Rpl9 (ribosomal protein L9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpl9 (ribosomal protein L9) Rattus norvegicus
Analyze
Symbol: Rpl9 (Ensembl: Rpl9-ps30)
Name: ribosomal protein L9 (Ensembl:ribosomal protein L9, pseudogene 30)
RGD ID: 62049
Description: Predicted to be a structural constituent of ribosome. Involved in cellular response to nerve growth factor stimulus. Part of cytosolic large ribosomal subunit. Orthologous to human RPL9 (ribosomal protein L9); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L9; large ribosomal subunit protein uL6; LOC100362838; ribosomal protein L9-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC121529648   Rpl9-ps30   Rpl9-ps31  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,247,536 - 43,250,784 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1443,247,588 - 43,250,782 (+)EnsemblGRCr8
GRCr8 Ensembl185,750,563 - 85,751,641 (-)EnsemblGRCr8
mRatBN7.21442,893,945 - 42,897,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,622,574 - 76,623,282 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl39,583,796 - 9,584,625 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1442,893,942 - 42,897,136 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1443,247,901 - 43,251,110 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,547,820 - 44,551,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01443,027,937 - 43,031,148 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,524,419 - 44,527,613 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,524,416 - 44,527,613 (+)Ensemblrn6Rnor6.0
Rnor_5.01444,343,832 - 44,347,026 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41476,274,247 - 76,274,951 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1442,044,585 - 42,047,779 (+)NCBICelera
RGSC_v3.11445,595,501 - 45,598,265 (+)NCBI
Cytogenetic Map14p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (ISO)
clobetasol  (ISO)
cocaine  (EXP)
crocidolite asbestos  (ISO)
cylindrospermopsin  (ISO)
cypermethrin  (ISO)
D-glucose  (ISO)
deguelin  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
fenpyroximate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lovastatin  (ISO)
maneb  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (EXP)
nimesulide  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
picoxystrobin  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
thapsigargin  (EXP)
tolcapone  (EXP)
trichloroethene  (EXP,ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Nerve growth factor selectively regulates expression of transcripts encoding ribosomal proteins. Angelastro JM, etal., BMC Neurosci. 2002;3:3. Epub 2002 Feb 28.
2. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. The primary structure of rat ribosomal protein L9. Suzuki K, etal., Gene 1990 Sep 14;93(2):297-300.
11. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins L4, L5, L7, L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37, and L39. Tsurugi K, etal., J Biol Chem. 1976 Dec 25;251(24):7940-6.
Additional References at PubMed
PMID:7600302   PMID:12477932   PMID:12962325   PMID:15489334   PMID:15632090   PMID:16452087   PMID:19946888   PMID:21423176   PMID:21630459   PMID:22871113   PMID:23979707   PMID:24625528  
PMID:35352799  


Genomics

Comparative Map Data
Rpl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,247,536 - 43,250,784 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1443,247,588 - 43,250,782 (+)EnsemblGRCr8
GRCr8 Ensembl185,750,563 - 85,751,641 (-)EnsemblGRCr8
mRatBN7.21442,893,945 - 42,897,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,622,574 - 76,623,282 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl39,583,796 - 9,584,625 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1442,893,942 - 42,897,136 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1443,247,901 - 43,251,110 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,547,820 - 44,551,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01443,027,937 - 43,031,148 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,524,419 - 44,527,613 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,524,416 - 44,527,613 (+)Ensemblrn6Rnor6.0
Rnor_5.01444,343,832 - 44,347,026 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41476,274,247 - 76,274,951 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1442,044,585 - 42,047,779 (+)NCBICelera
RGSC_v3.11445,595,501 - 45,598,265 (+)NCBI
Cytogenetic Map14p11NCBI
RPL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,454,124 - 39,458,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,451,747 - 39,458,948 (-)Ensemblhg38GRCh38
GRCh37439,455,744 - 39,460,542 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,132,139 - 39,136,963 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34439,278,312 - 39,283,103NCBI
Celera439,893,571 - 39,898,396 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,780,734 - 38,785,561 (-)NCBIHuRef
CHM1_1439,455,196 - 39,460,021 (-)NCBICHM1_1
T2T-CHM13v2.0439,423,773 - 39,428,574 (-)NCBIT2T-CHM13v2.0
Rpl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,545,707 - 65,548,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,545,707 - 65,548,787 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38565,388,364 - 65,391,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,388,364 - 65,391,444 (-)Ensemblmm10GRCm38
MGSCv37565,779,603 - 65,782,670 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36565,667,500 - 65,670,127 (-)NCBIMGSCv36mm8
Celera562,665,042 - 62,668,109 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.66NCBI
Rpl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,907,796 - 7,912,472 (+)Ensembl
ChiLan1.0NW_0049554437,907,628 - 7,912,472 (+)NCBIChiLan1.0ChiLan1.0
RPL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,643,523 - 39,648,358 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,835,560 - 39,840,380 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,782,911 - 33,787,737 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,635,067 - 39,639,897 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,635,067 - 39,639,810 (-)EnsemblpanPan2panpan1.1
RPL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,989,526 - 72,993,944 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,989,592 - 72,993,949 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha375,536,388 - 75,540,806 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0373,762,952 - 73,767,372 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,763,031 - 73,769,192 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1373,029,545 - 73,033,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,175,818 - 73,180,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,562,350 - 73,566,771 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,229,936 - 39,234,941 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364827,060,860 - 7,068,280 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364827,063,294 - 7,068,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,694,388 - 30,699,189 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1830,693,198 - 30,699,189 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,308,212 - 32,314,218 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,850,523 - 10,855,303 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604757,242,697 - 57,247,408 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248704,825,786 - 4,830,404 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248704,825,745 - 4,830,404 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11122,408,857 - 22,411,994 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl9
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:68
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000038927, ENSRNOT00000042201
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142252151767521517Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141889519263895192Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141790672654251504Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 20 105 219 117 123 74 120 74 462 260 11 197 102 115 49 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC060589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000038927   ⟹   ENSRNOP00000032635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1442,893,942 - 42,897,136 (+)Ensembl
Rnor_6.0 Ensembl1444,524,416 - 44,527,613 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1444,526,142 - 44,526,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076245   ⟹   ENSRNOP00000068363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1444,524,753 - 44,527,415 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1444,526,408 - 44,527,140 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1444,526,408 - 44,527,208 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1444,524,849 - 44,526,619 (+)Ensembl
RefSeq Acc Id: NM_001007598   ⟹   NP_001007599
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,247,590 - 43,250,784 (+)NCBI
mRatBN7.21442,893,945 - 42,897,140 (+)NCBI
Rnor_6.01444,524,419 - 44,527,613 (+)NCBI
Rnor_5.01444,343,832 - 44,347,026 (+)NCBI
RGSC_v3.41476,274,247 - 76,274,951 (-)RGD
Celera1442,044,585 - 42,047,779 (+)RGD
Sequence:
RefSeq Acc Id: XM_063272990   ⟹   XP_063129060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81443,247,536 - 43,250,784 (+)NCBI
RefSeq Acc Id: NP_001007599   ⟸   NM_001007598
- UniProtKB: P17077 (UniProtKB/Swiss-Prot),   Q6P9U5 (UniProtKB/TrEMBL),   A6JDE3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032635   ⟸   ENSRNOT00000038927
Ensembl Acc Id: ENSRNOP00000068363   ⟸   ENSRNOT00000076245
RefSeq Acc Id: XP_063129060   ⟸   XM_063272990
- Peptide Label: isoform X1
- UniProtKB: P17077 (UniProtKB/Swiss-Prot),   A6JDE3 (UniProtKB/TrEMBL),   Q6P9U5 (UniProtKB/TrEMBL)
Protein Domains
Large ribosomal subunit protein uL6 alpha-beta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17077-F1-model_v2 AlphaFold P17077 1-192 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699316
Promoter ID:EPDNEW_R9841
Type:multiple initiation site
Name:LOC100360449_1
Description:ribosomal protein L9-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01444,524,417 - 44,524,477EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62049 AgrOrtholog
BioCyc Gene G2FUF-15744 BioCyc
Ensembl Genes ENSRNOG00000026716 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000028449 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000030476 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000038927 ENTREZGENE
  ENSRNOT00000038927.6 UniProtKB/Swiss-Prot
  ENSRNOT00000042201.6 UniProtKB/Swiss-Prot
  ENSRNOT00000052231.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.930.12 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6888030 IMAGE-MGC_LOAD
  IMAGE:7304371 IMAGE-MGC_LOAD
InterPro Ribosomal_L6 UniProtKB/Swiss-Prot
  Ribosomal_L6_a/b-dom UniProtKB/Swiss-Prot
  Ribosomal_L6_a/b-dom_sf UniProtKB/Swiss-Prot
  Ribosomal_L6_CS2 UniProtKB/Swiss-Prot
KEGG Report rno:29257 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105798 IMAGE-MGC_LOAD
  MGC:72949 IMAGE-MGC_LOAD
NCBI Gene 29257 ENTREZGENE
PANTHER LARGE RIBOSOMAL SUBUNIT PROTEIN UL6 UniProtKB/Swiss-Prot
  PTHR11655 UniProtKB/Swiss-Prot
Pfam Ribosomal_L6 UniProtKB/Swiss-Prot
PhenoGen Rpl9 PhenoGen
PIRSF Ribosomal_L6 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_L6_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000026716 RatGTEx
  ENSRNOG00000028449 RatGTEx
  ENSRNOG00000030476 RatGTEx
Superfamily-SCOP SSF56053 UniProtKB/Swiss-Prot
UniProt A6JDE3 ENTREZGENE, UniProtKB/TrEMBL
  P17077 ENTREZGENE
  Q6P9U5 ENTREZGENE, UniProtKB/TrEMBL
  RL9_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-12 Rpl9  ribosomal protein L9  LOC100362838  ribosomal protein L9-like  Data merged from RGD:2323940 737654 PROVISIONAL
2010-05-06 LOC100362838  ribosomal protein L9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Rpl9  ribosomal protein L9      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other 20-23 copies of the gene 61736
gene_protein consists of 192 amino acids and has an Mr of 21879 61736