415RGDPMID:12773415
Slc34a2Ratbrush border membrane  IDA 2311312 RGD 
Slc34a2Ratmembrane located_inISOSLC34A2 (Homo sapiens)1624291 PMID:10329428RGDPMID:10329428
Slc34a2Ratmembrane located_inIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratmembrane located_inIEAInterPro:IPR0038411600115GO_REF:0000002InterProGO_REF:0000002
Slc34a2Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc34a2Ratmicrovillus membrane  IDA 7207458 RGD 
Slc34a2Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
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Original Reference(s)
Slc34a2Ratphosphate ion binding enablesIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratphosphate ion binding enablesISOSLC34A2 (Homo sapiens)1624291 PMID:12488042RGDPMID:12488042
Slc34a2Ratprotein binding enablesISOSLC34A2 (Homo sapiens) and UniProtKB:O95436-21624291UniProtKB:A5PKU2 more ...RGDPMID:32296183
Slc34a2Ratprotein domain specific binding  IPINherf1 (Rattus norvegicus)7207458 RGD 
Slc34a2Ratsodium ion binding enablesIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratsodium ion binding enablesISOSLC34A2 (Homo sapiens)1624291 PMID:12488042RGDPMID:12488042
Slc34a2Ratsodium:phosphate symporter activity enablesIDA 2311315PMID:12893629UniProt 
Slc34a2Ratsodium:phosphate symporter activity enablesIEAInterPro:IPR0038411600115GO_REF:0000002InterProGO_REF:0000002
Slc34a2Ratsodium:phosphate symporter activity enablesIEAUniProtKB:Q9DBP0 and ensembl:ENSMUSP000000923801600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratsodium:phosphate symporter activity enablesIBAMGI:1342284 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc34a2Ratsodium:phosphate symporter activity enablesIEAUniProtKB:O95436 and ensembl:ENSP000003714831600115GO_REF:0000107EnsemblGO_REF:0000107
Slc34a2Ratsodium:phosphate symporter activity enablesISOSlc34a2 (Mus musculus)1624291 PMID:15701623 more ...RGDPMID:15701623 more ...
Slc34a2Ratsodium:phosphate symporter activity enablesIEAARBA:ARBA000341571600115GO_REF:0000117UniProtGO_REF:0000117
Slc34a2Ratsodium:phosphate symporter activity enablesISOSLC34A2 (Homo sapiens)1624291 PMID:10329428 more ...RGDPMID:10329428 more ...
Slc34a2Ratsymporter activity enablesIEAUniProtKB-KW:KW-07691600115GO_REF:0000043UniProtGO_REF:0000043
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RGD Manual Annotations


  
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Original Reference(s)
Slc34a2Ratphosphate transport pathway  ISOSLC34A2 (Homo sapiens)7207819 RGD 

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#
Reference Title
Reference Citation
1. Identification and localization of sodium-phosphate cotransporters in hepatocytes and cholangiocytes of rat liver. Frei P, etal., Am J Physiol Gastrointest Liver Physiol. 2005 Apr;288(4):G771-8. Epub 2004 Nov 24.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. NHE3 regulatory factor 1 (NHERF1) modulates intestinal sodium-dependent phosphate transporter (NaPi-2b) expression in apical microvilli. Giral H, etal., J Biol Chem. 2012 Oct 12;287(42):35047-56. doi: 10.1074/jbc.M112.392415. Epub 2012 Aug 17.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Isolation and localization of type IIb Na/Pi cotransporter in the developing rat lung. Hashimoto M, etal., Am J Pathol 2000 Jul;157(1):21-7.
6. Luminal fructose inhibits rat intestinal sodium-phosphate cotransporter gene expression and phosphate uptake. Kirchner S, etal., Am J Clin Nutr. 2008 Apr;87(4):1028-38.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Phosphate handling: new genes, new molecules. Prie D, etal., Horm Res Paediatr. 2011;76 Suppl 1:71-5. doi: 10.1159/000329175. Epub 2011 Jul 21.
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15. Role of rat sodium/phosphate cotransporters in the cell membrane transport of arsenate. Villa-Bellosta R and Sorribas V, Toxicol Appl Pharmacol. 2008 Oct 1;232(1):125-34. Epub 2008 Jun 10.
16. Regulation of intestinal NaPi-IIb cotransporter gene expression by estrogen. Xu H, etal., Am J Physiol Gastrointest Liver Physiol. 2003 Dec;285(6):G1317-24. Epub 2003 Jul 31.
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PMID:9826740   PMID:10329428   PMID:10610722   PMID:11706048   PMID:12121891   PMID:12488042   PMID:12773415   PMID:15489334   PMID:15970207   PMID:17310099   PMID:17574207   PMID:19190083  
PMID:19233126   PMID:19806400   PMID:22235299   PMID:28179233   PMID:33846411  



Slc34a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,123,313 - 62,153,020 (-)NCBIGRCr8
mRatBN7.21457,910,931 - 57,930,236 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1457,910,480 - 57,930,436 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1462,312,729 - 62,331,995 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01463,631,450 - 63,650,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01460,028,211 - 60,047,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,257,211 - 60,276,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,256,712 - 60,276,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,375,980 - 60,395,841 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,660,006 - 62,679,311 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11462,661,945 - 62,674,066 (-)NCBI
Celera1457,011,613 - 57,030,915 (-)NCBICelera
Cytogenetic Map14q11NCBI
SLC34A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38425,655,851 - 25,678,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl425,648,011 - 25,678,748 (+)EnsemblGRCh38hg38GRCh38
GRCh37425,657,473 - 25,680,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36425,266,533 - 25,289,468 (+)NCBINCBI36Build 36hg18NCBI36
Build 34425,333,741 - 25,354,773NCBI
Celera426,105,505 - 26,128,442 (+)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef424,995,885 - 25,018,820 (+)NCBIHuRef
CHM1_1425,657,246 - 25,680,195 (+)NCBICHM1_1
T2T-CHM13v2.0425,637,821 - 25,660,720 (+)NCBIT2T-CHM13v2.0
Slc34a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39553,206,695 - 53,229,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl553,195,423 - 53,229,006 (+)EnsemblGRCm39 Ensembl
GRCm38553,049,353 - 53,071,664 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl553,038,081 - 53,071,664 (+)EnsemblGRCm38mm10GRCm38
MGSCv37553,440,592 - 53,462,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36553,337,630 - 53,359,912 (+)NCBIMGSCv36mm8
Celera550,429,966 - 50,452,261 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map528.92NCBI
Slc34a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544319,452,306 - 19,467,129 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544319,452,373 - 19,467,129 (-)NCBIChiLan1.0ChiLan1.0
SLC34A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2325,904,193 - 25,927,027 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1426,099,982 - 26,122,819 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0420,056,254 - 20,079,012 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1425,336,538 - 25,359,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl425,336,538 - 25,359,381 (+)Ensemblpanpan1.1panPan2
SLC34A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1384,686,505 - 84,717,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl384,686,425 - 84,742,038 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha387,197,404 - 87,228,556 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0385,655,124 - 85,686,281 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl385,655,645 - 85,714,088 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1384,777,180 - 84,808,314 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0384,897,108 - 84,928,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,280,888 - 85,312,032 (-)NCBIUU_Cfam_GSD_1.0
Slc34a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528550,252,670 - 50,273,639 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364773,956,061 - 3,966,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364773,954,377 - 3,975,259 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC34A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl819,481,198 - 19,509,666 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1819,481,127 - 19,507,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2819,819,341 - 19,847,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC34A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12724,674,419 - 24,698,844 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2724,674,584 - 24,690,984 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604771,188,809 - 71,212,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc34a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247556,830,056 - 6,842,910 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247556,829,197 - 6,849,898 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc34a2
68 total Variants

Predicted Target Of
Summary Value
Count of predictions:181
Count of miRNA genes:138
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000048509
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat

1 to 10 of 20 rows
RH127919  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21457,910,622 - 57,910,810 (+)MAPPERmRatBN7.2
Rnor_6.01460,256,903 - 60,257,090NCBIRnor6.0
Rnor_5.01460,376,126 - 60,376,313UniSTSRnor5.0
RGSC_v3.41462,659,698 - 62,659,885UniSTSRGSC3.4
Celera1457,011,305 - 57,011,492UniSTS
Cytogenetic Map14q11UniSTS
RH133883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21457,911,020 - 57,911,235 (+)MAPPERmRatBN7.2
Rnor_6.01460,257,301 - 60,257,515NCBIRnor6.0
Rnor_5.01460,376,524 - 60,376,738UniSTSRnor5.0
RGSC_v3.41462,660,096 - 62,660,310UniSTSRGSC3.4
Celera1457,011,703 - 57,011,917UniSTS
Cytogenetic Map14q11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 20 57 86 90 59 25 59 6 175 58 41 41 58 31



Ensembl Acc Id: ENSRNOT00000048509   ⟹   ENSRNOP00000050889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,910,931 - 57,930,436 (-)Ensembl
Rnor_6.0 Ensembl1460,256,712 - 60,276,794 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111481   ⟹   ENSRNOP00000083766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,910,480 - 57,930,244 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117888   ⟹   ENSRNOP00000096758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,910,931 - 57,930,436 (-)Ensembl
RefSeq Acc Id: NM_053380   ⟹   NP_445832
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81462,123,767 - 62,143,072 (-)NCBI
mRatBN7.21457,910,931 - 57,930,236 (-)NCBI
Rnor_6.01460,257,211 - 60,276,516 (-)NCBI
Rnor_5.01460,375,980 - 60,395,841 (-)NCBI
RGSC_v3.41462,660,006 - 62,679,311 (-)RGD
Celera1457,011,613 - 57,030,915 (-)RGD
Sequence:
RefSeq Acc Id: XM_063273681   ⟹   XP_063129751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81462,123,313 - 62,153,020 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_445832 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129751 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF76291 (Get FASTA)   NCBI Sequence Viewer  
  AAH70898 (Get FASTA)   NCBI Sequence Viewer  
  AAL55704 (Get FASTA)   NCBI Sequence Viewer  
  EDL99876 (Get FASTA)   NCBI Sequence Viewer  
  EDL99877 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000050889
  ENSRNOP00000083766
GenBank Protein Q9JJ09 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_445832   ⟸   NM_053380
- UniProtKB: Q8VI55 (UniProtKB/Swiss-Prot),   Q9JJ09 (UniProtKB/Swiss-Prot),   A6IJG4 (UniProtKB/TrEMBL),   A0A8I5ZXN1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000050889   ⟸   ENSRNOT00000048509
Ensembl Acc Id: ENSRNOP00000083766   ⟸   ENSRNOT00000111481
Ensembl Acc Id: ENSRNOP00000096758   ⟸   ENSRNOT00000117888
RefSeq Acc Id: XP_063129751   ⟸   XM_063273681
- Peptide Label: isoform X1
- UniProtKB: Q9JJ09 (UniProtKB/Swiss-Prot),   Q8VI55 (UniProtKB/Swiss-Prot),   A6IJG4 (UniProtKB/TrEMBL),   A0A8I5ZXN1 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJ09-F1-model_v2 AlphaFold Q9JJ09 1-695 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-15607 BioCyc
Ensembl Genes ENSRNOG00000004626 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000048509 ENTREZGENE
  ENSRNOT00000111481 ENTREZGENE
IMAGE_CLONE IMAGE:7099656 IMAGE-MGC_LOAD
InterPro Na/Pi_transpt UniProtKB/Swiss-Prot
KEGG Report rno:84395 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91585 IMAGE-MGC_LOAD
NCBI Gene 84395 ENTREZGENE
PANTHER PTHR10010 UniProtKB/Swiss-Prot
  PTHR10010:SF23 UniProtKB/Swiss-Prot
Pfam Na_Pi_cotrans UniProtKB/Swiss-Prot
PhenoGen Slc34a2 PhenoGen
RatGTEx ENSRNOG00000004626 RatGTEx
UniProt A0A0H2UHZ0_RAT UniProtKB/TrEMBL
  A0A8I5ZXN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AQW9_RAT UniProtKB/TrEMBL
  A6IJG4 ENTREZGENE, UniProtKB/TrEMBL
  NPT2B_RAT UniProtKB/Swiss-Prot
  Q8VI55 ENTREZGENE
  Q9JJ09 ENTREZGENE
UniProt Secondary Q8VI55 UniProtKB/Swiss-Prot
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc34a2  solute carrier family 34 member 2  Slc34a2  solute carrier family 34 (type II sodium/phosphate cotransporter), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-11-26 Slc34a2  solute carrier family 34 (type II sodium/phosphate cotransporter), member 2  Slc34a2  solute carrier family 34 (type II sodium/phosphate contransporter), member 2  Name changed 629549 APPROVED
2013-08-02 Slc34a2  solute carrier family 34 (type II sodium/phosphate contransporter), member 2  Slc34a2  solute carrier family 34 (sodium phosphate), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Slc34a2  solute carrier family 34 (sodium phosphate), member 2      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Slc34a2  solute carrier family 34 (sodium phosphate), member 2      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in type II alveolar cells of the developing lung 634065