Cfi (complement factor I) - Rat Genome Database

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Gene: Cfi (complement factor I) Rattus norvegicus
Analyze
Symbol: Cfi
Name: complement factor I
RGD ID: 620429
Description: Predicted to enable serine-type peptidase activity. Involved in cellular response to interleukin-6. Located in extracellular space. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; age related macular degeneration 13; atypical hemolytic-uremic syndrome; complement factor I deficiency; and macular degeneration. Orthologous to human CFI (complement factor I); PARTICIPATES IN coagulation cascade pathway; complement system pathway; Staphylococcus aureus infection pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C3B/C4B inactivator; FI
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82221,062,206 - 221,104,790 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2221,062,212 - 221,104,786 (+)EnsemblGRCr8
mRatBN7.22218,389,079 - 218,430,565 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2218,387,990 - 218,430,561 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2226,074,156 - 226,108,943 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02223,973,845 - 224,008,640 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02218,831,494 - 218,866,282 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02235,264,149 - 235,305,779 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2235,264,219 - 235,305,781 (+)Ensemblrn6Rnor6.0
Rnor_5.0274,628,922 - 74,659,423 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42227,281,621 - 227,325,109 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2210,674,292 - 210,712,800 (+)NCBICelera
RGSC_v3.12227,268,300 - 227,311,787 (+)NCBI
Cytogenetic Map2q43NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (EXP,ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (ISO)
diarsenic trioxide  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
fenthion  (ISO)
flutamide  (EXP)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
inulin  (ISO)
L-ethionine  (EXP)
lansoprazole  (EXP)
lead(0)  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
omeprazole  (EXP)
ozone  (ISO)
pantoprazole  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quartz  (EXP)
quercetin  (ISO)
rabeprazole  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
tacrolimus hydrate  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zearalenone  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Complement factor I: a susceptibility gene for atypical haemolytic uraemic syndrome. Fremeaux-Bacchi V, etal., J Med Genet. 2004 Jun;41(6):e84.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Complement mutation-associated de novo thrombotic microangiopathy following kidney transplantation. Le Quintrec M, etal., Am J Transplant. 2008 Aug;8(8):1694-701. doi: 10.1111/j.1600-6143.2008.02297.x. Epub 2008 Jun 28.
4. Genetic, behavioral, and sociodemographic risk factors for second eye progression in age-related macular degeneration. Lechanteur YT, etal., Invest Ophthalmol Vis Sci. 2012 Aug 24;53(9):5846-52. doi: 10.1167/iovs.11-7731.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Increased plasma concentrations of complement modulating proteins (C1 inhibitor, C4-binding protein, factor H and factor I) in psoriasis. Ohkohchi K, etal., Tohoku J Exp Med. 1988 Apr;154(4):315-21.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Transcriptome characterization by RNA-Seq reveals the involvement of the complement components in noise-traumatized rat cochleae. Patel M, etal., Neuroscience. 2013 May 30;248C:1-16. doi: 10.1016/j.neuroscience.2013.05.038.
10. Serum levels of C3 and factors I and B in minimal change disease. Patiroglu T, etal., Acta Paediatr Jpn. 1998 Aug;40(4):333-6. doi: 10.1111/j.1442-200x.1998.tb01942.x.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Comprehensive gene review and curation RGD comprehensive gene curation
16. Factor I is required for the development of membranoproliferative glomerulonephritis in factor H-deficient mice. Rose KL, etal., J Clin Invest. 2008 Feb;118(2):608-18.
17. Complement factor I is upregulated in rat hepatocytes by interleukin-6 but not by interferon-gamma, interleukin-1beta, or tumor necrosis factor-alpha. Schlaf G, etal., Biol Chem. 2001 Jul;382(7):1089-94.
18. Rat complement factor I: molecular cloning, sequencing and expression in tissues and isolated cells. Schlaf G, etal., Immunology 1999 Nov;98(3):464-74.
19. A functional variant in the CFI gene confers a high risk of age-related macular degeneration. van de Ven JP, etal., Nat Genet. 2013 Jul;45(7):813-7. doi: 10.1038/ng.2640. Epub 2013 May 19.
20. Complement Factor H Serum Levels Determine Resistance to Pneumococcal Invasive Disease. van der Maten E, etal., J Infect Dis. 2016 Jun 1;213(11):1820-7. doi: 10.1093/infdis/jiw029. Epub 2016 Jan 21.
21. [Association of single nucleotide polymorphism in complement factor I gene with age-related macular degeneration]. Wu PB, etal., Zhonghua Yan Ke Za Zhi. 2013 Apr;49(4):350-6.
Additional References at PubMed
PMID:12477932   PMID:16502470   PMID:19056867   PMID:19423168   PMID:23376485   PMID:23533145   PMID:24006456  


Genomics

Comparative Map Data
Cfi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82221,062,206 - 221,104,790 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2221,062,212 - 221,104,786 (+)EnsemblGRCr8
mRatBN7.22218,389,079 - 218,430,565 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2218,387,990 - 218,430,561 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2226,074,156 - 226,108,943 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02223,973,845 - 224,008,640 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02218,831,494 - 218,866,282 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02235,264,149 - 235,305,779 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2235,264,219 - 235,305,781 (+)Ensemblrn6Rnor6.0
Rnor_5.0274,628,922 - 74,659,423 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42227,281,621 - 227,325,109 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2210,674,292 - 210,712,800 (+)NCBICelera
RGSC_v3.12227,268,300 - 227,311,787 (+)NCBI
Cytogenetic Map2q43NCBI
CFI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384109,730,982 - 109,801,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4109,731,008 - 109,802,195 (-)Ensemblhg38GRCh38
GRCh374110,652,138 - 110,723,155 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364110,881,297 - 110,942,783 (-)NCBIBuild 36Build 36hg18NCBI36
Build 344111,019,455 - 111,080,745NCBI
Celera4107,955,508 - 108,016,895 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4106,394,822 - 106,455,453 (-)NCBIHuRef
CHM1_14110,638,387 - 110,699,796 (-)NCBICHM1_1
T2T-CHM13v2.04113,031,939 - 113,104,052 (-)NCBIT2T-CHM13v2.0
Cfi
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393129,630,432 - 129,668,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3129,629,533 - 129,668,981 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383129,836,727 - 129,875,332 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3129,835,884 - 129,875,332 (+)Ensemblmm10GRCm38
MGSCv373129,539,657 - 129,578,246 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363129,828,759 - 129,867,354 (+)NCBIMGSCv36mm8
Celera3136,349,476 - 136,389,693 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map359.21NCBI
Cfi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955496492,167 - 553,217 (+)Ensembl
ChiLan1.0NW_004955496492,217 - 553,398 (+)NCBIChiLan1.0ChiLan1.0
CFI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23107,831,937 - 107,906,418 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14108,125,471 - 108,199,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04102,236,868 - 102,311,359 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14112,804,645 - 112,865,581 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4112,804,645 - 112,865,581 (-)EnsemblpanPan2panpan1.1
CFI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,936,447 - 29,986,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,936,393 - 29,985,724 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3212,034,262 - 12,093,545 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03230,155,997 - 30,216,527 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3230,155,943 - 30,206,594 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13230,150,126 - 30,210,801 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03229,894,695 - 29,953,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,895,138 - 9,954,756 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cfi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530110,952,721 - 10,990,319 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936563960,883 - 988,634 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936563960,883 - 998,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8112,433,633 - 112,470,832 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18112,430,824 - 112,470,844 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28120,517,180 - 120,554,319 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1757,641,363 - 57,713,209 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl757,640,141 - 57,700,805 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603736,292,740 - 36,365,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfi
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624830111,004 - 151,514 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624830111,123 - 151,668 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cfi
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1329,430,890 - 29,466,129 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cfi
527 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:97
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000034706
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2212145502231732847Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1302789Stl26Serum triglyceride level QTL 263.10.0035blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)2206613059226891081Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2209350500221678003Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2192287802221089121Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2205135267225627153Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat

Markers in Region
D2Mgh29  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82221,088,977 - 221,089,121 (+)Marker Load Pipeline
mRatBN7.22218,414,747 - 218,414,891 (+)MAPPERmRatBN7.2
Rnor_6.02235,289,967 - 235,290,110NCBIRnor6.0
Rnor_5.0274,640,967 - 74,641,110UniSTSRnor5.0
RGSC_v3.42227,309,864 - 227,310,008RGDRGSC3.4
RGSC_v3.42227,309,865 - 227,310,008UniSTSRGSC3.4
Celera2210,697,016 - 210,697,159UniSTS
RGSC_v3.12227,296,545 - 227,296,688RGD
RH 3.4 Map21547.1UniSTS
RH 3.4 Map21547.1RGD
RH 2.0 Map21130.1RGD
Cytogenetic Map2q43UniSTS
RH128544  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22218,430,201 - 218,430,411 (+)MAPPERmRatBN7.2
Rnor_6.02235,305,416 - 235,305,625NCBIRnor6.0
Rnor_5.0274,629,076 - 74,629,285UniSTSRnor5.0
RGSC_v3.42227,324,746 - 227,324,955UniSTSRGSC3.4
Celera2210,712,437 - 210,712,646UniSTS
RH 3.4 Map21556.7UniSTS
Cytogenetic Map2q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 31 108 91 90 59 30 59 6 251 92 8 84 76 85 31 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000086245   ⟹   ENSRNOP00000071685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2221,073,956 - 221,104,786 (+)Ensembl
mRatBN7.2 Ensembl2218,399,719 - 218,430,561 (+)Ensembl
Rnor_6.0 Ensembl2235,264,219 - 235,305,781 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113687   ⟹   ENSRNOP00000089885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2221,062,212 - 221,104,786 (+)Ensembl
mRatBN7.2 Ensembl2218,387,990 - 218,430,561 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116911   ⟹   ENSRNOP00000089666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2221,062,212 - 221,104,786 (+)Ensembl
mRatBN7.2 Ensembl2218,387,990 - 218,430,561 (+)Ensembl
RefSeq Acc Id: NM_024157   ⟹   NP_077071
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82221,063,316 - 221,104,790 (+)NCBI
mRatBN7.22218,389,079 - 218,430,565 (+)NCBI
Rnor_6.02235,264,298 - 235,305,779 (+)NCBI
Rnor_5.0274,628,922 - 74,659,423 (-)NCBI
RGSC_v3.42227,281,621 - 227,325,109 (+)RGD
Celera2210,674,292 - 210,712,800 (+)RGD
Sequence:
RefSeq Acc Id: XM_063282608   ⟹   XP_063138678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82221,062,206 - 221,104,790 (+)NCBI
Protein Sequences
Protein RefSeqs NP_077071 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138678 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89798 (Get FASTA)   NCBI Sequence Viewer  
  CAB41688 (Get FASTA)   NCBI Sequence Viewer  
  EDL82188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071685
  ENSRNOP00000089885
GenBank Protein Q9WUW3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_077071   ⟸   NM_024157
- Peptide Label: precursor
- UniProtKB: Q5EBC4 (UniProtKB/Swiss-Prot),   Q9WUW3 (UniProtKB/Swiss-Prot),   A0A8I6AC86 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071685   ⟸   ENSRNOT00000086245
Ensembl Acc Id: ENSRNOP00000089885   ⟸   ENSRNOT00000113687
Ensembl Acc Id: ENSRNOP00000089666   ⟸   ENSRNOT00000116911
RefSeq Acc Id: XP_063138678   ⟸   XM_063282608
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AC86 (UniProtKB/TrEMBL),   A0A8I6AAQ9 (UniProtKB/TrEMBL)
Protein Domains
Kazal-like   LDL-receptor class A   Peptidase S1   SRCR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUW3-F1-model_v2 AlphaFold Q9WUW3 1-604 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691751
Promoter ID:EPDNEW_R2276
Type:initiation region
Name:Cfi_1
Description:complement factor I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02235,264,271 - 235,264,331EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620429 AgrOrtholog
BioCyc Gene G2FUF-51236 BioCyc
Ensembl Genes ENSRNOG00000053400 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000086245 ENTREZGENE
  ENSRNOT00000113687 ENTREZGENE
Gene3D-CATH 2.40.10.10 UniProtKB/Swiss-Prot
  3.10.250.10 UniProtKB/Swiss-Prot
  3.30.60.30 UniProtKB/Swiss-Prot
  4.10.400.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7321559 IMAGE-MGC_LOAD
InterPro CFAI_FIMAC_N UniProtKB/Swiss-Prot
  CFAI_KAZAL UniProtKB/Swiss-Prot
  FacI_MAC UniProtKB/Swiss-Prot
  Kazal_dom UniProtKB/Swiss-Prot
  Kazal_dom_sf UniProtKB/Swiss-Prot
  LDL_receptor-like_sf UniProtKB/Swiss-Prot
  LDLR_class-A_CS UniProtKB/Swiss-Prot
  LDrepeatLR_classA_rpt UniProtKB/Swiss-Prot
  Peptidase_S1_PA UniProtKB/Swiss-Prot
  Peptidase_S1_PA_chymotrypsin UniProtKB/Swiss-Prot
  Peptidase_S1A UniProtKB/Swiss-Prot
  SRCR UniProtKB/Swiss-Prot
  SRCR-like_dom_sf UniProtKB/Swiss-Prot
  Trypsin_dom UniProtKB/Swiss-Prot
  TRYPSIN_HIS UniProtKB/Swiss-Prot
  TRYPSIN_SER UniProtKB/Swiss-Prot
KEGG Report rno:79126 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108679 IMAGE-MGC_LOAD
NCBI Gene 79126 ENTREZGENE
PANTHER ACROSIN-RELATED UniProtKB/Swiss-Prot
  SUPPRESSOR OF TUMORIGENICITY 14 PROTEIN HOMOLOG-RELATED UniProtKB/Swiss-Prot
Pfam CFAI_FIMAC_N UniProtKB/Swiss-Prot
  CFAI_KAZAL UniProtKB/Swiss-Prot
  Ldl_recept_a UniProtKB/Swiss-Prot
  SRCR UniProtKB/Swiss-Prot
  Trypsin UniProtKB/Swiss-Prot
PhenoGen Cfi PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/Swiss-Prot
PROSITE KAZAL_2 UniProtKB/Swiss-Prot
  LDLRA_1 UniProtKB/Swiss-Prot
  LDLRA_2 UniProtKB/Swiss-Prot
  SRCR_2 UniProtKB/Swiss-Prot
  TRYPSIN_DOM UniProtKB/Swiss-Prot
  TRYPSIN_HIS UniProtKB/Swiss-Prot
  TRYPSIN_SER UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000053400 RatGTEx
SMART FIMAC UniProtKB/Swiss-Prot
  KAZAL UniProtKB/Swiss-Prot
  LDLa UniProtKB/Swiss-Prot
  SM00202 UniProtKB/Swiss-Prot
  Tryp_SPc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot
  SSF50494 UniProtKB/Swiss-Prot
  SSF56487 UniProtKB/Swiss-Prot
  SSF57424 UniProtKB/Swiss-Prot
UniProt A0A0G2K135_RAT UniProtKB/TrEMBL
  A0A8I6AAQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AC86 ENTREZGENE, UniProtKB/TrEMBL
  A6HVQ2_RAT UniProtKB/TrEMBL
  CFAI_RAT UniProtKB/Swiss-Prot
  Q5EBC4 ENTREZGENE
  Q9WUW3 ENTREZGENE
UniProt Secondary Q5EBC4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Cfi  complement factor I      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Cfi  complement factor I      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in the uterus and small intestine 634725
gene_homology shows identities of 87% to the mouse and of 78% to the human FI nucleotide sequence 634725