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Gene: Faim (Fas apoptotic inhibitory molecule) Rattus norvegicus

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Symbol:

Faim

Name:

Fas apoptotic inhibitory molecule

RGD ID:

620572

Description:

Involved in positive regulation of canonical NF-kappaB signal transduction and positive regulation of neurogenesis. Predicted to be located in cytoplasm. Orthologous to human FAIM (Fas apoptotic inhibitory molecule); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

fas apoptotic inhibitory molecule 1; LOC100362113; rFAIM

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FAIM (Fas apoptotic inhibitory molecule)	HGNC	Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Faim (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Faim (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FAIM (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FAIM (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Faim (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FAIM (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FAIM (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Faim (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Faim (Fas apoptotic inhibitory molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Faim (Fas apoptotic inhibitory molecule)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FAIM (Fas apoptotic inhibitory molecule)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	faima (Fas apoptotic inhibitory molecule a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10257	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10257	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C44B11.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C44B11.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	faim	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	108,423,259 - 108,445,365 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	108,423,221 - 108,440,151 (+)	Ensembl				GRCr8
mRatBN7.2	8	99,543,877 - 99,569,499 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	99,542,405 - 99,560,562 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	105,210,396 - 105,226,216 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	103,409,696 - 103,425,516 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	101,252,200 - 101,268,021 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	107,225,119 - 107,247,228 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	106,816,152 - 106,827,580 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	8	107,225,212 - 107,241,224 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	106,649,714 - 106,671,537 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	9,522,803 - 9,539,269 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	98,949,776 - 98,965,494 (+)	NCBI		Celera
RGSC_v3.1	8	103,854,182 - 103,869,924 (+)	NCBI
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bifenthrin (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

entinostat (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

indinavir (ISO)

ivermectin (ISO)

lamivudine (ISO)

leflunomide (ISO)

monosodium L-glutamate (ISO)

motexafin gadolinium (ISO)

nickel dichloride (EXP)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

quercetin (ISO)

quercitrin (ISO)

resveratrol (ISO)

saquinavir (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

zidovudine (ISO)

zinc acetate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

negative regulation of apoptotic process (IEA)

negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (IBA,ISO)

positive regulation of canonical NF-kappaB signal transduction (IMP)

positive regulation of neurogenesis (IMP)

regulation of signal transduction (IEA)

Cellular Component

cytoplasm (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	A novel gene coding for a Fas apoptosis inhibitory molecule (FAIM) isolated from inducibly Fas-resistant B lymphocytes.	Schneider TJ, etal., J Exp Med 1999 Mar 15;189(6):949-56.
6.	The death receptor antagonist FAIM promotes neurite outgrowth by a mechanism that depends on ERK and NF-kapp B signaling.	Sole C, etal., J Cell Biol 2004 Nov 8;167(3):479-92. Epub 2004 Nov 1.

Additional References at PubMed

PMID:24305822	PMID:28383554

Genomics

Comparative Map Data

Faim
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	108,423,259 - 108,445,365 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	108,423,221 - 108,440,151 (+)	Ensembl				GRCr8
mRatBN7.2	8	99,543,877 - 99,569,499 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	99,542,405 - 99,560,562 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	105,210,396 - 105,226,216 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	103,409,696 - 103,425,516 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	101,252,200 - 101,268,021 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	107,225,119 - 107,247,228 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	106,816,152 - 106,827,580 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	8	107,225,212 - 107,241,224 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	106,649,714 - 106,671,537 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	9,522,803 - 9,539,269 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	98,949,776 - 98,965,494 (+)	NCBI		Celera
RGSC_v3.1	8	103,854,182 - 103,869,924 (+)	NCBI
Cytogenetic Map	8	q31	NCBI

FAIM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	138,608,771 - 138,633,376 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	138,608,550 - 138,633,376 (+)	Ensembl			hg38	GRCh38
GRCh37	3	138,327,613 - 138,352,218 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	139,810,232 - 139,834,908 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	136,752,476 - 136,777,527 (+)	NCBI		Celera
Cytogenetic Map	3	q22.3	NCBI
HuRef	3	135,702,306 - 135,726,894 (+)	NCBI		HuRef
CHM1_1	3	138,291,316 - 138,316,081 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	141,349,369 - 141,374,071 (+)	NCBI		T2T-CHM13v2.0

Faim
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	98,868,426 - 98,884,076 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	98,868,426 - 98,884,074 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	98,986,373 - 99,002,019 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	98,986,373 - 99,002,021 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	98,886,792 - 98,902,438 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	98,795,725 - 98,811,370 (+)	NCBI		MGSCv36	mm8
Celera	9	98,524,144 - 98,539,790 (+)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	51.41	NCBI

Faim
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	447,094 - 461,396 (-)	Ensembl
ChiLan1.0	NW_004955501	447,085 - 459,691 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAIM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	136,514,995 - 136,547,629 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	136,521,207 - 136,547,789 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	135,639,242 - 135,664,449 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	143,243,585 - 143,267,787 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	143,243,675 - 143,267,787 (+)	Ensembl			panPan2	panpan1.1

FAIM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	34,807,093 - 34,822,577 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	34,807,249 - 34,822,244 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	34,800,789 - 34,829,125 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	35,349,544 - 35,378,112 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	35,349,705 - 35,364,480 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	35,030,132 - 35,058,685 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	35,096,065 - 35,124,631 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	35,346,264 - 35,374,614 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Faim
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	74,103,727 - 74,123,257 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936540	843,152 - 863,947 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936540	843,463 - 863,029 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAIM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	79,397,931 - 79,411,905 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	79,397,647 - 79,411,917 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	87,082,125 - 87,092,596 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAIM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	51,906,832 - 51,932,145 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	51,905,188 - 51,921,162 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	24,911,027 - 24,935,973 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Faim
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	15,114,558 - 15,145,027 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Faim
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	90,578,997 - 90,591,861 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Faim
53 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	498
Count of miRNA genes:	164
Interacting mature miRNAs:	188
Transcripts:	ENSRNOT00000045329, ENSRNOT00000045821, ENSRNOT00000046832, ENSRNOT00000047613
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
8693654	Alc32	Alcohol consumption QTL 32	2	0.755	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	8	97492344	116428905	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH132415

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	99,559,527 - 99,559,737 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	107,240,768 - 107,240,977	NCBI	Rnor6.0
Rnor_6.0	8	106,827,098 - 106,827,307	NCBI	Rnor6.0
Rnor_5.0	8	106,665,077 - 106,665,286	UniSTS	Rnor5.0
Rnor_5.0	8	106,261,481 - 106,261,690	UniSTS	Rnor5.0
RGSC_v3.4	8	103,850,284 - 103,850,493	UniSTS	RGSC3.4
RGSC_v3.4	2	9,539,084 - 9,539,293	UniSTS	RGSC3.4
Celera	8	98,965,309 - 98,965,518	UniSTS
RH 3.4 Map	8	1040.19	UniSTS
Cytogenetic Map	8	q31	UniSTS

BE112969

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	108,429,187 - 108,429,614 (+)	Marker Load Pipeline
mRatBN7.2	8	99,549,810 - 99,550,237 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	107,231,054 - 107,231,480	NCBI	Rnor6.0
Rnor_6.0	8	106,817,384 - 106,817,810	NCBI	Rnor6.0
Rnor_5.0	8	106,655,640 - 106,656,066	UniSTS	Rnor5.0
Rnor_5.0	8	106,251,767 - 106,252,193	UniSTS	Rnor5.0
RGSC_v3.4	8	103,840,570 - 103,840,996	UniSTS	RGSC3.4
RGSC_v3.4	2	9,529,370 - 9,529,796	UniSTS	RGSC3.4
Celera	8	98,955,598 - 98,956,024	UniSTS
RH 3.4 Map	8	1051.79	UniSTS
Cytogenetic Map	8	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
23	5	76	203	124	124	74	103	74	12	416	224	11	169	93	116	50	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_080895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002729959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF412334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF467453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045329 ⟹ ENSRNOP00000038960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	107,225,212 - 107,240,953 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000045821 ⟹ ENSRNOP00000039749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	108,423,221 - 108,440,151 (+)	Ensembl
mRatBN7.2 Ensembl	8	99,542,405 - 99,560,562 (+)	Ensembl
Rnor_6.0 Ensembl	8	107,229,832 - 107,241,224 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000047613 ⟹ ENSRNOP00000049149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	108,423,300 - 108,440,151 (+)	Ensembl
mRatBN7.2 Ensembl	8	99,543,912 - 99,560,562 (+)	Ensembl
Rnor_6.0 Ensembl	8	106,816,152 - 106,827,580 (+)	Ensembl

RefSeq Acc Id:

NM_080895 ⟹ NP_543171

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,423,346 - 108,439,089 (+)	NCBI
mRatBN7.2	8	99,543,969 - 99,559,713 (+)	NCBI
Rnor_6.0	8	107,225,212 - 107,240,953 (+)	NCBI
Rnor_5.0	8	106,649,714 - 106,671,537 (+)	NCBI
RGSC_v3.4	8	9,522,803 - 9,539,269 (+)	RGD
Celera	8	98,949,776 - 98,965,494 (+)	RGD

Sequence:

show sequence

CGGCCGCGACAGCTGCTGACTACGTCGTGGGATCGGGAGCCGGTGGCGGCGCGCGGAGCAGCCC
TCTCTGGTAGCCTGGGAAAAAATGACAGATCTCGTAGCTGTTTGGGACGTAGCATTAAGTGACG
GAGTGCACAAGATTGAATTTGAGCATGGGACCACGTCAGGCAAACGAGTTGTGTACGTGGATGG
GAAGGAAGAGATAAGAAGAGAGTGGATGTTCAAATTGGTGGGCAAAGAAACGTTCTTTGTCGGA
GCTGCAAAGACCAAAGCCACCATAAATATAGACGCCATAAGTGGCTTCGCCTATGAGTACACAC
TGGAGATCGACGGGAAGAGCCTCAAGAAGTACATGGAGAACAGATCTAAGACCACCAACACCTG
GGTATTGCACTTGGACGGCGAGGAACTGAGAGTTGTTCTGGAAAAAGACACTATGGATGTATGG
TGCAATGGTCAGAGGATGGAGACAGCGGGCGAGTTTGTAGATGACGGGACTGAAACACACTTCA
GCGTGGGGAACCACGACTGTTACATAAAGGCCGTCAGCAGCGGGAAGAGGAGAGAAGGGATCAT
CCACACGCTCATTGTGGATAACAGGGAAATCCCAGAGCTCACTCAGTGACGCTGTCTTAGTGAG
TTCTGAGCTGAAGAGGTGACTCAGGACCTGCCCATGG

hide sequence

RefSeq Acc Id:

XM_002729959 ⟹ XP_002730005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,423,261 - 108,439,361 (+)	NCBI
mRatBN7.2	8	99,543,882 - 99,559,985 (+)	NCBI

Sequence:

show sequence

GCTCAGTAGAGCAGTGGGCGGGGTCTCGTCGAGCCCGGAAGGCAGTAGGAGGCTGGGCGCCTGG
CATGAGGGTGCGGGAGCCCGGTGGGCGCGGCCGCGACAGCTGCTGACTACGTCGTGGGATCGGG
AGCCGGTGGCGGCGCGCGGAGCAGGCTGTTGCTAACCATGGCGTCTGGAGATGACAGTCCTATC
TTTGAAGATGATGAAAGCCCTCTCTGTAGCCTGGAAAAAATGACAGATCTCGTAGCTGTTTGGG
ACGTAGCATTAAGTGACGGAGTGCACAAGATTGAATTTGAGCATGGGACCACGTCAGGCAAACG
AGTTGTGTACGTGGATGGGAAGGAAGAGATAAGAAGAGAGTGGATGTTCAAATTGGTGGGCAAA
GAAACGTTCTTTGTCGGAGCTGCAAAGACCAAAGCCACCATAAATATAGACGCCATAAGTGGCT
TCGCCTATGAGTACACACTGGAGATCGACGGGAAGAGCCTCAAGAAGTACATGGAGAACCGATC
TAAGACCACCAACACCTGGGTATTGCACTTGGACGGCGAGGAACTGAGAGTTGTTCTGGAAAAA
GACACTATGGATGTATGGTGCAATGGTCAGAGGATGGAGACAGCGGGCGAGTTTGTAGATGACG
GGACTGAAACACACTTCAGCGTGGGGAACCACGACTGTTACATAAAGGCCGTCAGCAGCGGGAA
GAGGAGAGAAGGGATCATCCACACGCTCATTGTGGATAACAGGGAAATCCCAGAGCTCACTCAG
TGACGCTGTCTTAGTGAGTTCTGAGCTGAAGAGGTGACCTCAGGACCCGCCCATGGCTGCGGTA
ATTAAATGTGCTCACGGTGTACATATTGGTAGATTTAGTCTGCAATGTTGTTATTTTTATCTTT
TGTTACTTGAAACTGTAATATTCTAATGGTCAAGAAAAAAGAAACATGGACTCATAAAAATTTA
TTTTTTAACTAATGTAAAAATGTTTCTAACTCAAATGGAAAATAAAATGTGGACCAAAACCACT
CACATCGCACAACAGTAACCTTGACTATAGTAAACACTGTAAAATAAAATGGTGCTGCTGGTCG
TGCCCACA

hide sequence

RefSeq Acc Id:

XM_006243611 ⟹ XP_006243673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,423,299 - 108,439,361 (+)	NCBI
mRatBN7.2	8	99,544,389 - 99,559,985 (+)	NCBI

Sequence:

show sequence

ACGACCAGAGTAGGATTCTGTAGTCTCTTCGTAGAATTCTGTAGTTTCTCTCCTGCAAAGGCTG
ACTTGGAAACCTGTCTCGGGCTGTTGCTAACCATGGCGTCTGGAGATGACAGTCCTATCTTTGA
AGATGATGAAAGCCCTCTCTGTAGCCTGGAAAAAATGACAGATCTCGTAGCTGTTTGGGACGTA
GCATTAAGTGACGGAGTGCACAAGATTGAATTTGAGCATGGGACCACGTCAGGCAAACGAGTTG
TGTACGTGGATGGGAAGGAAGAGATAAGAAGAGAGTGGATGTTCAAATTGGTGGGCAAAGAAAC
GTTCTTTGTCGGAGCTGCAAAGACCAAAGCCACCATAAATATAGACGCCATAAGTGGCTTCGCC
TATGAGTACACACTGGAGATCGACGGGAAGAGCCTCAAGAAGTACATGGAGAACCGATCTAAGA
CCACCAACACCTGGGTATTGCACTTGGACGGCGAGGAACTGAGAGTTGTTCTGGAAAAAGACAC
TATGGATGTATGGTGCAATGGTCAGAGGATGGAGACAGCGGGCGAGTTTGTAGATGACGGGACT
GAAACACACTTCAGCGTGGGGAACCACGACTGTTACATAAAGGCCGTCAGCAGCGGGAAGAGGA
GAGAAGGGATCATCCACACGCTCATTGTGGATAACAGGGAAATCCCAGAGCTCACTCAGTGACG
CTGTCTTAGTGAGTTCTGAGCTGAAGAGGTGACCTCAGGACCCGCCCATGGCTGCGGTAATTAA
ATGTGCTCACGGTGTACATATTGGTAGATTTAGTCTGCAATGTTGTTATTTTTATCTTTTGTTA
CTTGAAACTGTAATATTCTAATGGTCAAGAAAAAAGAAACATGGACTCATAAAAATTTATTTTT
TAACTAATGTAAAAATGTTTCTAACTCAAATGGAAAATAAAATGTGGACCAAAACCACTCACAT
CGCACAACAGTAACCTTGACTATAGTAAACACTGTAAAATAAAATGGTGCTGCTGGTCGTGCCC
ACA

hide sequence

RefSeq Acc Id:

XM_017596121 ⟹ XP_017451610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,423,259 - 108,445,365 (+)	NCBI
mRatBN7.2	8	99,543,877 - 99,569,499 (+)	NCBI

Sequence:

show sequence

AAGCTCAGTAGAGCAGTGGGCGGGGTCTCGTCGAGCCCGGAAGGCAGTAGGAGGCTGGGCGCCT
GGCATGAGGGTGCGGGAGCCCGGTGGGCGCGGCCGCGACAGCTGCTGACTACGTCGTGGGATCG
GGAGCCGGTGGCGGCGCGCGGAGCAGGCTGTTGCTAACCATGGCGTCTGGAGATGACAGTCCTA
TCTTTGAAGATGATGAAAGCCCTCTCTGTAGCCTGGAAAAAATGACAGATCTCGTAGCTGTTTG
GGACGTAGCATTAAGTGACGGAGTGCACAAGATTGAATTTGAGCATGGGACCACGTCAGGCAAA
CGAGTTGTGTACGTGGATGGGAAGGAAGAGATAAGAAGAGAGTGGATGTTCAAATTGGTGGGCA
AAGAAACGTTCTTTGTCGGAGCTGCAAAGACCAAAGCCACCATAAATATAGACGCCATAAGTGG
CTTCGCCTATGAGTACACACTGGAGATCGACGGGAAGAGCCTCAAGAAGTACATGGAGAACCGA
TCTAAGACCACCAACACCTGGGTATTGCACTTGGACGGCGAGGAACTGAGAGTTGTTCTGGAAA
AAGACACTATGGATGTATGGTGCAATGGTCAGAGGATGGAGACAGCGACAATAAAGAGGCCCAG
ACTAGCAAATTGGATTAGAAAGCAAGAATCATCCTTTTTTGCTGCCTCCAAGAAACATACCTTA
CTATCACCTTAGGCAAAGGTATGGAAAACGATTCCCCGAGCAAATGGAACTAAGAAACACAGAG
ATTCTCCTGGAGTCTGCAATAGGAACCCTGTGGACCTTGACTTTAGACTATGTCTCCACAACTG
AGAAGAATTTTCTGTAGCTTGTGCCTCCAAACTGTAGGGAAACAGTTGTTTATCCTACAGTGTT
TATCCTGAGTGACCTACAGCAAGATCTGACTCATTAACTCCATGTCGGGTGGTCTAAGCCAGGG
CTGTCTTGGAGGCCAGAAAGGGGCATTGAATCCCCCAGAGCTGGCACTACAGGCTGTTGTGAAT
TATCCAAACTAGGGGTATGAACTGAACCCCAGCCTTGTGAATGACTGAACTCTGGGTTCAGTTG
AGATATCCTGACTCAATAATATAGAGAGATAGAAGAATCTCAACTTCAGGTCCCCATGACACAT
GTATATACCTACATGCACATGCACTACCCTCAACACAAATACATACTTGTAGCCGGTCTTTGCT
ACTTTGTGGATTCTTTTCCCCACCCTTTATCCCCCTTGGTTTCACCCCTATCACTAGATAGGAG
AGGAAGAAGGAAAGGGGAGAGAGAGGATAGATGGAGATCTTTGAATCTCTTCTTGTTTCTTCTT
TGAGCATGACTACTAACAAGCAACAAACCACTTCCCTGAATGACCAAAGGCCACCGATTGACCT
ATCAGGTCATGGGCATTTATATGCCCTCTGAAAAAATTCCCAGAATTCTAAACATCACACAAGT
GCAGAAATTATCTGCACCTGGCAAAAACATGGCTCTGTTAGAGCATGAGGCGAATCATAGTCAG
CAGTCCCATATCCCCACACCTGATACTAAAATGAAAATATTTTTATATTATTTCTGTGGTTTTT
AAACAAAGCAGAATTCCAGAATTTCCACTACATACACTCACACTAATAAAGTAAAATATACACA
CTACCATGAAACCTTCAGCACCCTGAGGAAGGAGCTGCAGGTGCTGAATTTGCAGGAATCCAAC
TCTGGAGAACCACTGCTGTAATAAAGTCAGAACAGGACAAAGAGTGAACAAACCATAGTAGTTT
GCTCTGGCTGTGCTGTGCACCTCACATCCAGAGAGCACGGAAATGGAGCTGAAGTCATACTATT
TGAAGGACTTAGTTTTGTTTTTCTAAAACTCAAAATTCAAATCGTACTTGCTTTTATTAACTAA
TATCCAGAAAAATTACATCTTCATCTCCAAGATAATTGTCCCAGGTTCTTTAACCCCTTGAATA
CAGGGGGAACTGAAGAAAGAAAAAACAGAAACAAAATTATGAAATACTAGTTTATTCTCATTAA
GGATTTCTTTTTAGGTTGGTGGAGTGCAGGAGCACAAGGCATATTTCATTGAAGATACAGGATC
AAATCATCAGCAAAACGTAATTAAAAGTTCAAGTGATATAATCTCTGAGGCAGATGATCAACCT
GAAAAAGAAAGGCATTTGCTTAGGAAAAGCAACTGTGTATGATAGTGTAAAATTTACATATTCT
AATGAAAGGTAGAAATATATTTTAAGATGTCAATAATGCAAACCATTCACATAAAAACATGTAA
TCCAAAGACTTGGGTACAAAGGCAGAGGCAGCCCAAGTTCAAAGTCAGTGAGGGTGACATAAGG
AAACCCTTAAAAATGTATCAATAGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGTCTGC
TCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATAATCA
GGTCTGGTGCCCTCTTCTGGCCTGCAGGTGTACATGCAGGCAGAAAGCTGTATGATGTATACAT
AATAAATAAATAAATAAATAAATGTTTAAAAAA

hide sequence

RefSeq Acc Id:

XM_063264801 ⟹ XP_063120871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,423,419 - 108,439,361 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_543171	(Get FASTA)	NCBI Sequence Viewer
	XP_002730005	(Get FASTA)	NCBI Sequence Viewer
	XP_006243673	(Get FASTA)	NCBI Sequence Viewer
	XP_017451610	(Get FASTA)	NCBI Sequence Viewer
	XP_063120871	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAL60162	(Get FASTA)	NCBI Sequence Viewer
	AAL77007	(Get FASTA)	NCBI Sequence Viewer
	EDL77454	(Get FASTA)	NCBI Sequence Viewer
	EDL77455	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039749
	ENSRNOP00000039749.2
	ENSRNOP00000049149
	ENSRNOP00000049149.3
GenBank Protein	Q8R5H8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_543171 ⟸ NM_080895
- UniProtKB:	A6I2C3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRREWMFKLVGKETFFVGAAKTKAT INIDAISGFAYEYTLEIDGKSLKKYMENRSKTTNTWVLHLDGEELRVVLEKDTMDVWCNGQRME TAGEFVDDGTETHFSVGNHDCYIKAVSSGKRREGIIHTLIVDNREIPELTQ hide sequence

Ensembl Acc Id:

ENSRNOP00000039749 ⟸ ENSRNOT00000045821

Ensembl Acc Id:

ENSRNOP00000049149 ⟸ ENSRNOT00000047613

Ensembl Acc Id:

ENSRNOP00000038960 ⟸ ENSRNOT00000045329

RefSeq Acc Id:	XP_017451610 ⟸ XM_017596121
- Peptide Label:	isoform X2
- Sequence:	show sequence MASGDDSPIFEDDESPLCSLEKMTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRR EWMFKLVGKETFFVGAAKTKATINIDAISGFAYEYTLEIDGKSLKKYMENRSKTTNTWVLHLDG EELRVVLEKDTMDVWCNGQRMETATIKRPRLANWIRKQESSFFAASKKHTLLSP hide sequence

RefSeq Acc Id:	XP_002730005 ⟸ XM_002729959
- Peptide Label:	isoform X1
- UniProtKB:	Q8VHR4 (UniProtKB/Swiss-Prot), Q8R5H8 (UniProtKB/Swiss-Prot), A6I2C2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASGDDSPIFEDDESPLCSLEKMTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRR EWMFKLVGKETFFVGAAKTKATINIDAISGFAYEYTLEIDGKSLKKYMENRSKTTNTWVLHLDG EELRVVLEKDTMDVWCNGQRMETAGEFVDDGTETHFSVGNHDCYIKAVSSGKRREGIIHTLIVD NREIPELTQ hide sequence

RefSeq Acc Id:	XP_006243673 ⟸ XM_006243611
- Peptide Label:	isoform X1
- UniProtKB:	Q8VHR4 (UniProtKB/Swiss-Prot), Q8R5H8 (UniProtKB/Swiss-Prot), A6I2C2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASGDDSPIFEDDESPLCSLEKMTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRR EWMFKLVGKETFFVGAAKTKATINIDAISGFAYEYTLEIDGKSLKKYMENRSKTTNTWVLHLDG EELRVVLEKDTMDVWCNGQRMETAGEFVDDGTETHFSVGNHDCYIKAVSSGKRREGIIHTLIVD NREIPELTQ hide sequence

RefSeq Acc Id:	XP_063120871 ⟸ XM_063264801
- Peptide Label:	isoform X3
- UniProtKB:	A6I2C3 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8R5H8-F1-model_v2	AlphaFold	Q8R5H8	1-201	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696205

Promoter ID:

EPDNEW_R6730

Type:

multiple initiation site

Name:

Faim_1

Description:

Fas apoptotic inhibitory molecule

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	107,225,164 - 107,225,224	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620572	AgrOrtholog
BioCyc Gene	G2FUF-29407	BioCyc
Ensembl Genes	ENSRNOG00000030069	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000030463	Ensembl
Ensembl Transcript	ENSRNOT00000045821	ENTREZGENE
	ENSRNOT00000045821.4	UniProtKB/Swiss-Prot
	ENSRNOT00000047613	ENTREZGENE
	ENSRNOT00000047613.5	UniProtKB/Swiss-Prot
Gene3D-CATH	2.40.128.180	UniProtKB/Swiss-Prot
InterPro	FAIM1	UniProtKB/Swiss-Prot
	FAIM1_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:140930	UniProtKB/Swiss-Prot
NCBI Gene	140930	ENTREZGENE
PANTHER	FAS APOPTOTIC INHIBITORY MOLECULE 1	UniProtKB/Swiss-Prot
	PTHR13088	UniProtKB/Swiss-Prot
Pfam	FAIM1	UniProtKB/Swiss-Prot
PhenoGen	Faim	PhenoGen
RatGTEx	ENSRNOG00000030069	RatGTEx
	ENSRNOG00000030463	RatGTEx
UniProt	A6I2C2	ENTREZGENE, UniProtKB/TrEMBL
	A6I2C3	ENTREZGENE, UniProtKB/TrEMBL
	FAIM1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q8VHR4	ENTREZGENE
UniProt Secondary	Q8VHR4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-08-27	Faim	Fas apoptotic inhibitory molecule	LOC100362113	Fas apoptotic inhibitory molecule	Data merged from RGD:2318770	737654	APPROVED
2010-05-05	LOC100362113	Fas apoptotic inhibitory molecule			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Faim	Fas apoptotic inhibitory molecule			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Faim	Fas apoptotic inhibitory molecule			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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