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Gene: Coil (coilin) Rattus norvegicus

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Symbol:

Coil

Name:

coilin

RGD ID:

62031

Description:

Predicted to enable disulfide oxidoreductase activity; identical protein binding activity; and snRNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to be located in female germ cell nucleus; fibrillar center; and nuclear body. Predicted to be active in Cajal body. Orthologous to human COIL (coilin); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	COIL (coilin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Coil (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Coil (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	COIL (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	COIL (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Coil (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	COIL (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	COIL (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Coil (coilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PPP1R2 (protein phosphatase 1 regulatory inhibitor subunit 2)	HGNC	OMA
Homo sapiens (human):	PPP1R2B (PPP1R2 family member B)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Coil (coilin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	COIL (coilin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	coil (coilin p80)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	74,286,279 - 74,307,597 (+)	NCBI		GRCr8
mRatBN7.2	10	73,789,077 - 73,810,378 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	73,789,488 - 73,810,393 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	78,412,522 - 78,427,977 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	77,917,447 - 77,932,904 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	73,380,611 - 73,396,068 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	76,320,676 - 76,336,169 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	76,320,041 - 76,341,418 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	73,772,233 - 73,792,449 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	77,435,834 - 77,452,170 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	77,450,203 - 77,466,538 (+)	NCBI
Celera	10	72,695,262 - 72,710,398 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Coil	Rat	hereditary breast ovarian cancer syndrome		ISO	COIL (Homo sapiens)	8554872	ClinVar Annotator: match by term: Breast-ovarian cancer more ...	ClinVar	PMID:38922859
Coil	Rat	Joubert syndrome 1		ISO	COIL (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Coil	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Coil (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of COIL mRNA	CTD	PMID:22206623
Coil	Rat	17beta-estradiol	decreases expression	EXP		6480464	Estradiol results in decreased expression of COIL mRNA	CTD	PMID:20068009
Coil	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Coil (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of COIL mRNA	CTD	PMID:21570461
Coil	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of COIL mRNA	CTD	PMID:33387578
Coil	Rat	2-hydroxypropanoic acid	decreases expression	ISO	COIL (Homo sapiens)	6480464	Lactic Acid results in decreased expression of COIL mRNA	CTD	PMID:30851411
Coil	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of COIL mRNA	CTD	PMID:28959563
Coil	Rat	all-trans-retinoic acid	decreases expression	ISO	COIL (Homo sapiens)	6480464	Tretinoin results in decreased expression of COIL mRNA	CTD	PMID:21934132
Coil	Rat	ammonium chloride	affects expression	EXP		6480464	Ammonium Chloride affects the expression of COIL mRNA	CTD	PMID:16483693
Coil	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of COIL mRNA	CTD	PMID:30779732
Coil	Rat	aristolochic acid A	decreases expression	ISO	COIL (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of COIL mRNA	CTD	PMID:33212167
Coil	Rat	benzo[a]pyrene	increases expression	ISO	Coil (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of COIL mRNA	CTD	PMID:22228805
Coil	Rat	benzo[a]pyrene	increases methylation	ISO	COIL (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of COIL promoter	CTD	PMID:27901495
Coil	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of COIL mRNA	CTD	PMID:25181051
Coil	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of COIL mRNA	CTD	PMID:30816183
Coil	Rat	cadmium dichloride	decreases expression	ISO	COIL (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of COIL mRNA	CTD	PMID:38568856
Coil	Rat	caffeine	affects phosphorylation	ISO	COIL (Homo sapiens)	6480464	Caffeine affects the phosphorylation of COIL protein	CTD	PMID:35688186
Coil	Rat	camptothecin	increases expression	ISO	COIL (Homo sapiens)	6480464	Camptothecin results in increased expression of COIL mRNA	CTD	PMID:33770205
Coil	Rat	chlorpyrifos	decreases expression	ISO	Coil (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of COIL mRNA	CTD	PMID:37019170
Coil	Rat	cisplatin	increases expression	ISO	COIL (Homo sapiens)	6480464	Cisplatin results in increased expression of COIL mRNA	CTD	PMID:27392435
Coil	Rat	clozapine	increases expression	EXP		6480464	Clozapine results in increased expression of COIL mRNA	CTD	PMID:16715494
Coil	Rat	cocaine	affects expression	EXP		6480464	Cocaine affects the expression of COIL mRNA	CTD	PMID:20187946
Coil	Rat	copper(II) sulfate	decreases expression	ISO	COIL (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of COIL mRNA	CTD	PMID:19549813
Coil	Rat	coumarin	increases phosphorylation	ISO	COIL (Homo sapiens)	6480464	coumarin results in increased phosphorylation of COIL protein	CTD	PMID:35688186
Coil	Rat	crocidolite asbestos	decreases expression	ISO	Coil (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of COIL mRNA	CTD	PMID:29279043
Coil	Rat	cyclosporin A	increases expression	ISO	COIL (Homo sapiens)	6480464	Cyclosporine results in increased expression of COIL mRNA	CTD	PMID:25562108
Coil	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of COIL mRNA	CTD	PMID:29391264
Coil	Rat	enzyme inhibitor	multiple interactions	ISO	COIL (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of COIL protein	CTD	PMID:23301498
Coil	Rat	ethyl methanesulfonate	increases expression	ISO	COIL (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of COIL mRNA	CTD	PMID:23649840
Coil	Rat	folic acid	multiple interactions	ISO	Coil (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of COIL mRNA	CTD	PMID:22206623
Coil	Rat	formaldehyde	decreases expression	ISO	COIL (Homo sapiens)	6480464	Formaldehyde results in decreased expression of COIL mRNA	CTD	PMID:20655997
Coil	Rat	FR900359	affects phosphorylation	ISO	COIL (Homo sapiens)	6480464	FR900359 affects the phosphorylation of COIL protein	CTD	PMID:37730182
Coil	Rat	haloperidol	increases expression	EXP		6480464	Haloperidol results in increased expression of COIL mRNA	CTD	PMID:16715494
Coil	Rat	ivermectin	decreases expression	ISO	COIL (Homo sapiens)	6480464	Ivermectin results in decreased expression of COIL protein	CTD	PMID:32959892
Coil	Rat	methyl methanesulfonate	increases expression	ISO	COIL (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of COIL mRNA	CTD	PMID:23649840
Coil	Rat	ozone	multiple interactions	ISO	COIL (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of COIL mRNA	CTD	PMID:35430440
Coil	Rat	paracetamol	affects expression	ISO	Coil (Mus musculus)	6480464	Acetaminophen affects the expression of COIL mRNA	CTD	PMID:17562736
Coil	Rat	paracetamol	decreases expression	ISO	COIL (Homo sapiens)	6480464	Acetaminophen results in decreased expression of COIL mRNA	CTD	PMID:21420995
Coil	Rat	pirinixic acid	multiple interactions	ISO	Coil (Mus musculus)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of COIL mRNA	CTD	PMID:19710929
Coil	Rat	potassium dichromate	increases expression	ISO	COIL (Homo sapiens)	6480464	Potassium Dichromate results in increased expression of COIL protein	CTD	PMID:23718831
Coil	Rat	quercetin	decreases expression	ISO	COIL (Homo sapiens)	6480464	Quercetin results in decreased expression of COIL mRNA	CTD	PMID:21632981
Coil	Rat	rac-lactic acid	decreases expression	ISO	COIL (Homo sapiens)	6480464	Lactic Acid results in decreased expression of COIL mRNA	CTD	PMID:30851411
Coil	Rat	rotenone	decreases expression	ISO	COIL (Homo sapiens)	6480464	Rotenone results in decreased expression of COIL mRNA	CTD	PMID:33512557
Coil	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of COIL mRNA	CTD	PMID:19281266
Coil	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of COIL mRNA	CTD	PMID:34492290
Coil	Rat	titanium dioxide	decreases expression	ISO	Coil (Mus musculus)	6480464	titanium dioxide results in decreased expression of COIL mRNA	CTD	PMID:29264374
Coil	Rat	titanium dioxide	decreases methylation	ISO	Coil (Mus musculus)	6480464	titanium dioxide results in decreased methylation of COIL promoter	CTD	PMID:35295148
Coil	Rat	trichostatin A	decreases expression	ISO	COIL (Homo sapiens)	6480464	trichostatin A results in decreased expression of COIL mRNA	CTD	PMID:24935251
Coil	Rat	trichostatin A	affects expression	ISO	COIL (Homo sapiens)	6480464	trichostatin A affects the expression of COIL mRNA	CTD	PMID:28542535
Coil	Rat	triptonide	affects expression	ISO	Coil (Mus musculus)	6480464	triptonide affects the expression of COIL mRNA	CTD	PMID:33045310
Coil	Rat	urethane	decreases expression	ISO	COIL (Homo sapiens)	6480464	Urethane results in decreased expression of COIL mRNA	CTD	PMID:28818685
Coil	Rat	valproic acid	decreases expression	ISO	Coil (Mus musculus)	6480464	Valproic Acid results in decreased expression of COIL mRNA	CTD	PMID:21427059
Coil	Rat	valproic acid	decreases expression	ISO	COIL (Homo sapiens)	6480464	Valproic Acid results in decreased expression of COIL mRNA	CTD	PMID:23179753 more ...
Coil	Rat	valproic acid	affects expression	ISO	COIL (Homo sapiens)	6480464	Valproic Acid affects the expression of COIL mRNA	CTD	PMID:25979313
Coil	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of COIL mRNA	CTD	PMID:23034163

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Coil	Rat	spliceosomal snRNP assembly	involved_in	IBA	PANTHER:PTN000390494 and ZFIN:ZDB-GENE-000330-8	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Coil	Rat	Cajal body	located_in	ISO	COIL (Homo sapiens)	1624291	PMID:12757932 more ...	RGD	PMID:12757932 more ...
Coil	Rat	Cajal body	located_in	ISO	Coil (Mus musculus)	1624291	PMID:11470819 and PMID:7768196	RGD	PMID:11470819 and PMID:7768196
Coil	Rat	Cajal body	is_active_in	IBA	MGI:104842 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Coil	Rat	female germ cell nucleus	located_in	ISO	Coil (Mus musculus)	1624291	PMID:7768196	RGD	PMID:7768196
Coil	Rat	fibrillar center	located_in	ISO	COIL (Homo sapiens)	1624291		RGD	GO_REF:0000052
Coil	Rat	nuclear body	located_in	ISO	COIL (Homo sapiens)	1624291		RGD	GO_REF:0000052
Coil	Rat	nucleolus	located_in	ISO	COIL (Homo sapiens)	1624291	PMID:12757932	RGD	PMID:12757932
Coil	Rat	nucleoplasm	located_in	ISO	COIL (Homo sapiens)	1624291	PMID:12757932	RGD	GO_REF:0000052 and PMID:12757932
Coil	Rat	nucleus	located_in	ISO	COIL (Homo sapiens)	1624291	PMID:19734146	RGD	PMID:19734146
Coil	Rat	nucleus	located_in	ISO	Coil (Mus musculus)	1624291	PMID:28337219	RGD	PMID:28337219

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Coil	Rat	disulfide oxidoreductase activity	enables	ISO	Coil (Mus musculus)	1624291	PMID:17284516	RGD	PMID:17284516
Coil	Rat	identical protein binding	enables	ISO	COIL (Homo sapiens)	1624291	UniProtKB:P38432 and PMID:16713569	RGD	PMID:16713569
Coil	Rat	protein binding	enables	ISO	COIL (Homo sapiens)	1624291	UniProtKB:G5E9M4 more ...	RGD	PMID:12757932 more ...
Coil	Rat	protein binding	enables	ISO	Coil (Mus musculus)	1624291	PR:E9Q5C9 more ...	RGD	PMID:11470819 and PMID:23685356
Coil	Rat	U1 snRNA binding	enables	IBA	PANTHER:PTN000390494 and TAIR:locus:2031810	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Coil	Rat	U2 snRNA binding	enables	IBA	PANTHER:PTN000390494 and TAIR:locus:2031810	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Assembly of snRNP-containing coiled bodies is regulated in interphase and mitosis--evidence that the coiled body is a kinetic nuclear structure.	Carmo-Fonseca M, etal., J Cell Biol 1993 Feb;120(4):841-52.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	p80 coilin, a coiled body-specific protein, interacts with ataxin-1, the SCA1 gene product.	Hong S, etal., Biochim Biophys Acta 2003 May 20;1638(1):35-42.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:7768196	PMID:11470819	PMID:16687569	PMID:16713569	PMID:17284516	PMID:17577209	PMID:19734146	PMID:19946888	PMID:22547674	PMID:28337219

Coil
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	74,286,279 - 74,307,597 (+)	NCBI		GRCr8
mRatBN7.2	10	73,789,077 - 73,810,378 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	73,789,488 - 73,810,393 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	78,412,522 - 78,427,977 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	77,917,447 - 77,932,904 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	73,380,611 - 73,396,068 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	76,320,676 - 76,336,169 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	76,320,041 - 76,341,418 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	73,772,233 - 73,792,449 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	77,435,834 - 77,452,170 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	77,450,203 - 77,466,538 (+)	NCBI
Celera	10	72,695,262 - 72,710,398 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

COIL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	56,938,199 - 56,961,050 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	56,938,199 - 56,961,050 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	55,015,560 - 55,038,411 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	52,370,559 - 52,393,410 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	52,370,561 - 52,393,410	NCBI
Celera	17	51,477,125 - 51,499,976 (-)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	50,376,180 - 50,399,432 (-)	NCBI		HuRef
CHM1_1	17	55,080,769 - 55,103,619 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	57,815,838 - 57,838,690 (-)	NCBI		T2T-CHM13v2.0

Coil
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	88,864,761 - 88,882,439 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	88,861,078 - 88,882,439 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	88,973,935 - 88,991,613 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	88,970,252 - 88,991,613 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	88,835,249 - 88,852,927 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	88,790,040 - 88,807,703 (+)	NCBI		MGSCv36	mm8
Celera	11	98,590,249 - 98,608,066 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	54.34	NCBI

Coil
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	5,884,233 - 5,898,525 (+)	NCBI	ChiLan1.0	ChiLan1.0

COIL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	73,111,130 - 73,134,002 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	77,922,063 - 77,944,941 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	51,015,403 - 51,038,276 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	55,876,226 - 55,898,862 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	55,877,098 - 55,898,827 (-)	Ensembl	panpan1.1		panPan2

COIL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	31,745,456 - 31,762,289 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	31,746,137 - 31,762,270 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	30,985,202 - 31,001,963 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	32,553,135 - 32,569,904 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	32,553,135 - 32,569,893 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	31,338,241 - 31,341,654 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	31,622,461 - 31,639,220 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	31,705,861 - 31,722,626 (-)	NCBI		UU_Cfam_GSD_1.0

Coil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	31,106,367 - 31,124,937 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	5,950,034 - 5,962,095 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	5,950,215 - 5,968,772 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COIL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	33,234,437 - 33,254,342 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	33,231,842 - 33,254,357 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	34,038,175 - 34,061,197 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COIL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	36,450,064 - 36,473,294 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	36,450,102 - 36,469,493 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	7,269,233 - 7,292,676 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Coil
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	11,994,541 - 12,006,912 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	11,994,664 - 12,006,594 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Coil
108 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	11
Count of miRNA genes:	11
Interacting mature miRNAs:	11
Transcripts:	ENSRNOT00000037693
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	51663405	75085664	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
2289982	Bp303	Blood pressure QTL 303			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	73452992	75632053	Rat
2289983	Bp304	Blood pressure QTL 304			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	73579541	74119158	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
724555	Bp150	Blood pressure QTL 150		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	73452992	78210622	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	65927233	82565079	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	73452992	83463334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

RH128817

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,804,891 - 73,805,106 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	76,335,921 - 76,336,135	NCBI	Rnor6.0
Rnor_5.0	10	73,777,511 - 73,777,725	UniSTS	Rnor5.0
RGSC_v3.4	10	77,451,922 - 77,452,136	UniSTS	RGSC3.4
Celera	10	72,710,150 - 72,710,364	UniSTS
RH 3.4 Map	10	682.39	UniSTS
Cytogenetic Map	10	q26	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_017360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF220424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF399643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037693 ⟹ ENSRNOP00000030534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	73,789,488 - 73,810,393 (+)	Ensembl
Rnor_6.0 Ensembl	10	76,320,041 - 76,341,418 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099028 ⟹ ENSRNOP00000081623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	73,789,633 - 73,805,138 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110927 ⟹ ENSRNOP00000082470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	73,789,488 - 73,805,138 (+)	Ensembl

RefSeq Acc Id:

NM_017360 ⟹ NP_059056

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	74,286,852 - 74,302,348 (+)	NCBI
mRatBN7.2	10	73,789,642 - 73,805,140 (+)	NCBI
Rnor_6.0	10	76,320,676 - 76,336,169 (+)	NCBI
Rnor_5.0	10	73,772,233 - 73,792,449 (-)	NCBI
RGSC_v3.4	10	77,435,834 - 77,452,170 (+)	RGD
Celera	10	72,695,262 - 72,710,398 (+)	RGD

Sequence:

show sequence

ATGGCAGCCTCCGAGACGGTTAGGGTACGACTTCAATTTGACTACCCGCCGCCGGCCACTCCACACTGCACGGTCTTCTGGCTTCTAGTTGACCTGAACAGATGCCGAGTTGTCACAGATCTCATCAG
TCTCATCCGCCAGCGCTTTGGCTTCAGTTCCGGGGCGCTCCTGGGCCTCTATCTGGAAGGGGGGCTTCTGCCCCCTTCCGAGAGCGCGCGCCTGGTGAGAGACAACGACTGCCTCAGGGTTAAGTTAG
AAGACCAAGGACTCCCTGAGGCTTTGATAGTAAGCAATGGCGGCGACTCTAATTTCCCATGTAGGAAATCAAAGAAGCGGGCTTTTAAGTTGGTGGAGGACGAGGAGACGGACCAGGGTTACAAGTAC
CCTGACAAGTACTGGAAGAGGCAGGAGGACAGCGGCCCTAATGAGAAGGCCTCAGACCTGGAGACAAAACTCTTCCCAGACGAGGTGCGGCGGACAAAGAACAAGAGAAAAAGCAAAGTGGCAGGCAT
CCCTGCTGAGGAGGACGAGGAAGAGACCAAAAAGAAGTCTTCAAAAAGAAAGGAGAAATGTGAACAGAAGAAGCAGACCAGGGCCTCCAAGTCTCCCAAACAACAGACACATAAAGAGGGAGGCTCAC
AGAACTGCAGCTTCCCCAGGGCCTCCTACAGAAGCAGCCTTGCTAAAGCCCGGAGGAGAAGCAGCACAGGGGCAAAAGGTAGTCCAAGCTACCTGTCAGAGTCTGAGTCCTGTCCAGACTCAGTCAGT
GATGGCCACTGCAGTGTCACGACGATGCAGGGGGTCACCTTATCAGAGAAACTGTCAGCTGAGCTGTTGAAAGACGGAGCTACAAAAACTGCAGCTGCCAACAGACAGTCCTCAAAGCCTAGCTTCAC
CTTCAGCTCCGGCAAGGGCAAGGCCTCCAGAGCCTCGTCTTCCAGTTCAGACTCCAGTTCAGAGTCAGAAGACCAGTTCCTGGTGTCCAAGAACATGCTGGAGGGCACATCTGACTTCTTAAAGACAA
CAGGCCTCTTTGCAGGGCAAGGGTGTTCCAGTCCAGGGCTGTCTTTGGAGACTCCGGGTATTATGGGATGGAAGCCTTCTGACTCAAACAGAGGCAGACAGGCTCCTGGTCCCAACGTGCCTGTCCCC
TCCAGTTTGGGAAGAGGATGGGGGCGAGGAGAGGACTTCTTGTTTGGGAAGGGACTGAGGGGCCGGGGTATTCGGGGCCGAGGGCGAGGTCGAGGTCAGACTGTCTCCTGTATCTTAAATAGAAGCTC
TGAGAGCCAGAAGCAGAAACAGTTAAATGATATTCTAACCAACTCATCCACGGTGATCCAGAATCCAGTAGAGACCTCCAAGAAGGACTATAGTCTGTTACCACTCTTAGCAGCTGCCCCTCAAGTCG
GAGAAAAGATTGCCTTCAAGCTTTTGGAACTTACATCCGACTATTCTCCTGATGTCTCTGACTACAAGGAAGGAAAAATATTAAGCCACGATCCAGAGACCCAGCAAGTGGATATTGAAGTCCTCTCC
TCCCTACCGGCTTTGAAAGAACCTGGGAAGTTTGATTTGGTCTATCACAATGAAAACGGAACCGAGGTGGTGGAATACGCTGTGACGCAGGAGAAGCGGATCACTGTGTTCTGGAAAGAGTTGATCGA
TCCGAGACTGATTATTGACTCTTCAAGTAGCATCTCAAGTAAATAATGTGTCTGCAAATACCCTCTGACCTTGCCGCCTTGAATTCTATAATTTGTTGTGACCGTGGTTATAGCCTGAAAGTTTTAAA
AAAGAGGGCTAAATGTTGTTAGACTTTTTTGTATCTTCACTTTACCATATTAGGAAAAAAAAAAATCTACCCTAATAATTAGAAGTACCGAGNTGCTAGTATTGAGAATCCTAATTTCTTCCGGCTTA
GGTCAAGTACCCAATTGGAAAACCGGGTGCAGACCAATAAAGACAGTGCGCCTGACTTCTTCCCAACTGGTCGCGTTCCAATAGCAATCATAGTGGAGGGTACCGGGCACACACCAGAATGTGCTGGC
CGCCTGTGCTGGTTTTAAGCACTTTATACTACTAAGCATGTGTCTTGACTAAATTTTACACATGAGCTGTTTTGTTACGCACAGAGCATCTCCCACATTCCACACATTTTATGCTTGCTATCCTCGAG
AGTTAGTGGAGTTGGATTTGCCGGGGCGACAGGTTACAGAGTCCTTTCACATCTTCCAGCTGGAAAATACAGGGCCCTTAGGACCCTGTGCCGACTGCAGTGGGGAGACATGGTTGTTGTATCATCTG
GAGAAGACATGGTCTCCCAGAAGGCTGGCCATGAACCTCAGACCAGGCTGGGGCAAGTGACCTTGTCACACAGTGCCAGGAACTTGGCTTCTCATACTGAAGTGAGGATCTTAAACAGAAATGTCCTT
TTCTGTTATTATCCACCACGAAGCTAAAGGCTGAATATAAACTGCAAATTGCTTTCTTTTAATGAAAACTCAGATCCCTCCTTCAGCCTTGCAGATTTTTAAATAAAACCATATCAAACTCAAAAAAA
AAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039086664 ⟹ XP_038942592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	74,286,279 - 74,307,597 (+)	NCBI
mRatBN7.2	10	73,789,077 - 73,810,378 (+)	NCBI


Protein RefSeqs	NP_059056	(Get FASTA)	NCBI Sequence Viewer
	XP_038942592	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF33783	(Get FASTA)	NCBI Sequence Viewer
	AAK92459	(Get FASTA)	NCBI Sequence Viewer
	EDM05650	(Get FASTA)	NCBI Sequence Viewer
	EDM05651	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030534
	ENSRNOP00000030534.6
	ENSRNOP00000081623.1
	ENSRNOP00000082470
	ENSRNOP00000082470.1

RefSeq Acc Id:

NP_059056 ⟸ NM_017360

- UniProtKB:

A0A8I5ZUZ7 (UniProtKB/TrEMBL), A6HHZ5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAASETVRVRLQFDYPPPATPHCTVFWLLVDLNRCRVVTDLISLIRQRFGFSSGALLGLYLEGGLLPPSESARLVRDNDCLRVKLEDQGLPEALIVSNGGDSNFPCRKSKKRAFKLVEDEETDQGYKY
PDKYWKRQEDSGPNEKASDLETKLFPDEVRRTKNKRKSKVAGIPAEEDEEETKKKSSKRKEKCEQKKQTRASKSPKQQTHKEGGSQNCSFPRASYRSSLAKARRRSSTGAKGSPSYLSESESCPDSVS
DGHCSVTTMQGVTLSEKLSAELLKDGATKTAAANRQSSKPSFTFSSGKGKASRASSSSSDSSSESEDQFLVSKNMLEGTSDFLKTTGLFAGQGCSSPGLSLETPGIMGWKPSDSNRGRQAPGPNVPVP
SSLGRGWGRGEDFLFGKGLRGRGIRGRGRGRGQTVSCILNRSSESQKQKQLNDILTNSSTVIQNPVETSKKDYSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHDPETQQVDIEVLS
SLPALKEPGKFDLVYHNENGTEVVEYAVTQEKRITVFWKELIDPRLIIDSSSSISSK

hide sequence

Ensembl Acc Id:

ENSRNOP00000030534 ⟸ ENSRNOT00000037693

RefSeq Acc Id:	XP_038942592 ⟸ XM_039086664
- Peptide Label:	isoform X1
- UniProtKB:	E9PTJ1 (UniProtKB/TrEMBL), A0A8I5ZUZ7 (UniProtKB/TrEMBL), A6HHZ5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081623 ⟸ ENSRNOT00000099028

Ensembl Acc Id:

ENSRNOP00000082470 ⟸ ENSRNOT00000110927

Protein Domains

Coilin N-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PTJ1-F1-model_v2	AlphaFold	E9PTJ1	1-593	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-23698	BioCyc
Ensembl Genes	ENSRNOG00000000244	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037693	ENTREZGENE
	ENSRNOT00000037693.7	UniProtKB/TrEMBL
	ENSRNOT00000099028.1	UniProtKB/TrEMBL
	ENSRNOT00000110927	ENTREZGENE
	ENSRNOT00000110927.1	UniProtKB/TrEMBL
InterPro	Coilin	UniProtKB/TrEMBL
	Coilin_N	UniProtKB/TrEMBL
KEGG Report	rno:50998	UniProtKB/TrEMBL
NCBI Gene	50998	ENTREZGENE
PANTHER	COILIN	UniProtKB/TrEMBL
	PTHR15197	UniProtKB/TrEMBL
Pfam	Coilin_N	UniProtKB/TrEMBL
PhenoGen	Coil	PhenoGen
RatGTEx	ENSRNOG00000000244	RatGTEx
UniProt	A0A8I5ZU31_RAT	UniProtKB/TrEMBL
	A0A8I5ZUZ7	ENTREZGENE, UniProtKB/TrEMBL
	A6HHZ5	ENTREZGENE, UniProtKB/TrEMBL
	A6HHZ6_RAT	UniProtKB/TrEMBL
	E9PTJ1	ENTREZGENE, UniProtKB/TrEMBL
	Q923T0_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Coil	coilin			Name updated	70584	APPROVED

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar