Cga (glycoprotein hormones, alpha polypeptide) - Rat Genome Database

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Gene: Cga (glycoprotein hormones, alpha polypeptide) Rattus norvegicus
Analyze
Symbol: Cga
Name: glycoprotein hormones, alpha polypeptide
RGD ID: 620436
Description: Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in several processes, including positive regulation of steroid biosynthetic process; regulation of signaling receptor activity; and thyroid hormone generation. Predicted to act upstream of or within several processes, including gonadotropin secretion; negative regulation of organ growth; and thyroid gland development. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide); PARTICIPATES IN follicle-stimulating hormone signaling pathway; luteinizing hormone signaling pathway; autoimmune thyroiditis pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: anterior pituitary glycoprotein hormones common subunit alpha; follicle-stimulating hormone alpha chain; follitropin alpha chain; FSH-alpha; glycoprotein hormone alpha subunit; glycoprotein hormones alpha chain; glycoprotein hormones, alpha subunit; Gpa1; LSH-alpha; luteinizing hormone alpha chain; lutropin alpha chain; pituitary hormone; pituitary hormone alpha subunit; thyroid-stimulating hormone alpha chain; thyrotropin alpha chain; TSH-alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,283,109 - 54,295,464 (+)NCBIGRCr8
mRatBN7.2549,486,915 - 49,499,192 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,487,068 - 49,499,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx551,680,297 - 51,692,413 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,280,529 - 53,292,645 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0553,182,409 - 53,194,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,362,491 - 50,393,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,381,244 - 50,393,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0554,950,198 - 54,962,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,538,259 - 51,550,324 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1551,538,437 - 51,550,503 (+)NCBI
Celera548,231,474 - 48,243,595 (+)NCBICelera
RH 3.4 Map5269.7RGD
Cytogenetic Map5q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CgaRatbreast cancer disease_progressionISOCGA (Homo sapiens)2293635 RGD 
CgaRatHydatidiform Mole  ISOCGA (Homo sapiens)2293636protein:increased expression:serumRGD 
CgaRatLeydig cell tumor  ISOCGA (Homo sapiens)2293633 RGD 
CgaRatNeoplasm Metastasis  ISOCGA (Homo sapiens)2293637associated with Breast Neoplasms and protein:increased expression:serumRGD 
CgaRatprostate carcinoma  ISOCGA (Homo sapiens)2293634mRNA:increased expression:prostate glandRGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CgaRatadrenal gland disease  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20146381
CgaRatatrial fibrillation  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30061737
CgaRatDisease Progression  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:10566621
CgaRatFollicular Thyroid Cancer  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:10566621
CgaRathemiplegia  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:10566621
CgaRatoligospermia  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:16483355
CgaRatovarian disease  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20146381
CgaRatuterine disease  ISOCGA (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20146381

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Object Symbol
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Qualifier
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Reference
Notes
Source
Original Reference(s)
CgaRat(S)-nicotine increases expressionISOCGA (Homo sapiens)6480464Nicotine results in increased expression of CGA mRNACTDPMID:23825647
CgaRat17alpha-ethynylestradiol increases expressionISOCga (Mus musculus)6480464Ethinyl Estradiol results in increased expression of CGA mRNACTDPMID:17555576
CgaRat17alpha-ethynylestradiol multiple interactionsISOCga (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CGA mRNACTDPMID:17942748
CgaRat17beta-estradiol multiple interactionsEXP 6480464Estradiol inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of CGA mRNA]CTDPMID:21187122
CgaRat17beta-estradiol multiple interactionsISOCga (Mus musculus)6480464ESR2 gene mutant form inhibits the reaction [CGA protein results in increased abundance of Estradiol]CTDPMID:20378682
CgaRat17beta-estradiol increases abundanceISOCGA (Homo sapiens)6480464CGA protein results in increased abundance of EstradiolCTDPMID:19501113 and PMID:20378682
CgaRat17beta-estradiol multiple interactionsISOCGA (Homo sapiens)6480464[CGA protein co-treated with FSHB protein] affects the abundance of Estradiol more ...CTDPMID:19501113 more ...
CgaRat17beta-estradiol increases expressionISOCGA (Homo sapiens)6480464Estradiol results in increased expression of CGA proteinCTDPMID:19580841
CgaRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of CGA mRNACTDPMID:16522720 more ...
CgaRat17beta-estradiol 3-benzoate decreases expressionISOCga (Mus musculus)6480464estradiol 3-benzoate results in decreased expression of CGA mRNACTDPMID:15223135
CgaRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:27291303
CgaRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464CGA protein inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of ESR1 protein] more ...CTDPMID:12128104 and PMID:21187122
CgaRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCga (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CGA mRNACTDPMID:24793433
CgaRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CGA mRNACTDPMID:22493514
CgaRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of CGA mRNACTDPMID:21187122
CgaRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCga (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CGA mRNACTDPMID:17942748
CgaRat2-hydroxypropanoic acid decreases expressionISOCGA (Homo sapiens)6480464Lactic Acid results in decreased expression of CGA mRNACTDPMID:30851411
CgaRat3',5'-cyclic AMP multiple interactionsEXP 6480464[Flufenamic Acid results in decreased abundance of Cyclic AMP] which results in decreased expression of CGA mRNACTDPMID:8404651
CgaRat3',5'-cyclic AMP affects secretionISOCGA (Homo sapiens)6480464CGA protein affects the secretion of Cyclic AMPCTDPMID:23071612
CgaRat3',5'-cyclic AMP increases abundanceISOCGA (Homo sapiens)6480464CGA protein results in increased abundance of Cyclic AMPCTDPMID:20378682 more ...

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Biological Process
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
CgaRatbiological_process  ND 159840710/2015: no relevant rat dataRGD 
CgaRatcellular response to hormone stimulus acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatdevelopmental growth acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatfollicle-stimulating hormone secretion acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatG protein-coupled receptor signaling pathway involved_inISSUniProtKB:P012151600115GO_REF:0000024UniProtGO_REF:0000024
CgaRatG protein-coupled receptor signaling pathway involved_inISOCGA (Homo sapiens)1624291 PMID:24692546RGDPMID:24692546
CgaRatgonad development acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatluteinizing hormone secretion acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatnegative regulation of organ growth acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatorgan growth acts_upstream_ofISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatpositive regulation of steroid biosynthetic process involved_inISSUniProtKB:P012151600115GO_REF:0000024UniProtGO_REF:0000024
CgaRatpositive regulation of steroid biosynthetic process involved_inIBAPANTHER:PTN002608947 and UniProtKB:P012151600115GO_REF:0000033GO_CentralGO_REF:0000033
CgaRatpositive regulation of steroid biosynthetic process involved_inISOCGA (Homo sapiens)1624291 PMID:2494176RGDPMID:2494176
CgaRatregulation of signaling receptor activity involved_inISSUniProtKB:P012151600115GO_REF:0000024UniProtGO_REF:0000024
CgaRatregulation of signaling receptor activity involved_inISOCGA (Homo sapiens)1624291 PMID:24692546RGDPMID:24692546
CgaRatthyroid gland development acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
CgaRatthyroid hormone generation involved_inIBAMGI:88390 and PANTHER:PTN0026089471600115GO_REF:0000033GO_CentralGO_REF:0000033
CgaRatthyroid hormone generation acts_upstream_of_or_withinISOCga (Mus musculus)1624291MGI:1857152 PMID:12114718RGDPMID:12114718
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Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
CgaRatextracellular region located_inIEAInterPro:IPR0004761600115GO_REF:0000002InterProGO_REF:0000002
CgaRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
CgaRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
CgaRatextracellular space located_inISOCGA (Homo sapiens)1624291 PMID:24692546 and PMID:2494176RGDPMID:24692546 and PMID:2494176
CgaRatextracellular space is_active_inIBAPANTHER:PTN002608947 and UniProtKB:P012151600115GO_REF:0000033GO_CentralGO_REF:0000033
CgaRatextracellular space located_inISSUniProtKB:P012151600115GO_REF:0000024UniProtGO_REF:0000024
CgaRatfollicle-stimulating hormone complex part_ofISOCGA (Homo sapiens)1624291 PMID:11222739 more ...RGDPMID:11222739 more ...
CgaRatfollicle-stimulating hormone complex part_ofIBAPANTHER:PTN002608947 and UniProtKB:P012151600115GO_REF:0000033GO_CentralGO_REF:0000033
CgaRatfollicle-stimulating hormone complex part_ofISSUniProtKB:P012151600115GO_REF:0000024UniProtGO_REF:0000024
CgaRatpituitary gonadotropin complex part_ofISOCGA (Homo sapiens)1624291 PMID:7922031RGDPMID:7922031
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Molecular Function

  

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
CgaRatfollicle-stimulating hormone signaling pathway  ISOCGA (Homo sapiens)10402751 SMPDBSMP:00333
CgaRatluteinizing hormone signaling pathway  ISOCGA (Homo sapiens)10402751 SMPDBSMP:00338

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CgaRatautoimmune thyroiditis pathway  IEA 6907045 KEGGrno:05320
CgaRatgonadotropin-releasing hormone signaling pathway  IEA 6907045 KEGGrno:04912

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Reference Title
Reference Citation
1. Fetal but not adult Leydig cells are susceptible to adenoma formation in response to persistently high hCG level: a study on hCG overexpressing transgenic mice. Ahtiainen P, etal., Oncogene. 2005 Nov 10;24(49):7301-9.
2. Human chorionic gonadotropin and free subunits' serum levels in patients with partial and complete hydatidiform moles. Berkowitz R, etal., Obstet Gynecol. 1989 Aug;74(2):212-6.
3. CGA gene (coding for the alpha subunit of glycoprotein hormones) overexpression in ER alpha-positive prostate tumors. Bieche I, etal., Eur Urol. 2002 Mar;41(3):335-41.
4. The CGA gene as new predictor of the response to endocrine therapy in ER alpha-positive postmenopausal breast cancer patients. Bieche I, etal., Oncogene. 2001 Oct 18;20(47):6955-9.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. alpha Subunit of rat pituitary glycoprotein hormones. Primary structure of the precursor determined from the nucleotide sequence of cloned cDNAs. Godine JE, etal., J Biol Chem 1982 Jul 25;257(14):8368-71.
7. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Comprehensive gene review and curation RGD comprehensive gene curation
16. Distribution and characterization of alpha hCG in the serum and tumor cytosol of patients with breast cancer. Shindelman JE, etal., Int J Cancer. 1980 May 15;25(5):599-604.
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PMID:2467841   PMID:2494176   PMID:11207219   PMID:12114718   PMID:12477932   PMID:20352046   PMID:21187122   PMID:22206666   PMID:23299500   PMID:24692546  



Cga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,283,109 - 54,295,464 (+)NCBIGRCr8
mRatBN7.2549,486,915 - 49,499,192 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,487,068 - 49,499,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx551,680,297 - 51,692,413 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,280,529 - 53,292,645 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0553,182,409 - 53,194,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,362,491 - 50,393,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,381,244 - 50,393,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0554,950,198 - 54,962,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,538,259 - 51,550,324 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1551,538,437 - 51,550,503 (+)NCBI
Celera548,231,474 - 48,243,595 (+)NCBICelera
RH 3.4 Map5269.7RGD
Cytogenetic Map5q21NCBI
CGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38687,085,498 - 87,095,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl687,085,498 - 87,095,106 (-)EnsemblGRCh38hg38GRCh38
GRCh37687,795,216 - 87,804,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36687,851,941 - 87,861,543 (-)NCBINCBI36Build 36hg18NCBI36
Build 34687,851,940 - 87,861,543NCBI
Celera688,213,978 - 88,223,577 (-)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef685,012,102 - 85,021,750 (-)NCBIHuRef
CHM1_1687,892,792 - 87,902,440 (-)NCBICHM1_1
T2T-CHM13v2.0688,294,252 - 88,303,837 (-)NCBIT2T-CHM13v2.0
Cga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39434,893,779 - 34,907,374 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl434,893,779 - 34,907,370 (+)EnsemblGRCm39 Ensembl
GRCm38434,893,779 - 34,907,374 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl434,893,779 - 34,907,370 (+)EnsemblGRCm38mm10GRCm38
MGSCv37434,841,028 - 34,854,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36435,082,666 - 35,096,261 (+)NCBIMGSCv36mm8
Celera434,617,733 - 34,630,763 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map416.86NCBI
Cga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541114,092,743 - 14,095,302 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541114,092,743 - 14,168,297 (-)NCBIChiLan1.0ChiLan1.0
CGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25107,164,947 - 107,177,621 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16105,061,393 - 105,071,234 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0684,962,974 - 84,972,638 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1688,237,550 - 88,247,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl688,236,206 - 88,247,300 (-)Ensemblpanpan1.1panPan2
CGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11246,610,801 - 46,629,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1246,610,973 - 46,636,640 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1246,421,893 - 46,423,957 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01247,386,566 - 47,405,165 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1247,386,743 - 47,405,483 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11246,708,843 - 46,710,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01246,638,576 - 46,640,642 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01246,827,170 - 46,829,230 (-)NCBIUU_Cfam_GSD_1.0
Cga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494681,774,384 - 81,791,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365104,679,321 - 4,696,529 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365104,679,349 - 4,696,511 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl155,551,320 - 55,568,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1155,552,675 - 55,569,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2162,245,797 - 62,262,149 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1p21NCBI
CGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11311,560,543 - 11,578,070 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1311,560,222 - 11,578,093 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040187,751,845 - 187,768,611 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247997,249,586 - 7,265,999 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247997,249,502 - 7,265,662 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cga
59 total Variants

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000012385
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat

1 to 10 of 31 rows
RH139948  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map5269.7UniSTS
Cytogenetic Map5q13-q24UniSTS




alimentary part of gastrointestinal system
appendage
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 1 51 17 12 4 7 4 2 46 13 43 25 51 8



Ensembl Acc Id: ENSRNOT00000012385   ⟹   ENSRNOP00000012385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl549,487,068 - 49,499,191 (+)Ensembl
Rnor_6.0 Ensembl550,381,244 - 50,393,367 (+)Ensembl
RefSeq Acc Id: NM_053918   ⟹   NP_446370
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,283,340 - 54,295,464 (+)NCBI
mRatBN7.2549,487,068 - 49,499,192 (+)NCBI
Rnor_6.0550,381,244 - 50,393,365 (+)NCBI
Rnor_5.0554,950,198 - 54,962,319 (+)NCBI
RGSC_v3.4551,538,259 - 51,550,324 (+)RGD
Celera548,231,474 - 48,243,595 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063287072   ⟹   XP_063143142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,283,109 - 54,295,464 (+)NCBI
RefSeq Acc Id: XM_063287073   ⟹   XP_063143143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8554,283,109 - 54,295,464 (+)NCBI
RefSeq Acc Id: NP_446370   ⟸   NM_053918
- Peptide Label: precursor
- UniProtKB: P11962 (UniProtKB/Swiss-Prot),   P70516 (UniProtKB/Swiss-Prot),   A0A0F7RQ24 (UniProtKB/TrEMBL),   Q6P509 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012385   ⟸   ENSRNOT00000012385
RefSeq Acc Id: XP_063143143   ⟸   XM_063287073
- Peptide Label: isoform X1
- UniProtKB: P70516 (UniProtKB/Swiss-Prot),   P11962 (UniProtKB/Swiss-Prot),   A0A0F7RQ24 (UniProtKB/TrEMBL),   Q6P509 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143142   ⟸   XM_063287072
- Peptide Label: isoform X1
- UniProtKB: P70516 (UniProtKB/Swiss-Prot),   P11962 (UniProtKB/Swiss-Prot),   A0A0F7RQ24 (UniProtKB/TrEMBL),   Q6P509 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-P11962-F1-model_v2 AlphaFold P11962 1-120 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-41645 BioCyc
Ensembl Genes ENSRNOG00000009269 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012385.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6922315 IMAGE-MGC_LOAD
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot
  Glyco_hormone UniProtKB/Swiss-Prot
KEGG Report rno:116700 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72733 IMAGE-MGC_LOAD
NCBI Gene 116700 ENTREZGENE
PANTHER GLYCOPROTEIN HORMONES ALPHA CHAIN UniProtKB/Swiss-Prot
  PTHR11509 UniProtKB/Swiss-Prot
Pfam Hormone_6 UniProtKB/Swiss-Prot
PhenoGen Cga PhenoGen
PRINTS GLYCOHORMONE UniProtKB/Swiss-Prot
PROSITE GLYCO_HORMONE_ALPHA_1 UniProtKB/Swiss-Prot
  GLYCO_HORMONE_ALPHA_2 UniProtKB/Swiss-Prot
  GLYCO_HORMONE_ALPHA_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009269 RatGTEx
SMART GHA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
UniProt A0A0F7RQ24 ENTREZGENE, UniProtKB/TrEMBL
  A6IIP0_RAT UniProtKB/TrEMBL
  GLHA_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  P70516 ENTREZGENE
  Q6P509 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P70516 UniProtKB/Swiss-Prot
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-02-04 Cga  glycoprotein hormones, alpha polypeptide  Cga  glycoprotein hormones, alpha subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Cga  glycoprotein hormones, alpha subunit      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Cga        Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_protein precursor protein consists of a 24 amino acid leader sequence and a 96 amino acid alpha subunit apoprotein 632382