Rpl36 (ribosomal protein L36) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Rpl36 (ribosomal protein L36) Rattus norvegicus
Analyze
Symbol: Rpl36
Name: ribosomal protein L36
RGD ID: 62085
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPL36 (ribosomal protein L36); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 3H-1,2-dithiole-3-thione.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L36; large ribosomal subunit protein eL36
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,529,117 - 1,534,534 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1126,560,003 - 126,560,369 (-)EnsemblGRCr8
mRatBN7.291,441,986 - 1,447,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,809,534 - 98,809,897 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5148,321,225 - 148,321,524 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx91,880,070 - 1,880,823 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,230,252 - 7,231,005 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,185,275 - 6,186,028 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,441,228 - 10,441,981 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,441,259 - 10,441,834 (-)Ensemblrn6Rnor6.0
Rnor_5.099,438,155 - 9,438,908 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera97,066,440 - 7,067,193 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,4-benzoquinone  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dimethoxyphenol  (ISO)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aconitine  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (EXP)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cocaine  (EXP)
cyclosporin A  (ISO)
deguelin  (ISO)
dibutyl phthalate  (EXP)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
eugenol  (EXP)
fenpyroximate  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosomorpholine  (EXP)
nitrates  (ISO)
nitrofen  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
picoxystrobin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L36. Chan YL, etal., Biochem Biophys Res Commun 1993 Apr 30;192(2):849-53.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:12962325   PMID:16452087   PMID:16791210   PMID:19946888   PMID:22658674   PMID:25957688   PMID:30053369  


Genomics

Comparative Map Data
Rpl36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,529,117 - 1,534,534 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1126,560,003 - 126,560,369 (-)EnsemblGRCr8
mRatBN7.291,441,986 - 1,447,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,809,534 - 98,809,897 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5148,321,225 - 148,321,524 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx91,880,070 - 1,880,823 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,230,252 - 7,231,005 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,185,275 - 6,186,028 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,441,228 - 10,441,981 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,441,259 - 10,441,834 (-)Ensemblrn6Rnor6.0
Rnor_5.099,438,155 - 9,438,908 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera97,066,440 - 7,067,193 (-)NCBICelera
Cytogenetic Map9q11NCBI
RPL36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,690,295 - 5,691,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,674,947 - 5,691,881 (+)Ensemblhg38GRCh38
GRCh37195,690,306 - 5,691,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,641,272 - 5,642,678 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34195,641,366 - 5,642,676NCBI
Celera195,627,643 - 5,629,049 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,451,041 - 5,452,447 (+)NCBIHuRef
CHM1_1195,689,881 - 5,691,287 (+)NCBICHM1_1
T2T-CHM13v2.0195,676,985 - 5,678,565 (+)NCBIT2T-CHM13v2.0
Rpl36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,917,094 - 56,921,246 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,920,416 - 56,921,243 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381756,610,094 - 56,614,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,613,416 - 56,614,243 (+)Ensemblmm10GRCm38
MGSCv371756,752,818 - 56,753,669 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361756,298,553 - 56,299,366 (+)NCBIMGSCv36mm8
Celera1760,957,594 - 60,958,445 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.42NCBI
Rpl36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,729,626 - 3,731,043 (-)Ensembl
ChiLan1.0NW_0049554953,729,626 - 3,731,043 (-)NCBIChiLan1.0ChiLan1.0
RPL36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,086,603 - 10,088,233 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,312,923 - 9,314,419 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,707,396 - 4,708,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,643,030 - 5,644,360 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,643,030 - 5,644,360 (+)EnsemblpanPan2panpan1.1
RPL36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,334,256 - 54,335,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,060,978 - 54,061,750 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02054,989,877 - 54,990,655 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,989,848 - 54,990,617 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,052,260 - 54,053,143 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,532,877 - 54,533,648 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,730,153 - 54,730,916 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,569,528 - 214,570,479 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,264,356 - 3,265,244 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,264,356 - 3,265,255 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,286,903 - 73,288,489 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1273,286,906 - 73,288,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,808,887 - 73,810,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL36
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,347,618 - 5,348,818 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660812,754,130 - 2,755,378 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,511,511 - 4,513,995 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248284,512,260 - 4,513,895 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl36
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1487,988,976 - 87,989,773 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl36
12 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000043704
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)916094576Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000043704   ⟹   ENSRNOP00000058934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl910,441,259 - 10,441,834 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000139964   ⟹   ENSRNOP00000109779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl91,533,743 - 1,534,532 (+)Ensembl
RefSeq Acc Id: NM_022504   ⟹   NP_071949
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,533,780 - 1,534,533 (+)NCBI
mRatBN7.291,446,643 - 1,447,396 (+)NCBI
Rnor_6.0910,441,228 - 10,441,981 (-)NCBI
Rnor_5.099,438,155 - 9,438,908 (-)NCBI
Celera97,066,440 - 7,067,193 (-)RGD
Sequence:
RefSeq Acc Id: XM_039084146   ⟹   XP_038940074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,529,117 - 1,534,534 (+)NCBI
mRatBN7.291,441,986 - 1,447,397 (+)NCBI
Protein Sequences
Protein RefSeqs NP_071949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58475 (Get FASTA)   NCBI Sequence Viewer  
  CAA48345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000109779
GenBank Protein P39032 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071949   ⟸   NM_022504
- UniProtKB: Q6PDV5 (UniProtKB/Swiss-Prot),   P39032 (UniProtKB/Swiss-Prot),   A0A0G2K6X1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058934   ⟸   ENSRNOT00000043704
RefSeq Acc Id: XP_038940074   ⟸   XM_039084146
- Peptide Label: isoform X1
- UniProtKB: A6KQW5 (UniProtKB/TrEMBL),   A0A0G2K6X1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109779   ⟸   ENSRNOT00000139964

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P39032-F1-model_v2 AlphaFold P39032 1-105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62085 AgrOrtholog
BioCyc Gene G2FUF-28522 BioCyc
Ensembl Genes ENSRNOG00000033473 Ensembl
  ENSRNOG00000055777 Ensembl
  ENSRNOG00000060478 Ensembl
  ENSRNOG00000079694 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000139964 ENTREZGENE
Gene3D-CATH 1.10.10.1760 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6888196 IMAGE-MGC_LOAD
InterPro L36e_sf UniProtKB/Swiss-Prot
  Ribosomal_L36e UniProtKB/Swiss-Prot
KEGG Report rno:58927 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72835 IMAGE-MGC_LOAD
NCBI Gene 58927 ENTREZGENE
PANTHER PTHR10114 UniProtKB/Swiss-Prot
Pfam Ribosomal_L36e UniProtKB/Swiss-Prot
PhenoGen Rpl36 PhenoGen
PROSITE RIBOSOMAL_L36E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000033473 RatGTEx
  ENSRNOG00000055777 RatGTEx
  ENSRNOG00000060478 RatGTEx
  ENSRNOG00000079694 RatGTEx
TIGR TC228760
UniProt A0A0G2K6X1 ENTREZGENE
  A0ABK0LZ43_RAT UniProtKB/TrEMBL
  A6KQW5 ENTREZGENE, UniProtKB/TrEMBL
  P39032 ENTREZGENE
  Q6PDV5 ENTREZGENE
  RL36_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6PDV5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl36  ribosomal protein L36      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 104 amino acids 61735