Rab3ip (RAB3A interacting protein)

Gene: Rab3ip (RAB3A interacting protein) Rattus norvegicus

Analyze

Symbol:

Rab3ip

Name:

RAB3A interacting protein

RGD ID:

620650

Description:

Enables GTPase binding activity and guanyl-nucleotide exchange factor activity. Involved in negative regulation of filopodium assembly. Located in cytosol; perinuclear region of cytoplasm; and proximal dendrite. Orthologous to human RAB3IP (RAB3A interacting protein); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; 3H-1,2-dithiole-3-thione; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

rab-3A-interacting protein; RAB3A interacting protein (rabin3); RAB3A-interacting protein; rabin 3; rabin-3; RABIN3; SSX2-interacting protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB3IP (RAB3A interacting protein)	HGNC	EggNOG, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rab3ip (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rab3ip (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB3IP (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB3IP (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab3ip (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB3IP (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB3IP (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab3ip (RAB3A interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAB3IP (RAB3A interacting protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rab3ip (RAB3A interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rab3ip (RAB3A interacting protein (rabin3))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F54C9.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SEC2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rab3ip	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	54,417,418 - 54,461,253 (-)	NCBI		GRCr8
mRatBN7.2	7	52,531,461 - 52,575,295 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	52,532,401 - 52,561,043 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	54,439,162 - 54,467,810 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	56,642,257 - 56,670,909 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	56,420,162 - 56,448,806 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	59,927,486 - 59,971,518 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	59,928,426 - 59,957,232 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	59,932,332 - 59,976,359 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	56,229,363 - 56,258,007 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	56,250,358 - 56,278,708 (-)	NCBI
Celera	7	49,308,208 - 49,336,852 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

caffeine (EXP,ISO)

carbamazepine (ISO)

clofibrate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

fenthion (ISO)

flavonoids (EXP)

folic acid (ISO)

gentamycin (EXP)

methoxyacetic acid (EXP)

methoxychlor (EXP)

methylmercury chloride (EXP)

methylparaben (ISO)

Monobutylphthalate (EXP)

N-methyl-4-phenylpyridinium (ISO)

nickel subsulfide (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO)

exocytosis (IBA,IEA)

negative regulation of filopodium assembly (IMP)

positive regulation of cilium assembly (ISO)

protein localization to motile cilium (ISO)

protein localization to organelle (ISO)

protein targeting to membrane (ISO)

protein transport (IEA)

Cellular Component

centrosome (ISO)

cytoskeleton (IEA)

cytosol (IDA,ISO)

Golgi to plasma membrane transport vesicle (IBA,IEA)

lamellipodium (IEA)

nucleus (ISO,ISS)

perinuclear region of cytoplasm (IDA)

proximal dendrite (IDA)

Molecular Function

GTPase binding (IPI)

guanyl-nucleotide exchange factor activity (IDA,IEA,ISO,ISS)

identical protein binding (ISO,ISS)

protein binding (IPI,ISO)

small GTPase binding (ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

insulin responsive facilitative sugar transporter mediated glucose transport pathway (ISO)

Rab family mediated signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Interaction cloning of Rabin3, a novel protein that associates with the Ras-like GTPase Rab3A.	Brondyk WH, etal., Mol Cell Biol 1995 Mar;15(3):1137-43.
2.	NDR2-mediated Rabin8 phosphorylation is crucial for ciliogenesis by switching binding specificity from phosphatidylserine to Sec15.	Chiba S, etal., EMBO J. 2013 Mar 20;32(6):874-85. doi: 10.1038/emboj.2013.32. Epub 2013 Feb 22.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	A Rab8-specific GDP/GTP exchange factor is involved in actin remodeling and polarized membrane transport.	Hattula K, etal., Mol Biol Cell. 2002 Sep;13(9):3268-80.
5.	Signal transduction meets vesicle traffic: the software and hardware of GLUT4 translocation.	Klip A, etal., Am J Physiol Cell Physiol. 2014 May 15;306(10):C879-86. doi: 10.1152/ajpcell.00069.2014. Epub 2014 Mar 5.
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Chemical genetic identification of NDR1/2 kinase substrates AAK1 and Rabin8 Uncovers their roles in dendrite arborization and spine development.	Ultanir SK, etal., Neuron. 2012 Mar 22;73(6):1127-42. doi: 10.1016/j.neuron.2012.01.019. Epub 2012 Mar 21.

Additional References at PubMed

PMID:10580117	PMID:10602480	PMID:12007189	PMID:12477932	PMID:17574030	PMID:20937701	PMID:23382462	PMID:26258637

Genomics

Comparative Map Data

Rab3ip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	54,417,418 - 54,461,253 (-)	NCBI		GRCr8
mRatBN7.2	7	52,531,461 - 52,575,295 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	52,532,401 - 52,561,043 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	54,439,162 - 54,467,810 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	56,642,257 - 56,670,909 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	56,420,162 - 56,448,806 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	59,927,486 - 59,971,518 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	59,928,426 - 59,957,232 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	59,932,332 - 59,976,359 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	56,229,363 - 56,258,007 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	56,250,358 - 56,278,708 (-)	NCBI
Celera	7	49,308,208 - 49,336,852 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

RAB3IP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	69,738,242 - 69,823,204 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	69,738,860 - 69,823,204 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	70,132,640 - 70,216,984 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	68,418,898 - 68,503,251 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	68,419,454 - 68,495,770	NCBI
Celera	12	69,796,326 - 69,880,688 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI
HuRef	12	67,181,822 - 67,267,191 (+)	NCBI		HuRef
CHM1_1	12	70,100,838 - 70,185,226 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	69,717,376 - 69,802,330 (+)	NCBI		T2T-CHM13v2.0

Rab3ip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	116,741,685 - 116,786,361 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	116,741,689 - 116,786,674 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	116,905,780 - 116,950,456 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	116,905,784 - 116,950,769 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	116,342,840 - 116,387,436 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	116,309,894 - 116,354,490 (-)	NCBI		MGSCv36	mm8
Celera	10	118,848,689 - 118,893,539 (-)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	64.96	NCBI

Rab3ip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	10,031,666 - 10,090,456 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	10,031,333 - 10,091,438 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB3IP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	77,771,315 - 77,849,587 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	77,767,715 - 77,845,985 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	67,265,922 - 67,344,241 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	70,035,629 - 70,107,689 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	70,035,629 - 70,107,689 (+)	Ensembl	panpan1.1		panPan2

RAB3IP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	11,673,749 - 11,714,282 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	11,673,777 - 11,714,281 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	11,604,813 - 11,645,346 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	11,797,196 - 11,837,976 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	11,797,167 - 11,839,204 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	11,663,957 - 11,704,723 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	11,911,509 - 11,952,195 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	12,034,352 - 12,075,134 (+)	NCBI		UU_Cfam_GSD_1.0

Rab3ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	46,499,946 - 46,551,861 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	7,570,492 - 7,611,536 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936545	7,558,256 - 7,610,178 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB3IP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	34,003,180 - 34,053,896 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	34,002,792 - 34,053,893 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	36,601,756 - 36,652,151 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB3IP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	65,370,960 - 65,435,097 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	65,371,044 - 65,434,820 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	180,255,380 - 180,321,086 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab3ip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	28,015,282 - 28,085,045 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	28,014,245 - 28,085,967 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rab3ip
131 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	207
Count of miRNA genes:	150
Interacting mature miRNAs:	173
Transcripts:	ENSRNOT00000007258
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	19654317	52888450	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	21921195	66921195	Rat
1641885	Alcrsp9	Alcohol response QTL 9			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	7	24099606	69099606	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	24751841	69751841	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	26737401	63902784	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	29409683	53612950	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	37960569	82960569	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	41109692	56793354	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	42787314	87787314	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	43228750	88228750	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	43747012	108555253	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	43747099	102228765	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	44867533	89867533	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	46590070	91590070	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	47251783	65728867	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	47651439	92651439	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	47651439	92651439	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	47651439	92651439	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	47651439	92651439	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	47651439	92651439	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	47651439	92651439	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	47651439	92651439	Rat

Markers in Region

RH131429

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,532,420 - 52,532,631 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	59,928,446 - 59,928,656	NCBI	Rnor6.0
Rnor_5.0	7	59,933,292 - 59,933,502	UniSTS	Rnor5.0
RGSC_v3.4	7	56,229,385 - 56,229,595	UniSTS	RGSC3.4
Celera	7	49,308,230 - 49,308,440	UniSTS
RH 3.4 Map	7	483.0	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH131529

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	52,545,293 - 52,545,508 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	59,941,319 - 59,941,533	NCBI	Rnor6.0
Rnor_5.0	7	59,946,165 - 59,946,379	UniSTS	Rnor5.0
RGSC_v3.4	7	56,242,258 - 56,242,472	UniSTS	RGSC3.4
Celera	7	49,321,103 - 49,321,317	UniSTS
RH 3.4 Map	7	480.4	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	36	52	41	19	41			74	35	41	11
Low		7	5				8	11					8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC127500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U19181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000007258 ⟹ ENSRNOP00000007258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	52,532,401 - 52,561,043 (-)	Ensembl
Rnor_6.0 Ensembl	7	59,928,426 - 59,957,232 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081599 ⟹ ENSRNOP00000071773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	52,533,012 - 52,561,043 (-)	Ensembl
Rnor_6.0 Ensembl	7	59,928,867 - 59,957,228 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109052 ⟹ ENSRNOP00000079240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	52,532,401 - 52,561,043 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118552 ⟹ ENSRNOP00000091358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	52,532,401 - 52,561,043 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118928 ⟹ ENSRNOP00000076496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	52,534,087 - 52,561,043 (-)	Ensembl

RefSeq Acc Id:

NM_017313 ⟹ NP_059009

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,418,356 - 54,447,000 (-)	NCBI
mRatBN7.2	7	52,532,399 - 52,561,043 (-)	NCBI
Rnor_6.0	7	59,928,424 - 59,957,232 (-)	NCBI
Rnor_5.0	7	59,932,332 - 59,976,359 (-)	NCBI
RGSC_v3.4	7	56,229,363 - 56,258,007 (-)	RGD
Celera	7	49,308,208 - 49,336,852 (-)	RGD

Sequence:

show sequence

AGCTTAGGCTGTCCTATGATGAAGTCTTGCTATGGCTAACGACCCCTTAGAAGGTTTCCATGAA
GTGAACCTCGCTTCGCCTACCTCTCCAGACCTTCTTGGTGTGTGTGACCCGGGAACCCAAGAGC
AGACTACCTCCCCGAGCGTCATCTACCGGCCACACCCTTCGACGTTGTGCTCTGCCACTATCCA
GGCCAATGCCTTAAATCTTTCTGACCTTCCCACACAGCCTGTGTATTCATCCCCGAGGCATTTA
AACTGTGCAGAAATATCTAACATCAGCATTCATGTTCCAGAGCCAGCATCATCGGTAGCCTCTG
AGGTGGCAGCAGGGCTCACGAGGTTCACCTCAAGGAAGGACAGCTGCAACGCAGAGAGGGAGTT
TCTGCAGGGCGCCACCGTCACAGAGGCTTCTGCTGGCAACGATGACATCTTTGGGTTGAGCACG
GACAGCCTGTCCCGTTTACGGAGCCCATCTGTTCTGGAAGTTAGAGAGAAGGGCTACGAAAGGT
TAAAAGAAGAACTTGCAAAAGCTCAGAGGGAATTGAAGTTAAAAGATGAAGAATGTGAGAGACT
TTCGAAAGTGCGAGATCAACTTGGGCAGGAGTTGGAAGAACTCACAGCTAGTTTATTTGAGGAA
GCTCACAAGATGGTGAGAGAGGCGAACGTCAAGCAGGCAACTGCAGAAAAGCAGCTGAAGGAAG
CTCAAGGGAAAATTGATGTGCTTCAAGCCGAAGTGGCTGCGCTGAAGACACTCGTACTGTCCAG
TTCTCCAACATCGCCTACGCAGGAGCCTCTGGCGGCTGGAAAGACGCCCTTTAAAAGGGGGCAC
ACACGGAACAAAAGTACAAGCAGTGCTATGAGTGGCAGCCACCAGGACTTCAGTGCGATCCAGC
CAATCGTAAAAGACTGCAGAGAGGCCGATCTATCGCTGTATAATGAGTTCAGGTCTTGGAAGGA
TGAGCCCACAATGGACAGAACATGTCCCTTCCTAGACAAAATCTATCAGGAGGATATCTTTCCA
TGCTTAACATTCGCGAAAAGTGAGTTGGCTTCAGCTGTTCTGGAGGCCGTGGAGAACAACACTC
TAAGCATCGAGCCGGTAGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCGCGGTGGAGTGCGG
AGGGCCAAAAAAGTGTGCTCTCACTGGCCAGAGTAAGCCCTGTAAGCACAGGATTAAACTAGGG
GACTCCAGCAGCTATTACTACATCTCTCCGGTTTGCAGATACCGGATCACTTCTGTATGTAACT
TTTTTACATACATTCGATATATTCAGCAGGGACTTGTGAAACAGCAGGATGTTGATCAGATGTT
CTGGGAAGTTATGCAACTAAGAAAGGAGATGTCGTTGGCAAAGCTGGGATATTTCAAAGAAGAA
CTCTGATGCCCTGAGTACGGGGCCGTGCGTGCTCCTCCCTGGACAGCTGAAGGATGACAACGTT
TTTATGGTTACTCAATATTTATTTCTAAGGAGAAGGCCAAAGACTTCCCTCCTCTGCACACCAC
ACTATGAAGTGCTGTGATTTTTTTCAAACTGACTGAGCTGTACTTGCTTATCCCTTAATGGAAC
ACACTCTGAAGATTGCAGGCCTGCTAGTGATGGTAATTCAACACTGCAAATCCAGACCACCAAA
TAAACACCAGACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006241357 ⟹ XP_006241419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,461,253 (-)	NCBI
mRatBN7.2	7	52,531,461 - 52,575,295 (-)	NCBI
Rnor_6.0	7	59,927,486 - 59,971,517 (-)	NCBI
Rnor_5.0	7	59,932,332 - 59,976,359 (-)	NCBI

Sequence:

show sequence

GCAGGCGCAGTCGGCTCTCCCTCCCTCGGCTCCCATCGCAGTGCGCCCGCCGCGGCGGAGTGGA
GCGGCGTCTGTCCGCCGCCGTCCTTCGCGTCTCCCGAGCTGGGCACGCGCACCCTGCGGCTCTG
CGAGCGCCGCTGAGCGCGGGCGGCGGCCGCGGCGGGTCCGGCAGCTTAGGCTGTCCTATGATGA
AGTCTTGCTATGGCTAACGACCCCTTAGAAGGTTTCCATGAAGTGAACCTCGCTTCGCCTACCT
CTCCAGACCTTCTTGGTGTGTGTGACCCGGGAACCCAAGAGCAGACTACCTCCCCGAGCGTCAT
CTACCGGCCACACCCTTCGACGTTGTGCTCTGCCACTATCCAGGCCAATGCCTTAAATCTTTCT
GACCTTCCCACACAGCCTGTGTATTCATCCCCGAGGCATTTAAACTGTGCAGAAATATCTAACA
TCAGCATTCATGTTCCAGAGCCAGCATCATCGGTAGCCTCTGAGGTGGCAGCAGGGCTCACGAG
GTTCACCTCAAGGAAGGACAGCTGCAACGCAGAGAGGGAGTTTCTGCAGGGCGCCACCGTCACA
GAGGCTTCTGCTGGCAACGATGACATCTTTGGGTTGAGCACGGACAGCCTGTCCCGTTTACGGA
GCCCATCTGTTCTGGAAGTTAGAGAGAAGGGCTACGAAAGGTTAAAAGAAGAACTTGCAAAAGC
TCAGAGGGAATTGAAGTTAAAAGATGAAGAATGTGAGAGACTTTCGAAAGTGCGAGATCAACTT
GGGCAGGAGTTGGAAGAACTCACAGCTAGTTTATTTGAGGAAGCTCACAAGATGGTGAGAGAGG
CGAACGTCAAGCAGGCAACTGCAGAAAAGCAGCTGAAGGAAGCTCAAGGGAAAATTGATGTGCT
TCAAGCCGAAGTGGCTGCGCTGAAGACACTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAG
GAGCCTCTGGCGGCTGGAAAGACGCCCTTTAAAAGGGGGCACACACGGAACAAAAGTACAAGCA
GTGCTATGAGTGGCAGCCACCAGGACTTCAGTGCGATCCAGCCAATCGTAAAAGACTGCAGAGA
GGCCGATCTATCGCTGTATAATGAGTTCAGGTCTTGGAAGGATGAGCCCACAATGGACAGAACA
TGTCCCTTCCTAGACAAAATCTATCAGGAGGATATCTTTCCATGCTTAACATTCGCGAAAAGTG
AGTTGGCTTCAGCTGTTCTGGAGGCCGTGGAGAACAACACTCTAAGCATCGAGCCGGTAGGGTT
GCAGCCCATCCGCTTCGTGAAGGCTTCCGCGGTGGAGTGCGGAGGGCCAAAAAAGTGTGCTCTC
ACTGGCCAGAGTAAGCCCTGTAAGCACAGGATTAAACTAGGGGACTCCAGCAGCTATTACTACA
TCTCTCCGGTTTGCAGATACCGGATCACTTCTGTATGTAACTTTTTTACATACATTCGATATAT
TCAGCAGGGACTTGTGAAACAGCAGGATGTTGATCAGATGTTCTGGGAAGTTATGCAACTAAGA
AAGGAGATGTCGTTGGCAAAGCTGGGATATTTCAAAGAAGAACTCTGATGCCCTGAGTACGGGG
CCGTGCGTGCTCCTCCCTGGACAGCTGAAGGATGACAACGTTTTTATGGTTACTCAATATTTAT
TTCTAAGGAGAAGGCCAAAGACTTCCCTCCTCTGCACACCACACTATGAAGTGCTGTGATTTTT
TTCAAACTGACTGAGCTGTACTTGCTTATCCCTTAATGGAACACACTCTGAAGATTGCAGGCCT
GCTAGTGATGGTAATTCAACACTGCAAATCCAGACCACCAAATAAACACCAGACTGAACATGTG
TGTCTTTCTTAGCTCTGACTCGGCATAAAGTTGCAGAGGTTGATAGTAGTCTTCACATTGTACC
CCTGTGAGAGCGAGGAAGGAGCCAGCTGGACAGGGCTTCATGTCTGTGTGTATGCTGGCATTCA
GACGAAAGGTTTTATTTATTTTTATTCTGCCAGCTGTGATGTAGGGAATCCTTTTATCATAATG
ATTTGTTAAGTGTAATAAATGAAGACAGTGAACATTCTTGGGCATCCTGACGGAGGGCTTCACG
TTAGCATTGAGCATTATCGTGGAATAGAAGGAGTGTTAAGTTTAATAGACCAGGGCATGGCCTA
AAAGGATACGGTCTGCCAGCTCTGAGCTTCTGGTGACTGCTTCATTTCTAAGGTTGGACTAATG
CTGACACTCGGGAAGAAACGACCAACATCAGATGTACAAATAAAAGAGGTTCGTAGTGGAGACA
TAGTATAGGAAAGCAAAGGAAAACAGCCCGCTTCCTTAACTCGAGTAAGAACACTCCGCTCACA
CTTTTGGAGAACACCTTGGACTGTGAAATATTTCCTACTTATAGATGCACAATTCTGATTGTTG
TATGTGTGTGAATGTGTGTGTGTGTGCATCTCACTTGGGCCTTGTGCACACAGATCTGGAACTG
GAGTTGCAGACAGCCGTGAGCTGCCGTCTCTCCAGCTTGTCCCTCTCGCTTTAAAAGTAAATAA
TTTTTCTACATTGTATGTGTCTATGAGGGTGTACCTGTGTGTGTGTGGCAGTCAGATGACGGCT
TTTAGGAGTCTGTTCTCTCCTGTCTAGGTTTTCATGATCAAACAGACTCAGGACATCAGGGTTG
GTAGCAATACCTTTATGTGCTGAGCCATTTCTCTGGTGCGGATCTCCACATCCTAATCATTGTG
TATTCATCGCAATTAAACATAGTCTAATTGTCTCTA

hide sequence

RefSeq Acc Id:

XM_006241360 ⟹ XP_006241422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,461,252 (-)	NCBI
mRatBN7.2	7	52,531,461 - 52,575,295 (-)	NCBI
Rnor_6.0	7	59,927,486 - 59,971,517 (-)	NCBI
Rnor_5.0	7	59,932,332 - 59,976,359 (-)	NCBI

Sequence:

show sequence

GCAGGCGCAGTCGGCTCTCCCTCCCTCGGCTCCCATCGCAGTGCGCCCGCCGCGGCGGAGTGGA
GCGGCGTCTGTCCGCCGCCGTCCTTCGCGTCTCCCGAGCTGGGCACGCGCACCCTGCGGCTCTG
CGAGCGCCGCTGAGCGCGGGCGGCGGCCGCGGCGGGTCCGGCAGGCTGTCCTATGATGAAGTCT
TGCTATGGCTAACGACCCCTTAGAAGGTTTCCATGAAGTGAACCTCGCTTCGCCTACCTCTCCA
GACCTTCTTGGTGTGTGTGACCCGGGAACCCAAGAGCAGACTACCTCCCCGAGCGTCATCTACC
GGCCACACCCTTCGACGTTGTGCTCTGCCACTATCCAGGCCAATGCCTTAAATCTTTCTGACCT
TCCCACACAGCCTGTGTATTCATCCCCGAGGCATTTAAACTGTGCAGAAATATCTAACATCAGC
ATTCATGTTCCAGAGCCAGCATCATCGGTAGCCTCTGAGGTGGCAGCAGGGCTCACGAGGTTCA
CCTCAAGGAAGGACAGCTGCAACGCAGAGAGGGAGTTTCTGCAGGGCGCCACCGTCACAGAGGC
TTCTGCTGGCAACGATGACATCTTTGGGTTGAGCACGGACAGCCTGTCCCGTTTACGGAGCCCA
TCTGTTCTGGAAGTTAGAGAGAAGGGCTACGAAAGGTTAAAAGAAGAACTTGCAAAAGCTCAGA
GGGAATTGAAGTTAAAAGATGAAGAATGTGAGAGACTTTCGAAAGTGCGAGATCAACTTGGGCA
GGAGTTGGAAGAACTCACAGCTAGTTTATTTGAGGAAGCTCACAAGATGGTGAGAGAGGCGAAC
GTCAAGCAGGCAACTGCAGAAAAGCAGCTGAAGGAAGCTCAAGGGAAAATTGATGTGCTTCAAG
CCGAAGTGGCTGCGCTGAAGACACTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAGGAGCC
TCTGGCGGCTGGAAAGACGCCCTTTAAAAGGGGGCACACACGGAACAAAAGTACAAGCAGTGCT
ATGAGTGGCAGCCACCAGGACTTCAGTGCGATCCAGCCAATCGTAAAAGACTGCAGAGAGGCCG
ATCTATCGCTGTATAATGAGTTCAGGTCTTGGAAGGATGAGCCCACAATGGACAGAACATGTCC
CTTCCTAGACAAAATCTATCAGGAGGATATCTTTCCATGCTTAACATTCGCGAAAAGTGAGTTG
GCTTCAGCTGTTCTGGAGGCCGTGGAGAACAACACTCTAAGCATCGAGCCGGTAGGGTTGCAGC
CCATCCGCTTCGTGAAGGCTTCCGCGGTGGAGTGCGGAGGGCCAAAAAAGTGTGCTCTCACTGG
CCAGAGTAAGCCCTGTAAGCACAGGATTAAACTAGGGGACTCCAGCAGCTATTACTACATCTCT
CCGGTTTGCAGATACCGGATCACTTCTGTATGTAACTTTTTTACATACATTCGATATATTCAGC
AGGGACTTGTGAAACAGCAGGATGTTGATCAGATGTTCTGGGAAGTTATGCAACTAAGAAAGGA
GATGTCGTTGGCAAAGCTGGGATATTTCAAAGAAGAACTCTGATGCCCTGAGTACGGGGCCGTG
CGTGCTCCTCCCTGGACAGCTGAAGGATGACAACGTTTTTATGGTTACTCAATATTTATTTCTA
AGGAGAAGGCCAAAGACTTCCCTCCTCTGCACACCACACTATGAAGTGCTGTGATTTTTTTCAA
ACTGACTGAGCTGTACTTGCTTATCCCTTAATGGAACACACTCTGAAGATTGCAGGCCTGCTAG
TGATGGTAATTCAACACTGCAAATCCAGACCACCAAATAAACACCAGACTGAACATGTGTGTCT
TTCTTAGCTCTGACTCGGCATAAAGTTGCAGAGGTTGATAGTAGTCTTCACATTGTACCCCTGT
GAGAGCGAGGAAGGAGCCAGCTGGACAGGGCTTCATGTCTGTGTGTATGCTGGCATTCAGACGA
AAGGTTTTATTTATTTTTATTCTGCCAGCTGTGATGTAGGGAATCCTTTTATCATAATGATTTG
TTAAGTGTAATAAATGAAGACAGTGAACATTCTTGGGCATCCTGACGGAGGGCTTCACGTTAGC
ATTGAGCATTATCGTGGAATAGAAGGAGTGTTAAGTTTAATAGACCAGGGCATGGCCTAAAAGG
ATACGGTCTGCCAGCTCTGAGCTTCTGGTGACTGCTTCATTTCTAAGGTTGGACTAATGCTGAC
ACTCGGGAAGAAACGACCAACATCAGATGTACAAATAAAAGAGGTTCGTAGTGGAGACATAGTA
TAGGAAAGCAAAGGAAAACAGCCCGCTTCCTTAACTCGAGTAAGAACACTCCGCTCACACTTTT
GGAGAACACCTTGGACTGTGAAATATTTCCTACTTATAGATGCACAATTCTGATTGTTGTATGT
GTGTGAATGTGTGTGTGTGTGCATCTCACTTGGGCCTTGTGCACACAGATCTGGAACTGGAGTT
GCAGACAGCCGTGAGCTGCCGTCTCTCCAGCTTGTCCCTCTCGCTTTAAAAGTAAATAATTTTT
CTACATTGTATGTGTCTATGAGGGTGTACCTGTGTGTGTGTGGCAGTCAGATGACGGCTTTTAG
GAGTCTGTTCTCTCCTGTCTAGGTTTTCATGATCAAACAGACTCAGGACATCAGGGTTGGTAGC
AATACCTTTATGTGCTGAGCCATTTCTCTGGTGCGGATCTCCACATCCTAATCATTGTGTATTC
ATCGCAATTAAACATAGTCTAATTGTCTCTA

hide sequence

RefSeq Acc Id:

XM_008765383 ⟹ XP_008763605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,445,114 (-)	NCBI
mRatBN7.2	7	52,531,461 - 52,559,156 (-)	NCBI
Rnor_6.0	7	59,927,486 - 59,955,295 (-)	NCBI

Sequence:

show sequence

CCTGTCCCGTTTACGGAGCCCATCTGTTCTGGAAGTTAGAGAGAAGGGCTACGAAAGGTTAAAA
GAAGAACTTGCAAAAGCTCAGAGGGGTTTGGTGGTGTATGTCTGTAATCGTAGCACTCAGAACA
CTGAGGCAGGAGGATTGCTGTGACTTTGAGGAATTGAAGTTAAAAGATGAAGAATGTGAGAGAC
TTTCGAAAGTGCGAGATCAACTTGGGCAGGAGTTGGAAGAACTCACAGCTAGTTTATTTGAGGA
AGCTCACAAGATGGTGAGAGAGGCGAACGTCAAGCAGGCAACTGCAGAAAAGCAGCTGAAGGAA
GCTCAAGGGAAAATTGATGTGCTTCAAGCCGAAGTGGCTGCGCTGAAGACACTCGTACTGTCCA
GTTCTCCAACATCGCCTACGCAGGAGCCTCTGGCGGCTGGAAAGACGCCCTTTAAAAGGGGGCA
CACACGGAACAAAAGTACAAGCAGTGCTATGAGTGGCAGCCACCAGGACTTCAGTGCGATCCAG
CCAATCGTAAAAGACTGCAGAGAGGCCGATCTATCGCTGTATAATGAGTTCAGGTCTTGGAAGG
ATGAGCCCACAATGGACAGAACATGTCCCTTCCTAGACAAAATCTATCAGGAGGATATCTTTCC
ATGCTTAACATTCGCGAAAAGTGAGTTGGCTTCAGCTGTTCTGGAGGCCGTGGAGAACAACACT
CTAAGCATCGAGCCGGTAGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCGCGGTGGAGTGCG
GAGGGCCAAAAAAGTGTGCTCTCACTGGCCAGAGTAAGCCCTGTAAGCACAGGATTAAACTAGG
GGACTCCAGCAGCTATTACTACATCTCTCCGGTTTGCAGATACCGGATCACTTCTGTATGTAAC
TTTTTTACATACATTCGATATATTCAGCAGGGACTTGTGAAACAGCAGGATGTTGATCAGATGT
TCTGGGAAGTTATGCAACTAAGAAAGGAGATGTCGTTGGCAAAGCTGGGATATTTCAAAGAAGA
ACTCTGATGCCCTGAGTACGGGGCCGTGCGTGCTCCTCCCTGGACAGCTGAAGGATGACAACGT
TTTTATGGTTACTCAATATTTATTTCTAAGGAGAAGGCCAAAGACTTCCCTCCTCTGCACACCA
CACTATGAAGTGCTGTGATTTTTTTCAAACTGACTGAGCTGTACTTGCTTATCCCTTAATGGAA
CACACTCTGAAGATTGCAGGCCTGCTAGTGATGGTAATTCAACACTGCAAATCCAGACCACCAA
ATAAACACCAGACTGAACATGTGTGTCTTTCTTAGCTCTGACTCGGCATAAAGTTGCAGAGGTT
GATAGTAGTCTTCACATTGTACCCCTGTGAGAGCGAGGAAGGAGCCAGCTGGACAGGGCTTCAT
GTCTGTGTGTATGCTGGCATTCAGACGAAAGGTTTTATTTATTTTTATTCTGCCAGCTGTGATG
TAGGGAATCCTTTTATCATAATGATTTGTTAAGTGTAATAAATGAAGACAGTGAACATTCTTGG
GCATCCTGACGGAGGGCTTCACGTTAGCATTGAGCATTATCGTGGAATAGAAGGAGTGTTAAGT
TTAATAGACCAGGGCATGGCCTAAAAGGATACGGTCTGCCAGCTCTGAGCTTCTGGTGACTGCT
TCATTTCTAAGGTTGGACTAATGCTGACACTCGGGAAGAAACGACCAACATCAGATGTACAAAT
AAAAGAGGTTCGTAGTGGAGACATAGTATAGGAAAGCAAAGGAAAACAGCCCGCTTCCTTAACT
CGAGTAAGAACACTCCGCTCACACTTTTGGAGAACACCTTGGACTGTGAAATATTTCCTACTTA
TAGATGCACAATTCTGATTGTTGTATGTGTGTGAATGTGTGTGTGTGTGCATCTCACTTGGGCC
TTGTGCACACAGATCTGGAACTGGAGTTGCAGACAGCCGTGAGCTGCCGTCTCTCCAGCTTGTC
CCTCTCGCTTTAAAAGTAAATAATTTTTCTACATTGTATGTGTCTATGAGGGTGTACCTGTGTG
TGTGTGGCAGTCAGATGACGGCTTTTAGGAGTCTGTTCTCTCCTGTCTAGGTTTTCATGATCAA
ACAGACTCAGGACATCAGGGTTGGTAGCAATACCTTTATGTGCTGAGCCATTTCTCTGGTGCGG
ATCTCCACATCCTAATCATTGTGTATTCATCGCAATTAAACATAGTCTAATTGTCTCTA

hide sequence

RefSeq Acc Id:

XM_039078619 ⟹ XP_038934547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,461,246 (-)	NCBI
mRatBN7.2	7	52,531,461 - 52,575,289 (-)	NCBI

RefSeq Acc Id:

XM_039078620 ⟹ XP_038934548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,428,623 (-)	NCBI
mRatBN7.2	7	52,531,461 - 52,542,669 (-)	NCBI

RefSeq Acc Id:

XM_063263142 ⟹ XP_063119212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,452,861 (-)	NCBI

RefSeq Acc Id:

XM_063263143 ⟹ XP_063119213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,452,869 (-)	NCBI

RefSeq Acc Id:

XM_063263144 ⟹ XP_063119214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,452,870 (-)	NCBI

RefSeq Acc Id:

XM_063263145 ⟹ XP_063119215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	54,417,418 - 54,461,244 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_059009	(Get FASTA)	NCBI Sequence Viewer
	XP_006241419	(Get FASTA)	NCBI Sequence Viewer
	XP_006241422	(Get FASTA)	NCBI Sequence Viewer
	XP_008763605	(Get FASTA)	NCBI Sequence Viewer
	XP_038934547	(Get FASTA)	NCBI Sequence Viewer
	XP_038934548	(Get FASTA)	NCBI Sequence Viewer
	XP_063119212	(Get FASTA)	NCBI Sequence Viewer
	XP_063119213	(Get FASTA)	NCBI Sequence Viewer
	XP_063119214	(Get FASTA)	NCBI Sequence Viewer
	XP_063119215	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA67890	(Get FASTA)	NCBI Sequence Viewer
	AAI27501	(Get FASTA)	NCBI Sequence Viewer
	EDM16646	(Get FASTA)	NCBI Sequence Viewer
	EDM16647	(Get FASTA)	NCBI Sequence Viewer
	EDM16648	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007258
	ENSRNOP00000007258.4
	ENSRNOP00000071773.1
	ENSRNOP00000076496.1
	ENSRNOP00000079240.1
	ENSRNOP00000091358.1
	ENSRNOP00055017926
	ENSRNOP00060010814
	ENSRNOP00065016293
GenBank Protein	Q62739	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_059009 ⟸ NM_017313

- UniProtKB:

Q62739 (UniProtKB/Swiss-Prot), A1L127 (UniProtKB/TrEMBL), A0A0G2K1B4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANDPLEGFHEVNLASPTSPDLLGVCDPGTQEQTTSPSVIYRPHPSTLCSATIQANALNLSDLP
TQPVYSSPRHLNCAEISNISIHVPEPASSVASEVAAGLTRFTSRKDSCNAEREFLQGATVTEAS
AGNDDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQE
LEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPL
AAGKTPFKRGHTRNKSTSSAMSGSHQDFSAIQPIVKDCREADLSLYNEFRSWKDEPTMDRTCPF
LDKIYQEDIFPCLTFAKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQ
SKPCKHRIKLGDSSSYYYISPVCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEM
SLAKLGYFKEEL

hide sequence

RefSeq Acc Id:	XP_006241422 ⟸ XM_006241360
- Peptide Label:	isoform X1
- UniProtKB:	Q62739 (UniProtKB/Swiss-Prot), A1L127 (UniProtKB/TrEMBL), A0A0G2K1B4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANDPLEGFHEVNLASPTSPDLLGVCDPGTQEQTTSPSVIYRPHPSTLCSATIQANALNLSDLP TQPVYSSPRHLNCAEISNISIHVPEPASSVASEVAAGLTRFTSRKDSCNAEREFLQGATVTEAS AGNDDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQE LEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPL AAGKTPFKRGHTRNKSTSSAMSGSHQDFSAIQPIVKDCREADLSLYNEFRSWKDEPTMDRTCPF LDKIYQEDIFPCLTFAKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQ SKPCKHRIKLGDSSSYYYISPVCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEM SLAKLGYFKEEL hide sequence

RefSeq Acc Id:	XP_006241419 ⟸ XM_006241357
- Peptide Label:	isoform X1
- UniProtKB:	Q62739 (UniProtKB/Swiss-Prot), A1L127 (UniProtKB/TrEMBL), A0A0G2K1B4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANDPLEGFHEVNLASPTSPDLLGVCDPGTQEQTTSPSVIYRPHPSTLCSATIQANALNLSDLP TQPVYSSPRHLNCAEISNISIHVPEPASSVASEVAAGLTRFTSRKDSCNAEREFLQGATVTEAS AGNDDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQE LEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPL AAGKTPFKRGHTRNKSTSSAMSGSHQDFSAIQPIVKDCREADLSLYNEFRSWKDEPTMDRTCPF LDKIYQEDIFPCLTFAKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQ SKPCKHRIKLGDSSSYYYISPVCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEM SLAKLGYFKEEL hide sequence

RefSeq Acc Id:	XP_008763605 ⟸ XM_008765383
- Peptide Label:	isoform X4
- UniProtKB:	A6IGQ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVIVALRTLRQEDCCDFEELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANVKQ ATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLAAGKTPFKRGHTRNKSTSSAMSG SHQDFSAIQPIVKDCREADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFAKSELASA VLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSKPCKHRIKLGDSSSYYYISPVC RYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL hide sequence

RefSeq Acc Id:

ENSRNOP00000071773 ⟸ ENSRNOT00000081599

RefSeq Acc Id:

ENSRNOP00000007258 ⟸ ENSRNOT00000007258

RefSeq Acc Id:	XP_038934547 ⟸ XM_039078619
- Peptide Label:	isoform X5
- UniProtKB:	A6IGQ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934548 ⟸ XM_039078620
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000076496 ⟸ ENSRNOT00000118928

RefSeq Acc Id:

ENSRNOP00000091358 ⟸ ENSRNOT00000118552

RefSeq Acc Id:

ENSRNOP00000079240 ⟸ ENSRNOT00000109052

RefSeq Acc Id:	XP_063119215 ⟸ XM_063263145
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119214 ⟸ XM_063263144
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZML7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119213 ⟸ XM_063263143
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AR50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119212 ⟸ XM_063263142
- Peptide Label:	isoform X1
- UniProtKB:	Q62739 (UniProtKB/Swiss-Prot), A1L127 (UniProtKB/Swiss-Prot)

Protein Domains

GDP/GTP exchange factor Sec2 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62739-F1-model_v2	AlphaFold	Q62739	1-460	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620650	AgrOrtholog
BioCyc Gene	G2FUF-34026	BioCyc
Ensembl Genes	ENSRNOG00000005362	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055012895	UniProtKB/Swiss-Prot
	ENSRNOG00060008450	UniProtKB/Swiss-Prot
	ENSRNOG00065012906	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007258	ENTREZGENE
	ENSRNOT00000007258.6	UniProtKB/Swiss-Prot
	ENSRNOT00000081599.2	UniProtKB/TrEMBL
	ENSRNOT00000109052.1	UniProtKB/TrEMBL
	ENSRNOT00000118552.1	UniProtKB/TrEMBL
	ENSRNOT00000118928.1	UniProtKB/TrEMBL
	ENSRNOT00055022084	UniProtKB/Swiss-Prot
	ENSRNOT00060014115	UniProtKB/Swiss-Prot
	ENSRNOT00065021125	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.5.4880	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7457420	IMAGE-MGC_LOAD
InterPro	RAB3IL/RAB3IP/Sec2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sec2_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29885	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156662	IMAGE-MGC_LOAD
NCBI Gene	29885	ENTREZGENE
PANTHER	PTHR14430	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RAB-3A-INTERACTING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Sec2p	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rab3ip	PhenoGen
RatGTEx	ENSRNOG00000005362	RatGTEx
	ENSRNOG00055012895	RatGTEx
	ENSRNOG00060008450	RatGTEx
	ENSRNOG00065012906	RatGTEx
Superfamily-SCOP	Sec2 N-terminal region	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K1B4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YBC2_RAT	UniProtKB/TrEMBL
	A0A8I5ZML7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AR50	ENTREZGENE, UniProtKB/TrEMBL
	A1L127	ENTREZGENE
	A6IGQ0	ENTREZGENE, UniProtKB/TrEMBL
	Q62739	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A1L127	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-31	Rab3ip	RAB3A interacting protein	Rab3ip	RAB3A interacting protein (rabin3)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-24	Rab3ip	RAB3A interacting protein (rabin3)	Rab3ip	RAB3A interacting protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Rab3ip	RAB3A interacting protein	RABIN3	rabin 3	Symbol and Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a coiled coil domain and a region with similarity to S. cerevisiae Sec2p	633748
gene_expression	abundantly expressed in testes	633748

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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