Gtf2ird1 (GTF2I repeat domain containing 1)

Gene: Gtf2ird1 (GTF2I repeat domain containing 1) Rattus norvegicus

Analyze

Symbol:

Gtf2ird1

Name:

GTF2I repeat domain containing 1

RGD ID:

620856

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription and transition between slow and fast fiber. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Orthologous to human GTF2IRD1 (GTF2I repeat domain containing 1); INTERACTS WITH (+)-schisandrin B; 3H-1,2-dithiole-3-thione; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

general transcription factor II I repeat domain-containing 1; general transcription factor II-I repeat domain-containing protein 1; general transcription factor II-I repeat domain-containing protein 1-like; Gtf3; LOC100912262

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Is Marker For:

Strains: DA.ACI-(Gtf2ird1-D12Rat8)/Nsi

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI		GRCr8
mRatBN7.2	12	22,254,113 - 22,361,052 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	23,397,196 - 23,503,731 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	24,008,287 - 24,114,790 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	23,075,147 - 23,180,850 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	25,264,052 - 25,370,947 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	25,264,192 - 25,371,001 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	12	29,012,695 - 29,080,011 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	27,273,535 - 27,380,438 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	23,319,373 - 23,426,094 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	24,058,959 - 24,124,035 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

Childhood Schizophrenia (ISO)

Cognitive Dysfunction (ISO)

Craniofacial Abnormalities (ISO)

genetic disease (ISO)

intestinal volvulus (ISO)

Neurodevelopmental Disorders (ISO)

pleomorphic xanthoastrocytoma (ISO)

schizophrenia (ISO)

Volvulus Of Midgut (ISO)

Williams-Beuren syndrome (ISO,ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dibromoethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

2-nitrotoluene (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amosite asbestos (ISO)

amphetamine (EXP)

atrazine (EXP)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

epoxiconazole (ISO)

flutamide (EXP)

folic acid (ISO)

geraniol (ISO)

ketamine (EXP)

methapyrilene (ISO)

methimazole (EXP)

N-methylformamide (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

rotenone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tamoxifen (ISO)

tanespimycin (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (ISO)

transcription by RNA polymerase II (IEA)

transition between slow and fast fiber (ISO)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

DNA-binding transcription factor activity (IBA,ISO,NAS)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of GTF2IRD1, a putative transcription factor within the Williams-Beuren syndrome deletion at 7q11.23.	Franke Y, etal., Cytogenet Cell Genet 1999;86(3-4):296-304.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	Positional identification of Ncf1 as a gene that regulates arthritis severity in rats.	Olofsson P, etal., Nat Genet 2003 Jan;33(1):25-32.
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10861001	PMID:19109438	PMID:22899722	PMID:32325114

Genomics

Comparative Map Data

Gtf2ird1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI		GRCr8
mRatBN7.2	12	22,254,113 - 22,361,052 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	23,397,196 - 23,503,731 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	24,008,287 - 24,114,790 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	23,075,147 - 23,180,850 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	25,264,052 - 25,370,947 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	25,264,192 - 25,371,001 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	12	29,012,695 - 29,080,011 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	27,273,535 - 27,380,438 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	23,319,373 - 23,426,094 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	24,058,959 - 24,124,035 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

GTF2IRD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	74,453,906 - 74,602,605 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	74,453,790 - 74,602,605 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	73,868,236 - 74,016,931 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	73,506,056 - 73,654,853 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	73,312,770 - 73,461,561	NCBI
Celera	7	69,347,333 - 69,496,125 (+)	NCBI		Celera
Cytogenetic Map	7	q11.23	NCBI
HuRef	7	69,747,281 - 69,895,926 (+)	NCBI		HuRef
CHM1_1	7	74,013,188 - 74,162,021 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	75,656,184 - 75,805,371 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	73,201,192 - 73,350,003 (+)	NCBI

Gtf2ird1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	134,386,515 - 134,485,628 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	134,386,510 - 134,485,570 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	134,357,661 - 134,456,867 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	134,357,656 - 134,456,716 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	134,833,531 - 134,932,581 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	134,642,288 - 134,741,317 (-)	NCBI		MGSCv36	mm8
Celera	5	131,365,373 - 131,464,432 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	74.55	NCBI

Gtf2ird1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	13,492,496 - 13,564,826 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	13,494,644 - 13,564,826 (-)	NCBI	ChiLan1.0	ChiLan1.0

GTF2IRD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	90,296,816 - 90,446,491 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	138,561,445 - 138,711,123 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	7	81,599,471 - 81,749,108 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	81,653,515 - 81,748,951 (+)	Ensembl	panpan1.1		panPan2

GTF2IRD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	5,887,757 - 5,997,627 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	5,886,931 - 5,963,873 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	7,588,773 - 7,699,430 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	5,704,043 - 5,814,869 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	5,704,056 - 5,814,824 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	5,695,818 - 5,771,513 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	5,643,114 - 5,754,077 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	5,806,109 - 5,917,143 (-)	NCBI		UU_Cfam_GSD_1.0

Gtf2ird1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	130,553,365 - 130,604,840 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	3,435,072 - 3,483,246 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	3,435,039 - 3,483,202 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GTF2IRD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	11,538,314 - 11,654,770 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	11,538,183 - 11,654,795 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	11,271,681 - 11,374,731 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GTF2IRD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	8,512,006 - 8,583,110 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666070	7,941,696 - 8,087,441 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gtf2ird1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	13,579,292 - 13,652,402 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	13,581,752 - 13,653,148 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gtf2ird1
880 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	14
Count of miRNA genes:	14
Interacting mature miRNAs:	14
Transcripts:	ENSRNOT00000002010
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	19610870	24139202	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	19610870	40218516	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610889	35682913	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	19835789	38193007	Rat
631521	Pia12	Pristane induced arthritis QTL 12	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	20259417	23672083	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat

Markers in Region

D12Got46

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	22,297,209 - 22,297,425 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,014,147 - 29,014,362	NCBI	Rnor6.0
Rnor_6.0	12	25,307,118 - 25,307,333	NCBI	Rnor6.0
Rnor_5.0	12	30,964,665 - 30,964,880	UniSTS	Rnor5.0
Rnor_5.0	12	27,316,608 - 27,316,823	UniSTS	Rnor5.0
RGSC_v3.4	12	23,362,298 - 23,362,514	RGD	RGSC3.4
RGSC_v3.4	12	23,362,299 - 23,362,514	UniSTS	RGSC3.4
RGSC_v3.1	12	23,225,514 - 23,225,729	RGD
Celera	12	24,060,262 - 24,060,477	UniSTS
RH 3.4 Map	12	351.3	UniSTS
RH 3.4 Map	12	351.3	RGD
RH 2.0 Map	12	238.9	RGD
Cytogenetic Map	12	q12	UniSTS

BE097301

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	22,349,359 - 22,349,512 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,066,289 - 29,066,441	NCBI	Rnor6.0
Rnor_6.0	12	25,359,262 - 25,359,414	NCBI	Rnor6.0
Rnor_5.0	12	31,016,807 - 31,016,959	UniSTS	Rnor5.0
Rnor_5.0	12	27,368,753 - 27,368,905	UniSTS	Rnor5.0
RGSC_v3.4	12	23,414,445 - 23,414,597	UniSTS	RGSC3.4
Celera	12	24,112,397 - 24,112,549	UniSTS
RH 3.4 Map	12	347.6	UniSTS
Cytogenetic Map	12	q12	UniSTS

AW535181

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	22,311,748 - 22,311,931 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	29,028,686 - 29,028,868	NCBI	Rnor6.0
Rnor_6.0	12	25,321,657 - 25,321,839	NCBI	Rnor6.0
Rnor_5.0	12	30,979,204 - 30,979,386	UniSTS	Rnor5.0
Rnor_5.0	12	27,331,147 - 27,331,329	UniSTS	Rnor5.0
RGSC_v3.4	12	23,376,838 - 23,377,020	UniSTS	RGSC3.4
Celera	12	24,074,801 - 24,074,983	UniSTS
RH 3.4 Map	12	349.6	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH140259

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	22,278,724 - 22,278,923 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,995,664 - 28,995,862	NCBI	Rnor6.0
Rnor_6.0	12	25,288,635 - 25,288,833	NCBI	Rnor6.0
Rnor_5.0	12	30,946,182 - 30,946,380	UniSTS	Rnor5.0
Rnor_5.0	12	27,298,125 - 27,298,323	UniSTS	Rnor5.0
RGSC_v3.4	12	23,343,816 - 23,344,014	UniSTS	RGSC3.4
Celera	12	24,041,796 - 24,041,994	UniSTS
RH 3.4 Map	12	349.1	UniSTS
Cytogenetic Map	12	q12	UniSTS

Related Rat Strains

The following Strains have been annotated to Gtf2ird1

DA.ACI-(Gtf2ird1-D12Rat8)/Nsi

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low	6	60	77	51	18	51	1	3	139	64	72	17	1
Below cutoff		26	37	31	20	31	13	16	8	6	9	5	13

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001001504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC087722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC094811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF547388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF547389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY115565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ294702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ294703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ294704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ294705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000002006 ⟹ ENSRNOP00000002006

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl
Rnor_6.0 Ensembl	12	29,012,852 - 29,079,729 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000002010 ⟹ ENSRNOP00000002010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl
Rnor_6.0 Ensembl	12	25,305,823 - 25,370,780 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079392 ⟹ ENSRNOP00000075217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl
Rnor_6.0 Ensembl	12	25,264,192 - 25,370,911 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085696 ⟹ ENSRNOP00000073591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,360,103 (+)	Ensembl
Rnor_6.0 Ensembl	12	29,012,695 - 29,080,011 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087656 ⟹ ENSRNOP00000069637

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl
Rnor_6.0 Ensembl	12	25,264,400 - 25,371,001 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101585 ⟹ ENSRNOP00000079734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,360,103 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109247 ⟹ ENSRNOP00000090423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,360,103 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110226 ⟹ ENSRNOP00000085931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,360,103 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112342 ⟹ ENSRNOP00000093457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	22,254,221 - 22,361,040 (+)	Ensembl

RefSeq Acc Id:

NM_001001504 ⟹ NP_001001504

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,746 - 27,997,466 (+)	NCBI
mRatBN7.2	12	22,254,282 - 22,361,012 (+)	NCBI
Rnor_6.0	12	25,264,192 - 25,370,911 (+)	NCBI
Rnor_5.0	12	27,273,535 - 27,380,438 (+)	NCBI
RGSC_v3.4	12	23,319,373 - 23,426,094 (+)	RGD
Celera	12	24,058,959 - 24,124,035 (+)	RGD

Sequence:

show sequence

GCCCTCCTTCCCTCCCTCCCTCTACTGATCCTGTCCCCCACTCCCGGATTATTAACTCAGCAAC
CAGAGGCGACTGGATCTACCGAGTCCTGGCCACCGGGCCCGGGCCGGGGCGCCCGGAGCGCTTG
GGGATCCTGCAAGGTGACCATGGCCTTGCTGGGGAAGCATTGTGACATCCCCACCAACGGCTGT
GGGTCTGAGCGCTGGAACTCCACCTTTGCCCGCAAGGACGAGCTCATCAACAGTCTGGTGTCTG
CCTTAGACTCCATGTGCTCAGCGCTCTCCAAGCTGAACACAGAGGTGGCCTGCGTGGCGGTACA
CAATGAGAGCGTCTTCGTGATGGGCACCGAGAAGGGAAGGGTGTTTTTGAATACTCGGAAGGAG
CTACAGTCAGACTTCCTCAGGTTCTGCCGGGGACCCCTGTGGAACGATCCAGAAGCAGGACACC
CTAAAAAGGTGCAGCGCTGCGAAGGTGGTGGCCGGAGCATCCCGCGGTCCTCTCTGGAGCAGTG
CTCGGATGTGTACCTGCTGCAGAAGATGGTAGAGGAAGTGTTTGATGTTCTTTATAGTGAGGCT
ATGGGCAGGGCCACCGTGGTACCTTTGCCCTATGAGAGGCTGCTCAGGGAGCCGGGGCTACTGG
CGGTGCAAGGGCTGCCCGAGGGCCTGGCCTTCCGGAGACCAGCAGAATATGACCCCAAGGCACT
CATGGCCATTTTGGAGCATAGTCACCGAATTCGGTTTAAGCTCAGGAGGCCTCCTGATGACGGT
GGGCAGGACACAAAGGCGCTGGTGGAGATGAACGGTATCTCTCTGCTACCCAAGGGGTCCCGAG
ACTGTGGTCTGCATGGCCAGGCCTCCAAGGTCTCTCCCCAAGACCTGACCCCCACCGCCACCCC
ATCCTCCATGGCCAACTTCCTGTACAGCACTTCGATGCCCAACCACACCATCCGGGAACTCAAG
CAGGAGGTGCCAACCTGCCCGTTGACCCCCAGCGACCTGGGCTTGGGCTGGCCTGTGCCTGAGC
CCCATGTCCCCAGCACCCAAGATTTCTCTGATTGCTGTGGACAGGCGCCTGCAGGGCCTGCTGG
GCCTCTCATCCAGAATGTCCACGCTTCCAAGCGTATCCTCTTCTCCATCGTCCACGACAAGTCA
GAGAAGTGGGATCCCTTCATCAAGGAAATGGAGGACATCAACACCCTGCGGGAGTGCGTGCAGA
TTCTGTTTAACAGCAGATACGCGGAAGCCCTGGGCCTGGACCATATGGTTCCTGTGCCCTACAG
GAAGATTGCCTGTGACCCTGAGGCTGTGGAGATTGTGGGTATCCCAGACAAGATCCCCTTCAAG
CGGCCCTGCACTTATGGAGTGCCGAAGCTGAAGAGAATTCTGGAGGAGCGGCACAGCATTCACT
TCATTATCAAGAGGATGTTCGATGAGCGCATTTTCACAGGGAACAAGTTTACCAAAGACCCCAT
GAAGCTGGAGCCAGCTAGCCCACCAGAAGACACTGCCACAGAAGTCTGTAGGGACAGCATGCTG
GACCTGGCTGGGACTGCTTGGTCAGACATGAGCAGCGTCTCTGAAGACTGTGGGCCAGGAACCT
CAGGAGAGATAGGAATGTTGAGGCCTATCAAAATCGAGCCCGAGGAGCTGGACATTATTCAGGT
TACTGTCTCAGATCCTTCACCTACCTCTGAGGAGATGACTGACTCACTACCTGGGCATCTACCC
TCAGAAGATTCCGGTTATGGGATGGAAATGCCGGCTGACAAAGGCCCCAGTGAGGAACCGTGGC
AAGAAGAGAGGCCGGCAGAAGAGAGCCCTGGTGATGTGATCAGGCCCCTCCGGAAGCAGGTGGA
AATGCTGTTCAACACAAAATATGCCAAAGCCATTGGTACCTCAGAGCCAGTCAAGGTGCCCTAC
TCCAAGTTCCTGATGCACCCGGAGGAGCTCTTCGTACTGGGACTGCCTGAAGGCATCTCTCTTC
GAAGACCCAACTGCTTTGGGATTGCCAAGCTGAGGAAGATTCTGGAAGCCAGCAACAGTATCCA
GTTTGTCATTAAGAGACCCGAACTACTCACTGACGGTGTCAAAGAACCTGTTATGGACACTCAA
GAGAGGGACTCCTGGGACCCTCTTGTGGACGAGACCCCGAAGAGACAGGGCCTTCAAGAAAATT
ACAACACCAGACTCTCTCGGATCGACATCGCCAACACGCTTAGGGAACAAGTCCAAGACCTGTT
TAACAAGAAATACGGTGAAGCTCTGGGCATCAAATACCCAGTGCAGGTGCCCTACAAGCGAATC
AAAAGCAATCCAGGCTCGGTAATCATCGAAGGCCTGCCCCCCGGGATCCCATTCCGCAAGCCCT
GCACCTTTGGCTCCCAGAACCTGGAAAGGATCCTCTCTGTGGCTGACAAGATCAAGTTCACCGT
CACCAGGCCATTTCAAGGACTCATCCCAAAGCCTGATGAGGATGATGCCAACAGACTGGGGGAG
AAGGTGATCCTCCGAGAGCAGGTGAAGGAGCTCTTCAATGAGAAATACGGTGAGGCCCTGGGAC
TGAATCGGCCTGTGCTGGTCCCGTACAAGCTGATCCGGGACAGCCCGGATGCCGTGGAGGTGAA
AGGCCTCCCAGATGACATCCCCTTCCGGAACCCCAACACCTACGACATCCATCGGCTGGAGAAG
ATCCTGAAGGCCAGAGACCACGTACGGATGGTTATCATCAACCAGCTCCAACCTTTTGGGGATG
TCTGCAACAATGCCAAGGTGCCAGCCAAAGACAACATTCCCAAGCGCAAGAGAAAGCGGGTCTC
TGAAGGCAACTCAGTCTCCTCCTCTTCCTCTTCTTCATCCTCCTCGTCCTCTAATCCAGAGTCT
GTGGCGTCCACCAACCAGATCTCCCTCGTGCAGTGGCCAGTGTACATGGTGGACTATTCCGGAC
TAAACGTGCAGCTTCCAGGCCCCCTTGATTATTAGACCTCAGAGCCGAATCAGGACCTCAACTC
AAAAGACTAAAGGAAAATGTAATTTATGTACAAAGTATATTCGGATATGTATCGATGCCTTTTA
GTTTTTCCAATGATTTTTACACTATATTCCTGCCGCCA

hide sequence

RefSeq Acc Id:

XM_006249107 ⟹ XP_006249169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,254,227 - 22,361,045 (+)	NCBI
Rnor_6.0	12	25,264,060 - 25,370,947 (+)	NCBI
Rnor_5.0	12	27,273,535 - 27,380,438 (+)	NCBI

Sequence:

show sequence

TACAGAACAAAGAGAGAACCTCCCAGAGCCCGGGCTCGGCTTCGCGCTCGCTCTGCGCCCCGCC
CTCCGCCGCAGCCCGCGCCGGGGGTGGGGGCCCCGCGCAGCCCCCGGCCGGCCGCCCGCACCGC
GTCCGCCCTCCTTCCCTCCCTCCCTCCACTGATCCTGTCCCCCACTCCCGGATTATTAACTCAG
CAACCAGAGGCGACTGGATCTACCGAGTCCTGGCCACCGGGCCCGGGCCGGGGCGCCCGGAGCG
CTTGGGGATCCTGCAAGGTGACCATGGCCTTGCTGGGGAAGCATTGTGACATCCCCACCAACGG
CTGTGGGTCTGAGCGCTGGAACTCCACCTTTGCCCGCAAGGACGAGCTCATCAACAGTCTGGTG
TCTGCCTTAGACTCCATGTGCTCAGCGCTCTCCAAGCTGAACACAGAGGTGGCCTGCGTGGCGG
TACACAATGAGAGCGTCTTCGTGATGGGCACCGAGAAGGGAAGGGTGTTTTTGAATACTCGGAA
GGAGCTACAGTCAGACTTCCTCAGGTTCTGCCGGGGACCCCTGTGGAACGATCCAGAAGCAGGA
CACCCTAAAAAGGTGCAGCGCTGCGAAGGTGGTGGCCGGAGCATCCCGCGGTCCTCTCTGGAGC
AGTGCTCGGATGTGTACCTGCTGCAGAAGATGGTAGAGGAAGTGTTTGATGTTCTTTATAGTGA
GGCTATGGGCAGGGCCACCGTGGTACCTTTGCCCTATGAGAGGCTGCTCAGGGAGCCGGGGCTA
CTGGCGGTGCAGGGGCTGCCCGAGGGCCTGGCCTTCCGGAGACCAGCAGAATATGACCCCAAGG
CACTCATGGCCATTTTGGAGCATAGTCACCGAATTCGGTTTAAGCTCAGGAGGCCTCCTGATGA
CGGTGGGCAGGACACAAAGGCGCTGGTGGAGATGAACGGTATCTCTCTGCTACCCAAGGGGTCC
CGAGACTGTGGTCTGCATGGCCAGGCCTCCAAGGTCTCTCCCCAAGACCTGACCCCCACCGCCA
CCCCATCCTCCATGGCCAACTTCCTGTACAGCACTTCGATGCCCAACCACACCATCCGGGAACT
CAAGCAGGAGGTGCCAACCTGCCCGTTGACCCCCAGCGACCTGGGCTTGGGCTGGCCTGTGCCT
GAGCCCCATGTCCCCAGCACCCAAGATTTCTCTGATTGCTGTGGACAGGCGCCTGCAGGGCCTG
CTGGGCCTCTCATCCAGAATGTCCACGCTTCCAAGCGTATCCTCTTCTCCATCGTCCACGACAA
GTCAGAGAAGTGGGATCCCTTCATCAAGGAAATGGAGGACATCAACACCCTGCGGGAGTGCGTG
CAGATTCTGTTTAACAGCAGATACGCGGAAGCCCTGGGCCTGGACCATATGGTTCCTGTGCCCT
ACAGGAAGATTGCCTGTGACCCTGAGGCTGTGGAGATTGTGGGTATCCCAGACAAGATCCCCTT
CAAGCGGCCCTGCACTTATGGAGTGCCGAAGCTGAAGAGAATTCTGGAGGAGCGGCACAGCATT
CACTTCATTATCAAGAGGATGTTCGATGAGCGCATTTTCACAGGGAACAAGTTTACCAAAGACC
CCATGAAGCTGGAGCCAGCTAGCCCACCAGAAGACACTGCCACAGAAGTCTGTAGGGACAGCAT
GCTGGACCTGGCTGGGACTGCTTGGTCAGACATGAGCAGCGTCTCTGAAGACTGTGGGCCAGGA
ACCTCAGGAGAGATAGGAATGTTGAGGCCTATCAAAATCGAGCCCGAGGAGCTGGACATTATTC
AGGTTACTGTCTCAGATCCTTCACCTACCTCTGAGGAGATGACTGACTCACTACCTGGGCATCT
ACCCTCAGAAGATTCCGGTTATGGGATGGAAATGCCGGCTGACAAAGGCCCCAGTGAGGAACCG
TGGCAAGAAGAGAGGCCGGCAGAAGAGAGCCCTGGTGATGTGATCAGGCCCCTCCGGAAGCAGG
TGGAAATGCTGTTCAACACAAAATATGCCAAAGCCATTGGTACCTCAGAGCCAGTCAAGGTGCC
CTACTCCAAGTTCCTGATGCACCCAGAGGAGCTCTTCGTACTGGGACTGCCTGAAGGCATCTCT
CTTCGAAGACCCAACTGCTTTGGGATTGCCAAGCTGAGGAAGATTCTGGAAGCCAGCAACAGTA
TCCAGTTTGTCATTAAGAGACCCGAACTACTCACTGACGGTGTCAAAGAACCTGTTATGGACAC
TCAAGAGAGGGACTCCTGGGACCCTCTTGTGGACGAGACCCCGAAGAGACAGGGCCTTCAAGAA
AATTACAACACCAGACTCTCTCGGATCGACATCGCCAACACGCTTAGGGAACAAGTCCAAGACC
TGTTTAACAAGAAATACGGTGAAGCTCTGGGCATCAAATACCCAGTGCAGGTGCCCTACAAGCG
AATCAAAAGCAATCCAGGCTCGGTAATCATCGAAGGCCTGCCCCCCGGGATCCCATTCCGCAAG
CCCTGCACCTTTGGCTCCCAGAACCTGGAAAGGATCCTCTCTGTGGCTGACAAGATCAAGTTCA
CCGTCACCAGGCCATTTCAAGGACTCATCCCAAAGCCTGAAACCAAAATTCTCACTACAGGACA
CGAAGCTGGAAAAACCACCAGACCAAGGAGACCGCAACAAGACAGCTGGCAGCCAGATGAGGAT
GATGCCAACAGACTGGGGGAGAAGGTGATCCTCCGAGAGCAGGTGAAGGAGCTCTTCAATGAGA
AATACGGTGAGGCCCTGGGACTGAATCGGCCTGTGCTGGTCCCGTACAAGCTGATCCGGGACAG
CCCGGATGCCGTGGAGGTGAAAGGCCTCCCAGATGACATCCCCTTCCGGAACCCCAACACCTAC
GACATCCATCGGCTGGAGAAGATCCTGAAGGCCAGAGACCACGTACGGATGGTTATCATCAACC
AGCTCCAACCCTTTACGGAAGTCTGCAATGACCCCAAGGTGCCAGATGAGGACGACTCTAACAA
GCTCGGGAAGAAGGTGATCCTCCGAGAGCAGGTGAAGGAGCTCTTCAATGAGAAATACGGTGAG
GCCCTGGGACTGAATCGGCCTGTGCTGGTCCCGTACAAGCTGATCCGGGACAGCCCGGATGCCG
TGGAGGTGAAAGGCCTCCCAGATGACATCCCCTTCCGGAACCCCAACACCTACGACATCCATCG
GCTGGAGAAGATCCTGAAGGCCAGAGACCACGTACGGATGGTTATCATCAACCAGCTCCAACCT
TTTGGGGATGTCTGCAACAATGCCAAGGTGCCAGCCAAAGACAACATTCCCAAGCGCAAGAGAA
AGCGGGTCTCTGAAGGCAACTCAGTCTCCTCCTCTTCCTCTTCTTCATCCTCCTCGTCCTCTAA
TCCAGAGTCTGTGGCGTCCACCAACCAGATCTCCCTCGTGCAGTGGCCAGTGTACATGGTGGAC
TATTCCGGACTAAACGTGCAGCTTCCAGGCCCCCTTGATTATTAGACCTCAGAGCCGAATCAGG
ACCTCAACTCAAAAGACTAAAGGAAAATGTAATTTATGTACAAAGTATATTCGGATATGTATCG
ATGCCTTTTAGTTTTTCCAATGATTTTTACACTATATTCCTGCCGCCAAGGCCTTTTTAAATAA
GTAAAGAAAACGAAAAAGAA

hide sequence

RefSeq Acc Id:

XM_039089074 ⟹ XP_038945002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,254,113 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089075 ⟹ XP_038945003

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,013 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,254,564 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089076 ⟹ XP_038945004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,917,781 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,282,837 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089077 ⟹ XP_038945005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,920,547 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,284,086 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089079 ⟹ XP_038945007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,295,915 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089086 ⟹ XP_038945014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,295,915 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089093 ⟹ XP_038945021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,938,763 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,302,301 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_039089094 ⟹ XP_038945022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,945,008 - 27,997,506 (+)	NCBI
mRatBN7.2	12	22,308,546 - 22,361,052 (+)	NCBI

RefSeq Acc Id:

XM_063271047 ⟹ XP_063127117

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,004 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271048 ⟹ XP_063127118

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271049 ⟹ XP_063127119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271050 ⟹ XP_063127120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271051 ⟹ XP_063127121

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,018 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271052 ⟹ XP_063127122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271053 ⟹ XP_063127123

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271054 ⟹ XP_063127124

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,020 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271055 ⟹ XP_063127125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,917,781 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271056 ⟹ XP_063127126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271057 ⟹ XP_063127127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,019 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271058 ⟹ XP_063127128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271059 ⟹ XP_063127129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271060 ⟹ XP_063127130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,917,781 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271061 ⟹ XP_063127131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271062 ⟹ XP_063127132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271063 ⟹ XP_063127133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,022 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271064 ⟹ XP_063127134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271065 ⟹ XP_063127135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,890,594 - 27,997,506 (+)	NCBI

RefSeq Acc Id:

XM_063271066 ⟹ XP_063127136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	27,891,022 - 27,997,506 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001001504	(Get FASTA)	NCBI Sequence Viewer
	XP_006249169	(Get FASTA)	NCBI Sequence Viewer
	XP_038945002	(Get FASTA)	NCBI Sequence Viewer
	XP_038945003	(Get FASTA)	NCBI Sequence Viewer
	XP_038945004	(Get FASTA)	NCBI Sequence Viewer
	XP_038945005	(Get FASTA)	NCBI Sequence Viewer
	XP_038945007	(Get FASTA)	NCBI Sequence Viewer
	XP_038945014	(Get FASTA)	NCBI Sequence Viewer
	XP_038945021	(Get FASTA)	NCBI Sequence Viewer
	XP_038945022	(Get FASTA)	NCBI Sequence Viewer
	XP_063127117	(Get FASTA)	NCBI Sequence Viewer
	XP_063127118	(Get FASTA)	NCBI Sequence Viewer
	XP_063127119	(Get FASTA)	NCBI Sequence Viewer
	XP_063127120	(Get FASTA)	NCBI Sequence Viewer
	XP_063127121	(Get FASTA)	NCBI Sequence Viewer
	XP_063127122	(Get FASTA)	NCBI Sequence Viewer
	XP_063127123	(Get FASTA)	NCBI Sequence Viewer
	XP_063127124	(Get FASTA)	NCBI Sequence Viewer
	XP_063127125	(Get FASTA)	NCBI Sequence Viewer
	XP_063127126	(Get FASTA)	NCBI Sequence Viewer
	XP_063127127	(Get FASTA)	NCBI Sequence Viewer
	XP_063127128	(Get FASTA)	NCBI Sequence Viewer
	XP_063127129	(Get FASTA)	NCBI Sequence Viewer
	XP_063127130	(Get FASTA)	NCBI Sequence Viewer
	XP_063127131	(Get FASTA)	NCBI Sequence Viewer
	XP_063127132	(Get FASTA)	NCBI Sequence Viewer
	XP_063127133	(Get FASTA)	NCBI Sequence Viewer
	XP_063127134	(Get FASTA)	NCBI Sequence Viewer
	XP_063127135	(Get FASTA)	NCBI Sequence Viewer
	XP_063127136	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAM63551	(Get FASTA)	NCBI Sequence Viewer
	AAO32676	(Get FASTA)	NCBI Sequence Viewer
	AAO32677	(Get FASTA)	NCBI Sequence Viewer
	ABB88418	(Get FASTA)	NCBI Sequence Viewer
	ABB88419	(Get FASTA)	NCBI Sequence Viewer
	ABB88420	(Get FASTA)	NCBI Sequence Viewer
	ABB88421	(Get FASTA)	NCBI Sequence Viewer
	EDM13432	(Get FASTA)	NCBI Sequence Viewer
	EDM13433	(Get FASTA)	NCBI Sequence Viewer
	EDM13435	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002006.5
	ENSRNOP00000002010.5
	ENSRNOP00000069637
	ENSRNOP00000069637.1
	ENSRNOP00000073591.1
	ENSRNOP00000075217
	ENSRNOP00000075217.2
	ENSRNOP00000079734.1
	ENSRNOP00000085931.1
	ENSRNOP00000090423.1
	ENSRNOP00000093457.1

RefSeq Acc Id:

NP_001001504 ⟸ NM_001001504

- UniProtKB:

Q80ST5 (UniProtKB/TrEMBL), F1M710 (UniProtKB/TrEMBL), A6J0J3 (UniProtKB/TrEMBL), A0A0G2KA15 (UniProtKB/TrEMBL), Q78ZG1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSALSKLNTEVACVAVHNESVFV
MGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPKKVQRCEGGGRSIPRSSLEQCSDVYLL
QKMVEEVFDVLYSEAMGRATVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEH
SHRIRFKLRRPPDDGGQDTKALVEMNGISLLPKGSRDCGLHGQASKVSPQDLTPTATPSSMANF
LYSTSMPNHTIRELKQEVPTCPLTPSDLGLGWPVPEPHVPSTQDFSDCCGQAPAGPAGPLIQNV
HASKRILFSIVHDKSEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDP
EAVEIVGIPDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPAS
PPEDTATEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIGMLRPIKIEPEELDIIQVTVSDPS
PTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWQEERPAEESPGDVIRPLRKQVEMLFNTK
YAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRP
ELLTDGVKEPVMDTQERDSWDPLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNKKYGE
ALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRPFQG
LIPKPDEDDANRLGEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDI
PFRNPNTYDIHRLEKILKARDHVRMVIINQLQPFGDVCNNAKVPAKDNIPKRKRKRVSEGNSVS
SSSSSSSSSSSNPESVASTNQISLVQWPVYMVDYSGLNVQLPGPLDY

hide sequence

RefSeq Acc Id:	XP_006249169 ⟸ XM_006249107
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2JVV8 (UniProtKB/TrEMBL), A6J0J2 (UniProtKB/TrEMBL), G3V664 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSALSKLNTEVACVAVHNESVFV MGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPKKVQRCEGGGRSIPRSSLEQCSDVYLL QKMVEEVFDVLYSEAMGRATVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEH SHRIRFKLRRPPDDGGQDTKALVEMNGISLLPKGSRDCGLHGQASKVSPQDLTPTATPSSMANF LYSTSMPNHTIRELKQEVPTCPLTPSDLGLGWPVPEPHVPSTQDFSDCCGQAPAGPAGPLIQNV HASKRILFSIVHDKSEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDP EAVEIVGIPDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPAS PPEDTATEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIGMLRPIKIEPEELDIIQVTVSDPS PTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWQEERPAEESPGDVIRPLRKQVEMLFNTK YAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRP ELLTDGVKEPVMDTQERDSWDPLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNKKYGE ALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRPFQG LIPKPETKILTTGHEAGKTTRPRRPQQDSWQPDEDDANRLGEKVILREQVKELFNEKYGEALGL NRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKARDHVRMVIINQLQPFTEV CNDPKVPDEDDSNKLGKKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPD DIPFRNPNTYDIHRLEKILKARDHVRMVIINQLQPFGDVCNNAKVPAKDNIPKRKRKRVSEGNS VSSSSSSSSSSSSNPESVASTNQISLVQWPVYMVDYSGLNVQLPGPLDY hide sequence

RefSeq Acc Id:

ENSRNOP00000075217 ⟸ ENSRNOT00000079392

RefSeq Acc Id:

ENSRNOP00000069637 ⟸ ENSRNOT00000087656

RefSeq Acc Id:

ENSRNOP00000002010 ⟸ ENSRNOT00000002010

RefSeq Acc Id:	XP_038945002 ⟸ XM_039089074
- Peptide Label:	isoform X1
- UniProtKB:	A6J0J8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945003 ⟸ XM_039089075
- Peptide Label:	isoform X1
- UniProtKB:	A6J0J8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945004 ⟸ XM_039089076
- Peptide Label:	isoform X1
- UniProtKB:	A6J0J8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945005 ⟸ XM_039089077
- Peptide Label:	isoform X1
- UniProtKB:	A6J0J8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945007 ⟸ XM_039089079
- Peptide Label:	isoform X3
- UniProtKB:	A6J0J8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945014 ⟸ XM_039089086
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6GKN8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945021 ⟸ XM_039089093
- Peptide Label:	isoform X18
- UniProtKB:	Q8K3G2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945022 ⟸ XM_039089094
- Peptide Label:	isoform X19
- UniProtKB:	A6J0J7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000073591 ⟸ ENSRNOT00000085696

RefSeq Acc Id:

ENSRNOP00000002006 ⟸ ENSRNOT00000002006

RefSeq Acc Id:

ENSRNOP00000090423 ⟸ ENSRNOT00000109247

RefSeq Acc Id:

ENSRNOP00000079734 ⟸ ENSRNOT00000101585

RefSeq Acc Id:

ENSRNOP00000093457 ⟸ ENSRNOT00000112342

RefSeq Acc Id:

ENSRNOP00000085931 ⟸ ENSRNOT00000110226

RefSeq Acc Id:	XP_063127120 ⟸ XM_063271050
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063127123 ⟸ XM_063271053
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063127119 ⟸ XM_063271049
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063127131 ⟸ XM_063271061
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063127126 ⟸ XM_063271056
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063127122 ⟸ XM_063271052
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZN74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127132 ⟸ XM_063271062
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063127134 ⟸ XM_063271064
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063127118 ⟸ XM_063271048
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127129 ⟸ XM_063271059
- Peptide Label:	isoform X12
- UniProtKB:	A6J0J4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127128 ⟸ XM_063271058
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A198 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127135 ⟸ XM_063271065
- Peptide Label:	isoform X17
- UniProtKB:	A6J0J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127117 ⟸ XM_063271047
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K5X2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127121 ⟸ XM_063271051
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZN74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127127 ⟸ XM_063271057
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063127124 ⟸ XM_063271054
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2JVV8 (UniProtKB/TrEMBL), A6J0J2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127133 ⟸ XM_063271063
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063127136 ⟸ XM_063271066
- Peptide Label:	isoform X17
- UniProtKB:	A6J0J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127125 ⟸ XM_063271055
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2JVV8 (UniProtKB/TrEMBL), A6J0J2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127130 ⟸ XM_063271060
- Peptide Label:	isoform X12
- UniProtKB:	A6J0J4 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K5X2-F1-model_v2	AlphaFold	A0A0G2K5X2	1-1105	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698571

Promoter ID:

EPDNEW_R9096

Type:

initiation region

Name:

Gtf2ird1_1

Description:

GTF2I repeat domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	25,264,121 - 25,264,181	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620856	AgrOrtholog
BioCyc Gene	G2FUF-19573	BioCyc
Ensembl Genes	ENSRNOG00000001478	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000050193	Ensembl
Ensembl Transcript	ENSRNOT00000002006.5	UniProtKB/TrEMBL
	ENSRNOT00000002010.6	UniProtKB/TrEMBL
	ENSRNOT00000079392	ENTREZGENE
	ENSRNOT00000079392.2	UniProtKB/TrEMBL
	ENSRNOT00000085696.2	UniProtKB/TrEMBL
	ENSRNOT00000087656.2	UniProtKB/TrEMBL
	ENSRNOT00000101585.1	UniProtKB/TrEMBL
	ENSRNOT00000109247.1	UniProtKB/TrEMBL
	ENSRNOT00000110226.1	UniProtKB/TrEMBL
	ENSRNOT00000112342.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.1460.10	UniProtKB/TrEMBL
InterPro	GTF2I	UniProtKB/TrEMBL
	GTF2I-like_rpt_sf	UniProtKB/TrEMBL
	TF_II-I	UniProtKB/TrEMBL
KEGG Report	rno:246770	UniProtKB/TrEMBL
NCBI Gene	246770	ENTREZGENE
PANTHER	GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	GTF2I	UniProtKB/TrEMBL
PhenoGen	Gtf2ird1	PhenoGen
PIRSF	TF_II-I	UniProtKB/TrEMBL
PROSITE	GTF2I	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001478	RatGTEx
	ENSRNOG00000050193	RatGTEx
Superfamily-SCOP	SSF117773	UniProtKB/TrEMBL
UniProt	A0A0G2JVV8	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K5X2	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2KA15	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZN74	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A198	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AAS8_RAT	UniProtKB/TrEMBL
	A0A8I6GKN8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8Y045_RAT	UniProtKB/TrEMBL
	A6J0J2	ENTREZGENE, UniProtKB/TrEMBL
	A6J0J3	ENTREZGENE, UniProtKB/TrEMBL
	A6J0J4	ENTREZGENE, UniProtKB/TrEMBL
	A6J0J5	ENTREZGENE, UniProtKB/TrEMBL
	A6J0J7	ENTREZGENE, UniProtKB/TrEMBL
	A6J0J8	ENTREZGENE, UniProtKB/TrEMBL
	F1M710	ENTREZGENE
	G3V664	ENTREZGENE, UniProtKB/TrEMBL
	Q2V6F4_RAT	UniProtKB/TrEMBL
	Q2V6F6_RAT	UniProtKB/TrEMBL
	Q78ZG1	ENTREZGENE, UniProtKB/TrEMBL
	Q80ST5	ENTREZGENE
	Q8K3G2	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1M710	UniProtKB/TrEMBL
	Q80ST5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Gtf2ird1	GTF2I repeat domain containing 1	LOC100912262	general transcription factor II-I repeat domain-containing protein 1-like	Data merged from RGD:6488068	737654	PROVISIONAL
2012-07-05	LOC100912262	general transcription factor II-I repeat domain-containing protein 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2009-02-26	Gtf2ird1	GTF2I repeat domain containing 1	Gtf2ird1	general transcription factor II I repeat domain-containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Gtf2ird1	general transcription factor II I repeat domain-containing 1			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Gtf2ird1	general transcription factor II I repeat domain-containing 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_disease	human homolog may be associated with the Williams-Beuren microdeletion syndrome	708335

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI