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Gene: Slfn4 (schlafen family member 4) Rattus norvegicus

Analyze

Symbol:

Slfn4 (Ensembl: Slfn4l1)

Name:

schlafen family member 4 (Ensembl:schlafen family member 4 like 1)

RGD ID:

620455

Description:

Predicted to enable RNA nuclease activity and ribosome binding activity. Involved in lung alveolus development. Predicted to be located in cytosol and nucleus. Orthologous to several human genes including SLFN12 (schlafen family member 12); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cdk107; LOC102553282; schlafen 3; schlafen 4; Slfn3; uncharacterized LOC102553282

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLFN12 (schlafen family member 12)	HGNC	Ensembl, HomoloGene, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Slfn4 (schlafen 4)	RGD	RGD
Pan paniscus (bonobo/pygmy chimpanzee):	SLFN12 (schlafen family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLFN12 (schlafen family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLFN12 (schlafen family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLFN12L (schlafen family member 12 like)	HGNC	Ensembl, OrthoDB, Panther
Homo sapiens (human):	SLFN5 (schlafen family member 5)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	SLFN12 (schlafen family member 12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slfn4 (schlafen 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slfn3 (schlafen 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLFN12L (schlafen family member 12 like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLFN12L (schlafen family member 12 like)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)

Candidate Gene For:

Bp312

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	68,492,135 - 68,515,674 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	68,508,916 - 68,513,991 (+)	Ensembl				GRCr8
mRatBN7.2	10	67,994,601 - 68,018,141 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	67,994,632 - 68,018,138 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	10	68,000,028 - 68,018,138 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	72,614,701 - 72,638,151 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	72,120,085 - 72,143,535 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	67,584,123 - 67,607,575 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	70,411,686 - 70,435,162 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,411,738 - 70,435,156 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	70,045,721 - 70,069,233 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	71,277,765 - 71,301,183 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	66,943,545 - 66,961,594 (+)	NCBI		Celera
RGSC_v3.1	10	71,291,014 - 71,314,467 (+)	NCBI
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,6-di-tert-butyl-4-methylphenol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (EXP)

arsane (ISO)

arsenic atom (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

bromuconazole (EXP)

Butylbenzyl phthalate (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

cyclophosphamide (ISO)

DDT (EXP)

dibenzofurans (ISO)

dorsomorphin (ISO)

entinostat (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

phenylarsine oxide (ISO)

phenylmercury acetate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic signaling pathway (ISO)

lung alveolus development (IEP)

response to bacterium (ISO)

rRNA catabolic process (ISO)

Cellular Component

cytosol (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

ribosome binding (ISO)

RNA nuclease activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Gene expression profiling in lung fibroblasts reveals new players in alveolarization.	Boucherat O, etal., Physiol Genomics. 2007 Dec 19;32(1):128-41. Epub 2007 Oct 2.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Schlafen, a new family of growth regulatory genes that affect thymocyte development.	Schwarz DA, etal., Immunity 1998 Nov;9(5):657-68.
6.	Human T-cell leukemia virus type 1 Tax protein stimulates the interferon-responsive enhancer element via NF-kappaB activity.	Shimizu T, etal., FEBS Lett 2003 Mar 27;539(1-3):73-7.

Additional References at PubMed

PMID:19228883	PMID:19703412	PMID:19996332	PMID:20299602	PMID:21596996	PMID:22906252	PMID:23012479	PMID:24089532	PMID:24244554

Genomics

Comparative Map Data

Slfn4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	68,492,135 - 68,515,674 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	68,508,916 - 68,513,991 (+)	Ensembl				GRCr8
mRatBN7.2	10	67,994,601 - 68,018,141 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	67,994,632 - 68,018,138 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	10	68,000,028 - 68,018,138 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	72,614,701 - 72,638,151 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	72,120,085 - 72,143,535 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	67,584,123 - 67,607,575 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	70,411,686 - 70,435,162 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,411,738 - 70,435,156 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	70,045,721 - 70,069,233 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	71,277,765 - 71,301,183 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	66,943,545 - 66,961,594 (+)	NCBI		Celera
RGSC_v3.1	10	71,291,014 - 71,314,467 (+)	NCBI
Cytogenetic Map	10	q26	NCBI

SLFN12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	35,410,922 - 35,433,174 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	35,409,347 - 35,433,475 (-)	Ensembl			hg38	GRCh38
GRCh37	17	33,737,941 - 33,760,193 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	30,762,192 - 30,783,656 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	30,648,230 - 30,669,690 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	29,923,102 - 29,944,498 (-)	NCBI		HuRef
CHM1_1	17	33,802,400 - 33,823,865 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	36,351,811 - 36,381,711 (-)	NCBI		T2T-CHM13v2.0

Slfn4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	83,066,001 - 83,081,042 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	83,066,012 - 83,081,042 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	83,175,172 - 83,190,216 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	83,175,186 - 83,190,216 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	82,988,688 - 83,003,718 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	82,991,381 - 83,006,411 (+)	NCBI		MGSCv36	mm8
Celera	11	92,764,702 - 92,779,735 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	50.3	NCBI

SLFN12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	29,039,285 - 29,068,736 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	30,920,265 - 30,949,716 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	21,359,252 - 21,384,308 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	21,652,566 - 21,676,326 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	21,652,566 - 21,676,326 (+)	Ensembl			panPan2	panpan1.1

SLFN12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	38,140,071 - 38,146,347 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	37,363,941 - 37,370,841 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	38,951,413 - 38,958,375 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	9	37,735,395 - 37,742,344 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	38,020,063 - 38,027,019 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	38,107,811 - 38,114,775 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SLFN12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	28,883,628 - 28,913,393 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	28,883,886 - 28,912,880 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666075	1,067,844 - 1,099,183 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Slfn4
169 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	177
Count of miRNA genes:	137
Interacting mature miRNAs:	160
Transcripts:	ENSRNOT00000055955, ENSRNOT00000071656, ENSRNOT00000072281
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	67439473	73950209	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	47489017	69161158	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	52162433	75582749	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	56868440	76129113	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	67476608	73695498	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	67476608	73695498	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Wox51

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	68,011,827 - 68,012,018 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,428,844 - 70,429,034	NCBI	Rnor6.0
Rnor_5.0	10	70,062,921 - 70,063,111	UniSTS	Rnor5.0
RGSC_v3.4	10	71,294,871 - 71,295,061	UniSTS	RGSC3.4
Celera	10	66,955,281 - 66,955,471	UniSTS
Cytogenetic Map	10	q26	UniSTS

D10Chm244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,997,294 - 67,997,472 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,414,348 - 70,414,525	NCBI	Rnor6.0
Rnor_5.0	10	70,048,485 - 70,048,662	UniSTS	Rnor5.0
RGSC_v3.4	10	71,280,375 - 71,280,552	UniSTS	RGSC3.4
Cytogenetic Map	10	q26	UniSTS

D10Chm179

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,993,369 - 67,993,618 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,415,748 - 70,415,996	NCBI	Rnor6.0
Rnor_6.0	10	70,410,423 - 70,410,671	NCBI	Rnor6.0
Rnor_5.0	10	70,049,790 - 70,050,072	UniSTS	Rnor5.0
Rnor_5.0	10	70,041,305 - 70,041,553	UniSTS	Rnor5.0
RGSC_v3.4	10	71,276,450 - 71,276,698	UniSTS	RGSC3.4
RGSC_v3.4	10	71,281,775 - 71,282,023	UniSTS	RGSC3.4
Celera	10	66,942,185 - 66,942,433	UniSTS
Cytogenetic Map	10	q26	UniSTS

D10Mco86

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,993,370 - 67,993,646 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,415,749 - 70,416,024	NCBI	Rnor6.0
Rnor_6.0	10	70,410,424 - 70,410,699	NCBI	Rnor6.0
Rnor_5.0	10	70,049,791 - 70,050,100	UniSTS	Rnor5.0
Rnor_5.0	10	70,041,306 - 70,041,581	UniSTS	Rnor5.0
RGSC_v3.4	10	71,276,451 - 71,276,726	UniSTS	RGSC3.4
RGSC_v3.4	10	71,281,776 - 71,282,051	UniSTS	RGSC3.4
Celera	10	66,942,186 - 66,942,461	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH132185

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	68,017,879 - 68,018,082 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,434,896 - 70,435,098	NCBI	Rnor6.0
Rnor_5.0	10	70,068,973 - 70,069,175	UniSTS	Rnor5.0
RGSC_v3.4	10	71,300,923 - 71,301,125	UniSTS	RGSC3.4
Celera	10	66,961,334 - 66,961,536	UniSTS
Cytogenetic Map	10	q26	UniSTS

AU046963

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,993,465 - 67,993,640 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,415,844 - 70,416,018	NCBI	Rnor6.0
Rnor_6.0	10	70,410,519 - 70,410,693	NCBI	Rnor6.0
Rnor_5.0	10	70,049,886 - 70,050,094	UniSTS	Rnor5.0
Rnor_5.0	10	70,041,401 - 70,041,575	UniSTS	Rnor5.0
RGSC_v3.4	10	71,276,546 - 71,276,720	UniSTS	RGSC3.4
RGSC_v3.4	10	71,281,871 - 71,282,045	UniSTS	RGSC3.4
Celera	10	66,942,281 - 66,942,455	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	156	91	90	59	92	59	6	356	192	11	135	81	92	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF168795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y17327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000078046 ⟹ ENSRNOP00000074064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	68,000,028 - 68,018,138 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,411,738 - 70,435,156 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	70,412,352 - 70,417,724 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079325 ⟹ ENSRNOP00000072460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,994,632 - 68,018,138 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,417,108 - 70,435,156 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087606 ⟹ ENSRNOP00000073148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	68,508,916 - 68,513,991 (+)	Ensembl
mRatBN7.2 Ensembl	10	68,011,383 - 68,016,458 (+)	Ensembl

RefSeq Acc Id:

NM_053687 ⟹ NP_446139

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,492,220 - 68,515,673 (+)	NCBI
mRatBN7.2	10	67,994,685 - 68,018,140 (+)	NCBI
Rnor_6.0	10	70,411,738 - 70,435,156 (+)	NCBI
Rnor_5.0	10	70,045,721 - 70,069,233 (+)	NCBI
RGSC_v3.4	10	71,277,765 - 71,301,183 (+)	RGD
Celera	10	66,943,545 - 66,961,594 (+)	RGD

Sequence:

show sequence

CTCTGGACAAAGGAAAGGCCAGGAAGCCTACCAGTGCTCTGAGCTTCAGGGAACACAGCTTCTG
GGACACAGAGAATCTTGACTCCTTGGCGTCCTCATAGCTATTCTCTCAGAGTACGGGCTGTTGA
GAACTTGGAGACTCTGAAAGCTTGGGGAGGACACACAACCTGAAGTTCTCTCTTTTGAACACCC
TGGACTTCAAGCAACCCAGATTCCGAGCCAAGAATCTGAAGTCGGACAGAGTTGACGAGTTATC
TGAAGGACAGATGGCTGGAAACCTCCCACGGTTGGTGGAAGATGTAAATCCACAGACATTCACA
GAGCCCTCTGTTCAGCTCAAGTGTCCAGGGAATATTTTTCAGGGAGGACGGCATGCCAAGCCAG
GAAGCTGGAAGGATTCACAGCATATAAAATGGTTAGCTTTTGTCATACTAGGGAAGAACTGGAA
AGCAGCATCAAGACAGACAGAAGAAACAGAGAAAGTGCTAGAATTTTGACCGAGTGTTCCTGAA
CAGTGCTCAAATATGAAAATCAAGGTTCCAGAGCATAGAAGCCATACCAGGAGGGAGCTGGAGA
ATGGAGAACACCCATGTTAAAGCAGGAAAGGGGCCAGGCTGTGCCTCCTGGAAAATGCTTTTCT
GACCCTGACTGTCAACCCCAACAACTTCCACATAAGAAAGGGGAGGGGATGGTATCATAGGACA
GAATCAGATGAAGTGAACCAAGCCAGTCTCAGAATGACAAATCTCATACCATTTCCTCTCAGTT
GTGGTTCTTAGAGGGTATATATTACACATCTGAGAAACCGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTAAAACATGAAAGTAGAGCTGAATTTATCTAAGGGAGCAT
AAGGGACAGATGGGGCGGTGGCCTCAAAGACGTTGGACAGGAGTGCACACTCAGTGTACAGCAT
TAAGTTAAATGTCCTTTTGTAGGGCTACAGTATTGGCTCAGAGTGAGGTATCTTGTTGCTCTTA
TAGAGAATAGGGTCCAATTCCTAGCACTTACATAGGAGCTTACAAGCACCCTATTTCCAGCCTC
GAGGGATCCAACAACTCTTCAGACCTTCAGTGGTATCACGCATCTCTGTGTCACGCGTACATAT
ATGCAGACAAAACACTCATACACATAAAAATATAAAATACATAATTAGGCTAAAATATTTTAAA
CTTTCTTGTAAAACACAGTGCCGTGAACGTAGAATGCATATACACAATGATGTTTTTTAATCCA
AAATAGAAGAGGATCGTACAGTCATGACTGAAAATTAGAAAATTTAGTGAGTGTTCATTATTGT
AGTCAGTTCAAAATTGTCCCAACAGTCCCTAAACAAATATCACCTCTGACCTTCTCACTTGCTC
ATCCACAGCAACTCAAATGGTTGTGCTGTCTGGTAACGCTGGCCTCTAACTGGTTAGGTCCTTC
TGTAATGACTGTTTCTGTCTTGCAGGAAAGGATTTCATCTGGGAAGCAGAGACAGTAACTGCAA
AATGAGCATCACTGTCGATCAGGACACAGACTACGCTGAACTGGTTCTGTCTATAGGAGAAATC
ACACTTGGAGAGAAGACCAGGAAATCAATGAAAGATAGTCAACGGAGAAAAAGAGAGGCCAAAA
CTTTCCAACAGGCTGTATGTACCCTGTTGAATTCTGGAGGAGGCGTGGCCAAGGCTCGCATTAA
AAATCAAAACTACGACTTCAGCCGAGATGGAGTAGGACAGGATTTGGAAAATTTCTTACCTCAT
ATCCTGGATTTTCCTCATGAATACCTAGACTTCAAGCAGGTCAAAGACTACTTTCTCATGTTTG
TGAAAGCATGGAAGCTGAAACAGAAAGGTCCAGGGATCACCACCTTGAAAACCAACTTGTACAT
CAGAAGCATCTCATCCTCAATTGAACTGAAAGCAGTCAATGCAGTGAAGTTCCTCAAATCCAGG
AAATGTTCTAAAGGGAGATCAGATTCCAGACTGAGTTCACCCGGAACAATCGTCTGTAATGAAG
TACTAAATGAATGTCTTAACTTGTTTAACAGAGACTGTTTTACCTGTAAAGAGAAATTCTGTTT
CACTAAAGCCACACATGCTGAAGTAAAATTGACTCCTAAGGAAAACATTTTAGAAATCCTCCCT
CAAACTGTTTCTTCATTTGCAAACGCGGATGGGGGATATTTGTTCATTGGTTTGGATGGCAAAA
CCCAGGAAATTATTGGCTTTGAAGCAGAGAAGAGCGACCTTGTGCATCTAGAGAGTGAAATAGA
AAAGTGCATCCGACAGCTGCCTGTCACTCACTTCTGTGAGGAGAGGGAGAAGATCAAGTACACG
TGCAAATTCATGGAAGTGCACAAACCCGGAGCTGCGTGTTCATTCGTGTGTGCGCTCAGAGTGG
AGAGATTCTGCTGTGCAGTGTTCGCTGCAGAGCCCGAATCCTGGCACGTGGAAGACAGCTGTGT
GAAGAGGTTTACCGCAGAGGACTGGGTGAAACGCCAGATGGATGGCCCAGCATGTTTCTCCAAG
CAAGATAAAGGCCCTCTTCAGTCAAGCCGACTGCCACACAGTCCCCGTAGCTGCTGTCCTGACA
ATCCTGATGCTCTTCAGCAGAGTGCTGGCCTTCCAGTGATATCTGGAAAGGTGATAAGCTCTCC
AGAAGCCCTCTGCGGGAAACTGTTCTCAACACAGGAAGCGCATGAGCAGTTGCTCTGGGCACAG
TTGGACTCGCTTCCTAAAGGAACGCTGGTCGTCACTAAGAGATGGGCTTTGGATCTACCCTTGC
AAGACAAGCACGGAGTCATCTTGGATACGCTTCATATTCCCCAGGACAGTCTCCTGACCCTGCA
TGGCTTTGTCCTGGGAGGTGAAGACCTGGAGGATGACAGCACTCTTCTGAGGGAACTAGGCGCT
GAGTTAAAGGGCTATTATAAACAAACCGCCGTAACACTAAAGCAGACGTTGGCAAACCATGGTA
GTTACACTGAGAAAATAGGTATCGCGATAAAGATAACATACTTGGGTCATAATAAGGCAGTGTC
CCTTTATGATTCAAGCTCGAAAATACACTATCCCACAAAATATTATCTGACAACCGAGACAGCA
AAGAACTTAGAAAAAGCTCTTGCTGAAATCTTAGGGAGTCGTGAGTCTTTCTACAGTTTACCTA
GGCAAAACTGTAGTGATCATTTTATCTTTGCGTTTTTTCTTTCTTTTTCTTTTTTACTTGTTTT
TCTTTTTTGGAGCTGGGGACTGAACCCAGAGCCTTGAACTTACTAGGCAAGCGCTCTACCACTG
AGCTAAATCCCCTACCCTTATCTTTGCGTTTTTAAAGACGTGATGTTATATAGTTTACTCTTTG
AAGAATTATCCTAACTCCTGTTCAAGGCTGGCTTTGACATAAAAGAAAAAATGGTGTATGGCAC
AGTGATATTTTACAATATGTAGGTTCTTCAATTCTATAAAAATACGAAAAATGTGACATTGAGC
TTTATAGAAATAAAACCAATTCTGGAAAAGGAATTGGCCATTGGAGCTGGCAGTGACAAGCTAA
GCATTAAGAACATGTCCCTGAGCCATGCACCTGGCCCCTGCCTTTGATTCCAGCACCTGGAGGA
AGGCAGAACCTCCTGGTCTATGTAAGAGTTCCAGGACAGCCACAGCTATGCAGTGAGAGCCTCT
CTCAACATTTGTTAATTAATTAGCTAATTAATTAATTAAGAAGTGTTTCTCCTCATCTGCATAG
CCATTCCTTCTTGCTAATGAAATGCATGGTGCCTTTAATGCACAGGAGACACTGCTTCCTAGAG
AAGTCTAGTAAAGAAAATGTTGAAATACATGGATTAATATGGAAAAGTTTTTGTCATGGTGTTA
CTATCCAGCCTTGTGTGTTATTGTTGTTAAATACTTAATTTGTATGTGACAACCTGAGGAAAGG
CTTTCCACAGAGGCAAAGGTCAGAATATGTGGAGATTAAATGGCAAATGCTCACAACATCATGT
ACTATATACAAGAGATTTCCAGAAAGATCAAAGAGACATTGAAACTGAATACAATTATTTTCTG
TGAGGAGAGTACATTCTGTCTTAAAGGAAGACATTGTATCTCTTGGATGGAACACAGTCCACAA
ATCCTAGGCCATGCTAGCAGTCTCTATGGGGCTATGTATAGCAAGGCATCTATTTTTCTATTTG
AACCCTCATTTCCTACGAGGTATCGATAATAGGATGTGAGATGGTGATATTGCTCGTTTAATCA
TTGATGTGCTGTATTTTTCACGTTCATATTGTTGTGTTGTTTGTGCTGTAAATAACGCCTGTAA
AGGTATTTACAGCATTGGGTTTTCATTAGAGTATTACTCTTTATTTGAGATGTTGGTATTTCCT
TCATAAAGAAAGAAGTGTCTTTATTGTACAGTGTACATTTGTGAAGGATAAACTCTCTCAACAT
TCGGCCCTTAGCGGCTATTGATAAGCAGTGGTAACCTGTTGTGACTTTTGATAGAGTTTATCAA
AAGACCGGTTGCCCTTCACGAGAGGTCTGATGACTGGGCTATGAGCTGGGTGCTCACAGCAACC
AATCCTCTTAGCCATGTTTTCTCTTTTGATCTATTTCTTTATCGATATGATTTATTTTTAAAAT
CTACATCGTTTTTCATCTACTCTGTTCTCAGAACTGTGTTGTTATGAATATAATTCTTCTGCTT
GTATCTTTCTCTGATGAATCTTCATTGTCTGACTTGGGGAGTTCTACTTACCAAACCTTGGACG
CCAAACAAATGTTCCACTCTTTTAATATGTTTCTAAAATAAATGATCTTTACAAAACATC

hide sequence

RefSeq Acc Id:

XM_008767933 ⟹ XP_008766155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,492,135 - 68,515,674 (+)	NCBI
mRatBN7.2	10	67,994,601 - 68,018,141 (+)	NCBI
Rnor_6.0	10	70,411,686 - 70,435,162 (+)	NCBI

Sequence:

show sequence

ACATATTGGCTCTCCCTCCACATTTGCATTGCTCTCATCACCCTTGCTGCCTCTCTGGACAAAG
GAAAGGCCAGGAAGCCTACCAGTGCTCTGAGCTTCAGGGAACACAGCTTCTGGGACACAGAGAA
TCTTGACTCCTTGGCGTCCTCATAGCTATTCTCTCAGAGTACGGGCTGTTGAGAACTTGGAGAC
TCTGAAAGCTTGGGTTCGAGTCACATTGGCACAAAGCACCTAAGTTTCCTGCTATACTACGTGG
AGTGAGGAAATGCTCAAAGTCTCAGAGTGGTGACTCAGACTAACTGAAAAACCTAGCCACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCGGGCTTACTCCGTTTTACCTCGGCC
AGCTTTCCCACTGTGGCTATACATATTGGCTCTCCCTCCACATTCGCTGTGCTCTTGAATTCTC
ATCACCCTTGCTGCCTCTCTGGACAAAGGAAAGGCCTGGAAGCCTACCAGTGCTCTGAGCTTCA
GGGAACACAGCTTCTGGGACACAGAGAATCTTGACTCCTTGGCGTCCTCATAGCTATTCTCTCA
GAGTACGGGCTGTTGAGAACTTGGAGACTCTGAAAGCTTGGGGAGGACACACAACCTGAAGTTC
TCTCTTTTGAACACCCTGGACTTCAAGCAACCCAGATTCCGAGCCAAGAATCTGAAGTCGGACA
GAGTTGACGAGTTATCTGAAGGACAGATGGCTGGAAACCTCCCACGGTTGGTGGAAGATGTAAA
TCCACAGACATTCACAGAGCCCTCTGTTCAGCTCAAGTGTCCAGGGAATATTTTTCAGGGAGGA
CGGCATGCCAAGCCAGGAAGCTGGAAGGATTCACAGCATATAAAATGGTTGCTTTTGTCATACT
GGGAAGAACTGGAAAGCAGCATCAAGACAGACAGAAGAAACAGAGAAAGTGCTAGAATTTTGAC
CGAGTGTTCCTGAACAGTGCTCAAATATGAAAATCAAGGTTCCAGAGCATAGAAGCCATACCAG
GAGGGAGCTGGAGAATGGAGAACACCCATGTTAAAGCAGGAAAGGGGCCAGGCTGTGCCTCCTG
GAAAATGCTTTTCTGACCCTGACTGTCAACCCCAACAACTTCCACATAAGAAAGGGGAGGGGAT
GGTATCATAGGACAGAATCAGATGAAGTGAACCAAGCCAGTCTCAGAATGACAAATCTCATACC
ATTTCCTCTCAGTTGTGGTTCTTAGAGGGTATATATTACACATCTGAGAAACCGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACATGAAAGTAGAGCTGAAT
TTATCTAAGGGAGCATAAGGGACAGATGGGGCGGTGGCCTCAAAGACGTTGGACAGGAGTGCAC
ACTCAGTGTACAGCATTAAGTTAAATGTCCTTTTGTAGGGCTACAGTATTGGCTCAGAGTGAGG
TATCTTGTTGCTCTTATAGAGAATAGGGTCCAATTCCTAGCACTTACATAGGAGCTTACAAGCA
CCCTATTTCCAGCCTCGAGGGATCCAACAACTCTTCAGACCTTCAGTGGTATCACGCATCTCTG
TGTCACGCGTACATATATGCAGACAAAACACTCATACACATAAAAATATAAAATACATAATTAG
GCTAAAATATTTTAAACTTTCTTGTAAAACACAGTGCCGTGAACGTAGAATGCATATACACAAT
GATGTTTTTTAATCCAAAATAGAAGAGGATCGTACAGTCATGACTGAAAATTAGAAAATTTAGT
GAGTGTTCATTATTGTAGTCAGTTCAAAATTGTCCCAACAGTCCCTAAACAAATATCACCTCTG
ACCTTCTCACTTGCTCATCCACAGCAACTCAAATGGTTGTGCTGTCTGGTAACGCTGGCCTCTA
ACTGGTTAGGTCCTTCTGTAATGACTGTTTCTGTCTTGCAGGAAAGGATTTCATCTGGGAAGCA
GAGACAGTAACTGCAAAATGAGCATCACTGTCGATCAGGACACAGACTACGCTGAACTGGTTCT
GTCTATAGGAGAAATCACACTTGGAGAGAAGACCAGGAAATCAATGAAAGATAGTCAACGGAGA
AAAAGAGAGGCCAAAACTTTCCAACAGGCTGTATGTACCCTGTTGAATTCTGGAGGAGGCGTGG
CCAAGGCTCGCATTAAAAATCAAAACTACGACTTCAGCCGAGATGGAGTAGGACAGGATTTGGA
AAATTTCTTACCTCATATCCTGGATTTTCCTCATGAATACCTAGACTTCAAGCAGGTCAAAGAC
TACTTTCTCATGTTTGTGAAAGCATGGAAGCTGAAACAGAAAGGTCCAGGGATCACCACCTTGA
AAACCAACTTGTACATCAGAAGCATCTCATCCTCAATTGAACTGAAAGCAGTCAATGCAGTGAA
GTTCCTCAAATCCAGGAAATGTTCTAAAGGGAGATCAGATTCCAGACTGAGTTCACCCGGAACA
ATCGTCTGTAATGAAGTACTAAATGAATGTCTTAACTTGTTTAACAGAGACTGTTTTACCTGTA
AAGAGAAATTCTGTTTCACTAAAGCCACACATGCTGAAGTAAAATTGACTCCTAAGGAAAACAT
TTTAGAAATCCTCCCTCAAACTGTTTCTTCATTTGCAAACGCGGATGGGGGATATTTGTTCATT
GGTTTGGATGGCAAAACCCAGGAAATTATTGGCTTTGAAGCAGAGAAGAGCGACCTTGTGCATC
TAGAGAGTGAAATAGAAAAGTGCATCCGACAGCTGCCTGTCACTCACTTCTGTGAGGAGAGGGA
GAAGATCAAGTACACGTGCAAATTCATGGAAGTGCACAAACCCGGAGCTGCGTGTTCATTCGTG
TGTGCGCTCAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGAGCCCGAATCCTGGCACG
TGGAAGACAGCTGTGTGAAGAGGTTTACCGCAGAGGACTGGGTGAAACGCCAGATGGATGGCCC
AGCATGTTTCTCCAAGCAAGATAAAGGCCCTCTTCAGTCAAGCCGACTGCCACACAGTCCCCGT
AGCTGCTGTCCTGACAATCCTGATGCTCTTCAGCAGAGTGCTGGCCTTCCAGTGATATCTGGAA
AGGTGATAAGCTCTCCAGAAGCCCTCTGCGGGAAACTGTTCTCAACACAGGAAGCGCATGAGCA
GTTGCTCTGGGCACAGTTGGACTCGCTTCCTAAAGGAACGCTGGTCGTCACTAAGAGATGGGCT
TTGGATCTACCCTTGCAAGACAAGCACGGAGTCATCTTGGATACGCTTCATATTCCCCAGGACA
GTCTCCTGACCCTGCATGGCTTTGTCCTGGGAGGTGAAGACCTGGAGGATGACAGCACTCTTCT
GAGGGAACTAGGCGCTGAGTTAAAGGGCTATTATAAACAAACCGCCGTAACACTAAAGCAGACG
TTGGCAAACCATGGTAGTTACACTGAGAAAATAGGTATCGCGATAAAGATAACATACTTGGGTC
ATAATAAGGCAGTGTCCCTTTATGATTCAAGCTCGAAAATACACTATCCCACAAAATATTATCT
GACAACCGAGACAGCAAAGAACTTAGAAAAAGCTCTTGCTGAAATCTTAGGGAGTCGTGAGTCT
TTCTACAGTTTACCTAGGCAAAACTGTAGTGATCATTTTATCTTTGCGTTTTTTCTTTCTTTTT
CTTTTTTACTTGTTTTTCTTTTTTGGAGCTGGGGACTGAACCCAGAGCCTTGAACTTACTAGGC
AAGCGCTCTACCACTGAGCTAAATCCCCTACCCTTATCTTTGCGTTTTTAAAGACGTGATGTTA
TATAGTTTACTCTTTGAAGAATTATCCTAACTCCTGTTCAAGGCTGGCTTTGACATAAAAGAAA
AAATGGTGTATGGCACAGTGATATTTTACAATATGTAGGTTCTTCAATTCTATAAAAATACGAA
AAATGTGACATTGAGCTTTATAGAAATAAAACCAATTCTGGAAAAGGAATTGGCCATTGGAGCT
GGCAGTGACAAGCTAAGCATTAAGAACATGTCCCTGAGCCATGCACCTGGCCCCTGCCTTTGAT
TCCAGCACCTGGAGGAAGGCAGAACCTCCTGGTCTATGTAAGAGTTCCAGGACAGCCACAGCTA
TGCAGTGAGAGCCTCTCTCAACATTTGTTAATTAATTAGCTAATTAATTAATTAAGAAGTGTTT
CTCCTCATCTGCATAGCCATTCCTTCTTGCTAATGAAATGCATGGTGCCTTTAATGCACAGGAG
ACACTCTTCCTAGAGAAGTCAGTAAAGAAAATGTTGAAATACATGGATTAATATGGAAAAGTTT
TTGTCATGGTGTTACTATCCAGCCTTGTGTGTTATTGTTGTTAAATACTTAATTTGTATGTGAC
AACCTGAGGAAAGGCTTTCCACAGAGGCAAAGGTCAGAATATGTGGAGATTAAATGGCAAATGC
TCACAACATCATGTACTATATACAAGAGATTTCCAGAAAGATCAAAGAGACATTGAAACTGAAT
ACAATTATTTTCTGTGAGGAGAGTACATTCTGTCTTAAAGGAAGACATTGTATCTCTTGGATGG
AACACAGTCCACAAATCCTAGGCCATGCTAGCAGTCTCTATGGGGCTATGTATAGCAAGGCATC
TATTTTTCTATTTGAACCCTCATTTCCTACGAGGTATCGATAATAGGATGTGAGATGGTGATAT
TGCTCGTTTAATCATTGATGTGCTGTATTTTTCACGTTCATATTGTTGTGTTGTTTGTGCTGTA
AATAACGCCTGTAAAGGTATTTACAGCATTGGGTTTTCATTAGAGTATTACTCTTTATTTGAGA
TGTTGGTATTTCCTTCATAAAGAAAGAAGTGTCTTTATTGTACATGTACATTTGTGAAGGATAA
ACTCTCTCAACATTCGGCCCTTAGCGGCTATTGATAAGCAGTGGTAACCTGTTGTGACTTTTGA
TAGAGTTTATCAAAAGACCGGTTGCCCTTCACGAGAGGTCTGATGACTGGGCTATGAGCTGGGT
GCTCACAGCAACCAATCCTCTTAGCCATGTTTTCTCTTTTGATCTATTTCTTTATCGATATGAT
TTATTTTTAAAATCTACATCGTTTTTCATCTACTCTGTTCTCAGAACTGTGTTGTTATGAATAT
AATTCTTCTGCTTGTATCTTTCTCTGATGAATCTTCATTGTCTGACTTGGGGAGTTCTACTTAC
CAAACCTTGGACGCCAAACAAATGTTCCACTCTTTTAATATGTTTCTAAAATAAATGATCTTTA
CAAAACATCATCAAA

hide sequence

RefSeq Acc Id:

XM_017596949 ⟹ XP_017452438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,492,135 - 68,515,674 (+)	NCBI
mRatBN7.2	10	67,994,601 - 68,018,141 (+)	NCBI
Rnor_6.0	10	70,411,686 - 70,435,162 (+)	NCBI

Sequence:

show sequence

ACATATTGGCTCTCCCTCCACATTTGCATTGCTCTCATCACCCTTGCTGCCTCTCTGGACAAAG
GAAAGGCCAGGAAGCCTACCAGTGCTCTGAGCTTCAGGGAACACAGCTTCTGGGACACAGAGAA
TCTTGACTCCTTGGCGTCCTCATAGCTATTCTCTCAGAGTACGGGCTGTTGAGAACTTGGAGAC
TCTGAAAGCTTGGGTTCGAGTCACATTGGCACAAAGCACCTAAGTTTCCTGCTATACTACGTGG
AGTGAGGAAATGCTCAAAGTCTCAGAGTGGTGACTCAGACTAACTGAAAAACCTAGCCACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCGGGCTTACTCCGTTTTACCTCGGCC
AGCTTTCCCACTGTGGCTATACATATTGGCTCTCCCTCCACATTCGCTGTGCTCTTGAATTCTC
ATCACCCTTGCTGCCTCTCTGGACAAAGGAAAGGCCTGGAAGCCTACCAGTGCTCTGAGCTTCA
GGGAACACAGCTTCTGGGACACAGAGAATCTTGACTCCTTGGCGTCCTCATAGCTATTCTCTCA
GAGTACGGGCTGTTGAGAACTTGGAGACTCTGAAAGCTTGGGGAGGACACACAACCTGAAGTTC
TCTCTTTTGAACACCCTGGACTTCAAGCAACCCAGATTCCGAGCCAAGAATCTGAAGTCGGACA
GAGTTGACGAGTTATCTGAAGGACAGATGGCTGGAAACCTCCCACGGTTGGTGGAAGATGTAAA
TCCACAGACATTCACAGAGCCCTCTGTTCAGCTCAAGTGTCCAGGGAATATTTTTCAGGGAGGA
CGGCATGCCAAGCCAGGAAGCTGGAAGGATTCACAGCATATAAAATGGAAAGGATTTCATCTGG
GAAGCAGAGACAGTAACTGCAAAATGAGCATCACTGTCGATCAGGACACAGACTACGCTGAACT
GGTTCTGTCTATAGGAGAAATCACACTTGGAGAGAAGACCAGGAAATCAATGAAAGATAGTCAA
CGGAGAAAAAGAGAGGCCAAAACTTTCCAACAGGCTGTATGTACCCTGTTGAATTCTGGAGGAG
GCGTGGCCAAGGCTCGCATTAAAAATCAAAACTACGACTTCAGCCGAGATGGAGTAGGACAGGA
TTTGGAAAATTTCTTACCTCATATCCTGGATTTTCCTCATGAATACCTAGACTTCAAGCAGGTC
AAAGACTACTTTCTCATGTTTGTGAAAGCATGGAAGCTGAAACAGAAAGGTCCAGGGATCACCA
CCTTGAAAACCAACTTGTACATCAGAAGCATCTCATCCTCAATTGAACTGAAAGCAGTCAATGC
AGTGAAGTTCCTCAAATCCAGGAAATGTTCTAAAGGGAGATCAGATTCCAGACTGAGTTCACCC
GGAACAATCGTCTGTAATGAAGTACTAAATGAATGTCTTAACTTGTTTAACAGAGACTGTTTTA
CCTGTAAAGAGAAATTCTGTTTCACTAAAGCCACACATGCTGAAGTAAAATTGACTCCTAAGGA
AAACATTTTAGAAATCCTCCCTCAAACTGTTTCTTCATTTGCAAACGCGGATGGGGGATATTTG
TTCATTGGTTTGGATGGCAAAACCCAGGAAATTATTGGCTTTGAAGCAGAGAAGAGCGACCTTG
TGCATCTAGAGAGTGAAATAGAAAAGTGCATCCGACAGCTGCCTGTCACTCACTTCTGTGAGGA
GAGGGAGAAGATCAAGTACACGTGCAAATTCATGGAAGTGCACAAACCCGGAGCTGCGTGTTCA
TTCGTGTGTGCGCTCAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGAGCCCGAATCCT
GGCACGTGGAAGACAGCTGTGTGAAGAGGTTTACCGCAGAGGACTGGGTGAAACGCCAGATGGA
TGGCCCAGCATGTTTCTCCAAGCAAGATAAAGGCCCTCTTCAGTCAAGCCGACTGCCACACAGT
CCCCGTAGCTGCTGTCCTGACAATCCTGATGCTCTTCAGCAGAGTGCTGGCCTTCCAGTGATAT
CTGGAAAGGTGATAAGCTCTCCAGAAGCCCTCTGCGGGAAACTGTTCTCAACACAGGAAGCGCA
TGAGCAGTTGCTCTGGGCACAGTTGGACTCGCTTCCTAAAGGAACGCTGGTCGTCACTAAGAGA
TGGGCTTTGGATCTACCCTTGCAAGACAAGCACGGAGTCATCTTGGATACGCTTCATATTCCCC
AGGACAGTCTCCTGACCCTGCATGGCTTTGTCCTGGGAGGTGAAGACCTGGAGGATGACAGCAC
TCTTCTGAGGGAACTAGGCGCTGAGTTAAAGGGCTATTATAAACAAACCGCCGTAACACTAAAG
CAGACGTTGGCAAACCATGGTAGTTACACTGAGAAAATAGGTATCGCGATAAAGATAACATACT
TGGGTCATAATAAGGCAGTGTCCCTTTATGATTCAAGCTCGAAAATACACTATCCCACAAAATA
TTATCTGACAACCGAGACAGCAAAGAACTTAGAAAAAGCTCTTGCTGAAATCTTAGGGAGTCGT
GAGTCTTTCTACAGTTTACCTAGGCAAAACTGTAGTGATCATTTTATCTTTGCGTTTTTTCTTT
CTTTTTCTTTTTTACTTGTTTTTCTTTTTTGGAGCTGGGGACTGAACCCAGAGCCTTGAACTTA
CTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCTACCCTTATCTTTGCGTTTTTAAAGACGTG
ATGTTATATAGTTTACTCTTTGAAGAATTATCCTAACTCCTGTTCAAGGCTGGCTTTGACATAA
AAGAAAAAATGGTGTATGGCACAGTGATATTTTACAATATGTAGGTTCTTCAATTCTATAAAAA
TACGAAAAATGTGACATTGAGCTTTATAGAAATAAAACCAATTCTGGAAAAGGAATTGGCCATT
GGAGCTGGCAGTGACAAGCTAAGCATTAAGAACATGTCCCTGAGCCATGCACCTGGCCCCTGCC
TTTGATTCCAGCACCTGGAGGAAGGCAGAACCTCCTGGTCTATGTAAGAGTTCCAGGACAGCCA
CAGCTATGCAGTGAGAGCCTCTCTCAACATTTGTTAATTAATTAGCTAATTAATTAATTAAGAA
GTGTTTCTCCTCATCTGCATAGCCATTCCTTCTTGCTAATGAAATGCATGGTGCCTTTAATGCA
CAGGAGACACTCTTCCTAGAGAAGTCAGTAAAGAAAATGTTGAAATACATGGATTAATATGGAA
AAGTTTTTGTCATGGTGTTACTATCCAGCCTTGTGTGTTATTGTTGTTAAATACTTAATTTGTA
TGTGACAACCTGAGGAAAGGCTTTCCACAGAGGCAAAGGTCAGAATATGTGGAGATTAAATGGC
AAATGCTCACAACATCATGTACTATATACAAGAGATTTCCAGAAAGATCAAAGAGACATTGAAA
CTGAATACAATTATTTTCTGTGAGGAGAGTACATTCTGTCTTAAAGGAAGACATTGTATCTCTT
GGATGGAACACAGTCCACAAATCCTAGGCCATGCTAGCAGTCTCTATGGGGCTATGTATAGCAA
GGCATCTATTTTTCTATTTGAACCCTCATTTCCTACGAGGTATCGATAATAGGATGTGAGATGG
TGATATTGCTCGTTTAATCATTGATGTGCTGTATTTTTCACGTTCATATTGTTGTGTTGTTTGT
GCTGTAAATAACGCCTGTAAAGGTATTTACAGCATTGGGTTTTCATTAGAGTATTACTCTTTAT
TTGAGATGTTGGTATTTCCTTCATAAAGAAAGAAGTGTCTTTATTGTACATGTACATTTGTGAA
GGATAAACTCTCTCAACATTCGGCCCTTAGCGGCTATTGATAAGCAGTGGTAACCTGTTGTGAC
TTTTGATAGAGTTTATCAAAAGACCGGTTGCCCTTCACGAGAGGTCTGATGACTGGGCTATGAG
CTGGGTGCTCACAGCAACCAATCCTCTTAGCCATGTTTTCTCTTTTGATCTATTTCTTTATCGA
TATGATTTATTTTTAAAATCTACATCGTTTTTCATCTACTCTGTTCTCAGAACTGTGTTGTTAT
GAATATAATTCTTCTGCTTGTATCTTTCTCTGATGAATCTTCATTGTCTGACTTGGGGAGTTCT
ACTTACCAAACCTTGGACGCCAAACAAATGTTCCACTCTTTTAATATGTTTCTAAAATAAATGA
TCTTTACAAAACATCATCAAA

hide sequence

RefSeq Acc Id:

XM_039085031 ⟹ XP_038940959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	68,492,135 - 68,515,674 (+)	NCBI
mRatBN7.2	10	67,994,601 - 68,018,141 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417139	(Get FASTA)	NCBI Sequence Viewer
	NP_446139	(Get FASTA)	NCBI Sequence Viewer
	XP_008766155	(Get FASTA)	NCBI Sequence Viewer
	XP_017452438	(Get FASTA)	NCBI Sequence Viewer
	XP_038940959	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD45931	(Get FASTA)	NCBI Sequence Viewer
	CAB56624	(Get FASTA)	NCBI Sequence Viewer
	EDM05466	(Get FASTA)	NCBI Sequence Viewer
	EDM05467	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073148.2

RefSeq Acc Id:

NP_446139 ⟸ NM_053687

- UniProtKB:

Q9TPX1 (UniProtKB/TrEMBL), A0A0G2K750 (UniProtKB/TrEMBL), A0A0G2K4S0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSITVDQDTDYAELVLSIGEITLGEKTRKSMKDSQRRKREAKTFQQAVCTLLNSGGGVAKARIK
NQNYDFSRDGVGQDLENFLPHILDFPHEYLDFKQVKDYFLMFVKAWKLKQKGPGITTLKTNLYI
RSISSSIELKAVNAVKFLKSRKCSKGRSDSRLSSPGTIVCNEVLNECLNLFNRDCFTCKEKFCF
TKATHAEVKLTPKENILEILPQTVSSFANADGGYLFIGLDGKTQEIIGFEAEKSDLVHLESEIE
KCIRQLPVTHFCEEREKIKYTCKFMEVHKPGAACSFVCALRVERFCCAVFAAEPESWHVEDSCV
KRFTAEDWVKRQMDGPACFSKQDKGPLQSSRLPHSPRSCCPDNPDALQQSAGLPVISGKVISSP
EALCGKLFSTQEAHEQLLWAQLDSLPKGTLVVTKRWALDLPLQDKHGVILDTLHIPQDSLLTLH
GFVLGGEDLEDDSTLLRELGAELKGYYKQTAVTLKQTLANHGSYTEKIGIAIKITYLGHNKAVS
LYDSSSKIHYPTKYYLTTETAKNLEKALAEILGSRESFYSLPRQNCSDHFIFAFFLSFSFLLVF
LFWSWGLNPEP

hide sequence

RefSeq Acc Id:

XP_008766155 ⟸ XM_008767933

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSITVDQDTDYAELVLSIGEITLGEKTRKSMKDSQRRKREAKTFQQAVCTLLNSGGGVAKARIK
NQNYDFSRDGVGQDLENFLPHILDFPHEYLDFKQVKDYFLMFVKAWKLKQKGPGITTLKTNLYI
RSISSSIELKAVNAVKFLKSRKCSKGRSDSRLSSPGTIVCNEVLNECLNLFNRDCFTCKEKFCF
TKATHAEVKLTPKENILEILPQTVSSFANADGGYLFIGLDGKTQEIIGFEAEKSDLVHLESEIE
KCIRQLPVTHFCEEREKIKYTCKFMEVHKPGAACSFVCALRVERFCCAVFAAEPESWHVEDSCV
KRFTAEDWVKRQMDGPACFSKQDKGPLQSSRLPHSPRSCCPDNPDALQQSAGLPVISGKVISSP
EALCGKLFSTQEAHEQLLWAQLDSLPKGTLVVTKRWALDLPLQDKHGVILDTLHIPQDSLLTLH
GFVLGGEDLEDDSTLLRELGAELKGYYKQTAVTLKQTLANHGSYTEKIGIAIKITYLGHNKAVS
LYDSSSKIHYPTKYYLTTETAKNLEKALAEILGSRESFYSLPRQNCSDHFIFAFFLSFSFLLVF
LFWSWGLNPEP

hide sequence

RefSeq Acc Id:	XP_017452438 ⟸ XM_017596949
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K4S0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGNLPRLVEDVNPQTFTEPSVQLKCPGNIFQGGRHAKPGSWKDSQHIKWKGFHLGSRDSNCKM SITVDQDTDYAELVLSIGEITLGEKTRKSMKDSQRRKREAKTFQQAVCTLLNSGGGVAKARIKN QNYDFSRDGVGQDLENFLPHILDFPHEYLDFKQVKDYFLMFVKAWKLKQKGPGITTLKTNLYIR SISSSIELKAVNAVKFLKSRKCSKGRSDSRLSSPGTIVCNEVLNECLNLFNRDCFTCKEKFCFT KATHAEVKLTPKENILEILPQTVSSFANADGGYLFIGLDGKTQEIIGFEAEKSDLVHLESEIEK CIRQLPVTHFCEEREKIKYTCKFMEVHKPGAACSFVCALRVERFCCAVFAAEPESWHVEDSCVK RFTAEDWVKRQMDGPACFSKQDKGPLQSSRLPHSPRSCCPDNPDALQQSAGLPVISGKVISSPE ALCGKLFSTQEAHEQLLWAQLDSLPKGTLVVTKRWALDLPLQDKHGVILDTLHIPQDSLLTLHG FVLGGEDLEDDSTLLRELGAELKGYYKQTAVTLKQTLANHGSYTEKIGIAIKITYLGHNKAVSL YDSSSKIHYPTKYYLTTETAKNLEKALAEILGSRESFYSLPRQNCSDHFIFAFFLSFSFLLVFL FWSWGLNPEP hide sequence

Ensembl Acc Id:

ENSRNOP00000072460 ⟸ ENSRNOT00000079325

Ensembl Acc Id:

ENSRNOP00000074064 ⟸ ENSRNOT00000078046

RefSeq Acc Id:	XP_038940959 ⟸ XM_039085031
- Peptide Label:	isoform X1
- UniProtKB:	Q9TPX1 (UniProtKB/TrEMBL), A0A0G2K750 (UniProtKB/TrEMBL), A0A0G2K4S0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000073148 ⟸ ENSRNOT00000087606

Protein Domains

Poxin-Schlafen/Schlafen-like N-terminal Schlafen AlbA-2 Schlafen GTPase-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9TPX1-F1-model_v2	AlphaFold	Q9TPX1	1-587	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697525

Promoter ID:

EPDNEW_R8050

Type:

initiation region

Name:

Slfn4_1

Description:

schlafen 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8051

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	70,411,716 - 70,411,776	EPDNEW

RGD ID:

13697530

Promoter ID:

EPDNEW_R8051

Type:

initiation region

Name:

Slfn4_2

Description:

schlafen 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8050

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	70,417,014 - 70,417,074	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620455	AgrOrtholog
BioCyc Gene	G2FUF-23905	BioCyc
Ensembl Genes	ENSRNOG00000057092	Ensembl
	ENSRNOG00000062983	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000063541	Ensembl
Ensembl Transcript	ENSRNOT00000087606.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.950.30	UniProtKB/TrEMBL
InterPro	ATPase_AAA-4	UniProtKB/TrEMBL
	Poxin-SLFN/SLFN_N	UniProtKB/TrEMBL
	Schlafen	UniProtKB/TrEMBL
	Schlafen_AAA_dom_sf	UniProtKB/TrEMBL
	SLFN_GTPase-like	UniProtKB/TrEMBL
KEGG Report	rno:114247	UniProtKB/TrEMBL
NCBI Gene	114247	ENTREZGENE
PANTHER	PTHR12155	UniProtKB/TrEMBL
	SCHLAFEN 3-RELATED	UniProtKB/TrEMBL
Pfam	AAA_4	UniProtKB/TrEMBL
	B3R	UniProtKB/TrEMBL
	SLFN_GTPase-like	UniProtKB/TrEMBL
PhenoGen	Slfn4	PhenoGen
RatGTEx	ENSRNOG00000057092	RatGTEx
	ENSRNOG00000062983	RatGTEx
	ENSRNOG00000063541	RatGTEx
UniProt	A0A0G2K4S0	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K750	ENTREZGENE, UniProtKB/TrEMBL
	Q9QYU5_RAT	UniProtKB/TrEMBL
	Q9TPX1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-10-04	Slfn4	schlafen family member 4	Slfn4	schlafen 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-10-28	Slfn4l	schlafen 4l	Slfn3	schlafen 3	Name and Symbol changed	629549	APPROVED
2015-10-28	Slfn4	schlafen 4	Slfn4l	schlafen 4l	Name and Symbol changed	629549	APPROVED
2015-07-29	Slfn3	schlafen 3	LOC102553282	uncharacterized LOC102553282	Data merged from RGD:7631613	737654	PROVISIONAL
2013-12-18	LOC102553282	uncharacterized LOC102553282			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-09-17	Slfn3	schlafen 3	Cdk107	CDK107	Data merged from RGD:621336	1643240	APPROVED
2004-09-10	Slfn3	schlafen 3	Slfn4	schlafen 4	Symbol and Name updated	1299863	APPROVED
2002-08-07	Slfn4	schlafen 4			Symbol and Name status set to provisional	70820	PROVISIONAL
2002-08-07	Cdk107	CDK107			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_process	indirectly activates an interferon-responsive enhancer element in a nuclear factor-kappaB pathway-dependent manner	633613

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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