Arhgef9 (Cdc42 guanine nucleotide exchange factor 9) - Rat Genome Database

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Gene: Arhgef9 (Cdc42 guanine nucleotide exchange factor 9) Rattus norvegicus
Analyze
Symbol: Arhgef9
Name: Cdc42 guanine nucleotide exchange factor 9
RGD ID: 620719
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Involved in receptor clustering. Located in cell cortex. Is active in GABA-ergic synapse; glycinergic synapse; and postsynaptic specialization. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 8. Orthologous to human ARHGEF9 (Cdc42 guanine nucleotide exchange factor 9); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cdc42 guanine nucleotide exchange factor (GEF) 9; collybistin I; LOC100912165; rac/Cdc42 guanine nucleotide exchange factor 9; rho guanine nucleotide exchange factor 9; rho guanine nucleotide exchange factor 9-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,929,168 - 64,087,267 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX63,929,176 - 64,087,104 (-)EnsemblGRCr8
mRatBN7.2X59,919,560 - 60,077,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,920,870 - 60,077,513 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX61,390,247 - 61,547,577 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X64,890,769 - 65,048,097 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X62,468,985 - 62,626,907 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X64,249,576 - 64,428,444 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX64,248,278 - 64,428,592 (-)Ensemblrn6Rnor6.0
Rnor_5.0X65,150,714 - 65,329,116 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X82,594,347 - 82,754,179 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX60,352,255 - 60,508,707 (-)NCBICelera
RGSC_v3.1X82,667,647 - 82,827,471 (-)NCBI
Cytogenetic MapXq22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Collybistin, a newly identified brain-specific GEF, induces submembrane clustering of gephyrin. Kins S, etal., Nat Neurosci 2000 Jan;3(1):22-9.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Selective localization of collybistin at a subset of inhibitory synapses in brain circuits. Patrizi A, etal., J Comp Neurol. 2012 Jan 1;520(1):130-41. doi: 10.1002/cne.22702.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The crystal structure of Cdc42 in complex with collybistin II, a gephyrin-interacting guanine nucleotide exchange factor. Xiang S, etal., J Mol Biol. 2006 May 26;359(1):35-46. doi: 10.1016/j.jmb.2006.03.019. Epub 2006 Mar 29.
Additional References at PubMed
PMID:11727829   PMID:15215304   PMID:17690689   PMID:21540179   PMID:22659578   PMID:22778260   PMID:24297911   PMID:27609886   PMID:33316079  


Genomics

Comparative Map Data
Arhgef9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,929,168 - 64,087,267 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX63,929,176 - 64,087,104 (-)EnsemblGRCr8
mRatBN7.2X59,919,560 - 60,077,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,920,870 - 60,077,513 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX61,390,247 - 61,547,577 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X64,890,769 - 65,048,097 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X62,468,985 - 62,626,907 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X64,249,576 - 64,428,444 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX64,248,278 - 64,428,592 (-)Ensemblrn6Rnor6.0
Rnor_5.0X65,150,714 - 65,329,116 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X82,594,347 - 82,754,179 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX60,352,255 - 60,508,707 (-)NCBICelera
RGSC_v3.1X82,667,647 - 82,827,471 (-)NCBI
Cytogenetic MapXq22NCBI
ARHGEF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X63,634,967 - 63,785,214 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX63,634,967 - 63,809,274 (-)Ensemblhg38GRCh38
GRCh37X62,854,847 - 63,005,094 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X62,771,573 - 62,891,718 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X62,637,868 - 62,758,014NCBI
CeleraX63,201,689 - 63,352,277 (-)NCBICelera
Cytogenetic MapXq11.1NCBI
HuRefX56,681,875 - 56,830,928 (-)NCBIHuRef
CHM1_1X62,747,364 - 62,897,940 (-)NCBICHM1_1
T2T-CHM13v2.0X62,060,231 - 62,210,488 (-)NCBIT2T-CHM13v2.0
Arhgef9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X94,092,536 - 94,240,801 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX94,092,541 - 94,240,462 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X95,048,930 - 95,196,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX95,048,935 - 95,196,856 (-)Ensemblmm10GRCm38
MGSCv37X92,244,283 - 92,361,825 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X91,251,663 - 91,369,205 (-)NCBIMGSCv36mm8
CeleraX82,072,839 - 82,190,049 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.85NCBI
Arhgef9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554754,017,632 - 4,214,563 (-)Ensembl
ChiLan1.0NW_0049554754,020,922 - 4,214,464 (-)NCBIChiLan1.0ChiLan1.0
ARHGEF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X63,187,432 - 63,354,672 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X63,191,038 - 63,358,277 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X52,779,238 - 52,946,480 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X62,862,115 - 63,010,088 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX62,862,115 - 63,010,512 (-)EnsemblpanPan2panpan1.1
ARHGEF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X49,101,034 - 49,312,797 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX49,101,985 - 49,313,136 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX39,935,940 - 40,147,896 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X49,423,808 - 49,636,405 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX49,423,811 - 49,635,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X48,080,874 - 48,292,865 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X49,379,468 - 49,591,390 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X48,833,236 - 49,045,287 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arhgef9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X53,051,180 - 53,194,392 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366353,816,606 - 3,960,190 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366353,817,034 - 3,956,928 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX50,159,913 - 50,578,018 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X50,159,912 - 50,578,020 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X56,579,846 - 56,756,238 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X54,029,085 - 54,214,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX54,029,084 - 54,153,172 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660831,255,104 - 1,436,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248983,057,830 - 3,302,221 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248983,058,094 - 3,301,738 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Arhgef9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X53,257,613 - 53,338,173 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arhgef9
823 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:141
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000042654, ENSRNOT00000063861
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X6103585667175160Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 86 59 6 350 186 11 144 81 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000042654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,931,396 - 64,058,780 (-)Ensembl
mRatBN7.2 EnsemblX59,922,511 - 60,049,890 (-)Ensembl
Rnor_6.0 EnsemblX64,273,599 - 64,367,255 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000063861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,929,176 - 64,087,104 (-)Ensembl
mRatBN7.2 EnsemblX59,920,870 - 60,077,513 (-)Ensembl
Rnor_6.0 EnsemblX64,272,705 - 64,428,444 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX64,248,278 - 64,250,792 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,929,176 - 64,026,433 (-)Ensembl
mRatBN7.2 EnsemblX59,920,870 - 60,016,832 (-)Ensembl
Rnor_6.0 EnsemblX64,272,705 - 64,428,444 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,934,476 - 64,087,104 (-)Ensembl
mRatBN7.2 EnsemblX59,922,519 - 60,049,890 (-)Ensembl
Rnor_6.0 EnsemblX64,250,870 - 64,428,592 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000129280   ⟹   ENSRNOP00000111082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,929,176 - 64,087,104 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000131630   ⟹   ENSRNOP00000108703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,929,176 - 64,059,406 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164841   ⟹   ENSRNOP00000099705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,929,176 - 64,058,780 (-)Ensembl
RefSeq Acc Id: NM_001393743   ⟹   NP_001380672
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,059,406 (-)NCBI
mRatBN7.2X59,919,560 - 60,049,817 (-)NCBI
RefSeq Acc Id: NM_023957   ⟹   NP_076447
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,087,104 (-)NCBI
mRatBN7.2X59,919,560 - 60,077,513 (-)NCBI
Rnor_6.0X64,249,576 - 64,428,444 (-)NCBI
Rnor_5.0X65,150,714 - 65,329,116 (-)NCBI
RGSC_v3.4X82,594,347 - 82,754,179 (-)RGD
CeleraX60,352,255 - 60,508,707 (-)RGD
Sequence:
RefSeq Acc Id: XM_039100035   ⟹   XP_038955963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,087,267 (-)NCBI
mRatBN7.2X59,919,560 - 60,077,538 (-)NCBI
RefSeq Acc Id: XM_039100036   ⟹   XP_038955964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,058,707 (-)NCBI
mRatBN7.2X59,919,560 - 60,049,817 (-)NCBI
RefSeq Acc Id: XM_039100037   ⟹   XP_038955965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,058,714 (-)NCBI
mRatBN7.2X59,919,560 - 60,049,817 (-)NCBI
RefSeq Acc Id: XM_039100039   ⟹   XP_038955967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,057,512 (-)NCBI
mRatBN7.2X59,919,560 - 60,047,500 (-)NCBI
RefSeq Acc Id: XM_039100040   ⟹   XP_038955968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,932,127 - 64,087,134 (-)NCBI
mRatBN7.2X59,919,560 - 60,077,538 (-)NCBI
RefSeq Acc Id: XM_039100041   ⟹   XP_038955969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,087,129 (-)NCBI
mRatBN7.2X59,919,560 - 60,077,538 (-)NCBI
RefSeq Acc Id: XM_063280288   ⟹   XP_063136358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,057,679 (-)NCBI
RefSeq Acc Id: XM_063280289   ⟹   XP_063136359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,929,168 - 64,058,021 (-)NCBI
RefSeq Acc Id: XM_063280290   ⟹   XP_063136360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,932,127 - 64,057,679 (-)NCBI
RefSeq Acc Id: NP_076447   ⟸   NM_023957
- Peptide Label: isoform 1
- UniProtKB: Q9QX73 (UniProtKB/Swiss-Prot),   Q9ER22 (UniProtKB/Swiss-Prot),   A0A8I5ZLM2 (UniProtKB/TrEMBL),   A6IQ20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038955969   ⟸   XM_039100041
- Peptide Label: isoform X6
- UniProtKB: A6IQ21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955963   ⟸   XM_039100035
- Peptide Label: isoform X1
- UniProtKB: A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955968   ⟸   XM_039100040
- Peptide Label: isoform X5
- UniProtKB: A6IQ22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955965   ⟸   XM_039100037
- Peptide Label: isoform X3
- UniProtKB: A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955964   ⟸   XM_039100036
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZMR8 (UniProtKB/TrEMBL),   A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955967   ⟸   XM_039100039
- Peptide Label: isoform X4
- UniProtKB: A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380672   ⟸   NM_001393743
- Peptide Label: isoform 2
- UniProtKB: A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136359   ⟸   XM_063280289
- Peptide Label: isoform X4
- UniProtKB: A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136358   ⟸   XM_063280288
- Peptide Label: isoform X4
- UniProtKB: A6IQ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136360   ⟸   XM_063280290
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZZM9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099705   ⟸   ENSRNOT00000164841
Ensembl Acc Id: ENSRNOP00000108703   ⟸   ENSRNOT00000131630
Ensembl Acc Id: ENSRNOP00000111082   ⟸   ENSRNOT00000129280
Protein Domains
DH   PH   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QX73-F1-model_v2 AlphaFold Q9QX73 1-493 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620719 AgrOrtholog
BioCyc Gene G2FUF-2214 BioCyc
Ensembl Genes ENSRNOG00000007733 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000063861 ENTREZGENE
  ENSRNOT00000084678 ENTREZGENE
  ENSRNOT00000129280 ENTREZGENE
  ENSRNOT00000131630 ENTREZGENE
  ENSRNOT00000164841 ENTREZGENE
Gene3D-CATH 1.20.900.10 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
InterPro ARHGEF9_SH3 UniProtKB/Swiss-Prot
  DBL_dom_sf UniProtKB/Swiss-Prot
  DH-domain UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
  SOS1_NGEF_PH UniProtKB/Swiss-Prot
KEGG Report rno:66013 UniProtKB/Swiss-Prot
NCBI Gene 66013 ENTREZGENE
PANTHER RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 UniProtKB/Swiss-Prot
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9 UniProtKB/Swiss-Prot
Pfam RhoGEF UniProtKB/Swiss-Prot
  SH3_2 UniProtKB/Swiss-Prot
  SOS1_NGEF_PH UniProtKB/Swiss-Prot
PhenoGen Arhgef9 PhenoGen
PROSITE DH_2 UniProtKB/Swiss-Prot
  PH_DOMAIN UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000007733 RatGTEx
SMART RhoGEF UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
  SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF48065 UniProtKB/Swiss-Prot
  SSF50044 UniProtKB/Swiss-Prot
UniProt A0A8I5ZLM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIZ5_RAT UniProtKB/TrEMBL
  A0ABK0KXX9_RAT UniProtKB/TrEMBL
  A0ABK0LTS7_RAT UniProtKB/TrEMBL
  A0ABK0LZQ1_RAT UniProtKB/TrEMBL
  A6IQ19 ENTREZGENE, UniProtKB/TrEMBL
  A6IQ20 ENTREZGENE, UniProtKB/TrEMBL
  A6IQ21 ENTREZGENE, UniProtKB/TrEMBL
  A6IQ22 ENTREZGENE, UniProtKB/TrEMBL
  ARHG9_RAT UniProtKB/Swiss-Prot
  Q9ER22 ENTREZGENE
  Q9QX73 ENTREZGENE
UniProt Secondary Q9ER22 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Arhgef9  Cdc42 guanine nucleotide exchange factor 9  LOC100912165  rho guanine nucleotide exchange factor 9-like  Data merged from RGD:6488862 737654 PROVISIONAL
2015-11-19 Arhgef9  Cdc42 guanine nucleotide exchange factor 9  Arhgef9  Cdc42 guanine nucleotide exchange factor (GEF) 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912165  rho guanine nucleotide exchange factor 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Arhgef9  Cdc42 guanine nucleotide exchange factor (GEF) 9    collybistin I  Name updated 1299863 APPROVED
2002-08-07 Arhgef9  collybistin I      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_product belongs to the family of dbl-like GDP/GTP exchange factors (GEFs) 632270