S100a3 (S100 calcium binding protein A3)

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Gene: S100a3 (S100 calcium binding protein A3) Rattus norvegicus

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Symbol:

S100a3

Name:

S100 calcium binding protein A3

RGD ID:

620260

Description:

Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be located in Golgi apparatus; cytosol; and plasma membrane. Orthologous to human S100A3 (S100 calcium binding protein A3); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

protein S100-A3; S100 calcium-binding protein A3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,331,856 - 178,387,280 (+)	NCBI		GRCr8
mRatBN7.2	2	176,034,283 - 176,089,702 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	176,049,520 - 176,089,702 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,227,105 - 183,229,888 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,249,373 - 181,252,156 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,849,243 - 175,852,020 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,955,619 - 189,996,029 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,955,836 - 189,996,029 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,881,054 - 182,883,821 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,831,159 - 182,833,927 (+)	NCBI
Celera	2	170,021,662 - 170,024,429 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

prostate cancer (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1,3,5-trinitro-1,3,5-triazinane (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

ethylparaben (ISO)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

glycidol (EXP)

ivermectin (ISO)

lidocaine (EXP)

lithium chloride (ISO)

maleic acid (ISO)

methimazole (EXP)

N-methyl-N-nitrosourea (EXP)

N-nitrosodiethylamine (ISO)

obeticholic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

poly(I:C) (EXP)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

thiram (ISO)

titanium dioxide (ISO)

toluene (EXP)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

Golgi apparatus (IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

calcium ion binding (IBA)

calcium-dependent protein binding (IBA)

protein binding (ISO)

transition metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Probing the structure of the human Ca2+- and Zn2+-binding protein S100A3: spectroscopic investigations of its transition metal ion complexes, and three-dimensional structural model.	Fritz G, etal., Biochim Biophys Acta 1998 Dec 10;1448(2):264-76.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15502186

Genomics

Comparative Map Data

S100a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,331,856 - 178,387,280 (+)	NCBI		GRCr8
mRatBN7.2	2	176,034,283 - 176,089,702 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	176,049,520 - 176,089,702 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,227,105 - 183,229,888 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,249,373 - 181,252,156 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,849,243 - 175,852,020 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,955,619 - 189,996,029 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,955,836 - 189,996,029 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,881,054 - 182,883,821 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,831,159 - 182,833,927 (+)	NCBI
Celera	2	170,021,662 - 170,024,429 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

S100A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,547,329 - 153,549,258 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,547,329 - 153,549,258 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,519,805 - 153,521,734 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,786,433 - 151,788,358 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	150,332,881 - 150,334,807	NCBI
Celera	1	126,591,069 - 126,592,994 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,883,069 - 124,884,994 (-)	NCBI		HuRef
CHM1_1	1	154,915,758 - 154,917,683 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,684,585 - 152,686,514 (-)	NCBI		T2T-CHM13v2.0

S100a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,467,571 - 90,510,922 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,491,966 - 90,510,009 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,560,356 - 90,602,706 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,584,659 - 90,602,702 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,404,137 - 90,406,624 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,686,142 - 90,688,629 (+)	NCBI		MGSCv36	mm8
Celera	3	90,641,619 - 90,644,106 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.26	NCBI

S100a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	195,779 - 205,471 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	195,834 - 205,442 (-)	NCBI	ChiLan1.0	ChiLan1.0

S100A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,285,460 - 96,286,264 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	96,020,636 - 96,021,798 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,902,495 - 128,904,247 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,531,577 - 132,534,351 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,531,579 - 132,533,508 (-)	Ensembl	panpan1.1		panPan2

S100A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,490,128 - 43,492,383 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,984,445 - 42,985,336 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,441,207 - 43,442,098 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,440,733 - 43,445,796 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	43,143,728 - 43,144,618 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,197,372 - 43,198,263 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,480,985 - 43,481,876 (+)	NCBI		UU_Cfam_GSD_1.0

S100a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,328,830 - 24,330,919 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,359,188 - 3,360,594 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,359,247 - 3,360,226 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

S100A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	96,084,088 - 96,086,827 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	96,084,049 - 96,086,829 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,912,470 - 104,915,251 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

S100A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,249,332 - 10,256,671 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	10,255,515 - 10,256,318 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	9,645,450 - 9,648,204 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

S100a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,585,111 - 3,589,138 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	3,572,419 - 3,588,121 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in S100a3
255 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	41
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000016034
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Markers in Region

D2Wox52

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	176,088,408 - 176,088,616 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	189,994,736 - 189,994,943	NCBI	Rnor6.0
Rnor_5.0	2	209,428,831 - 209,429,038	UniSTS	Rnor5.0
RGSC_v3.4	2	182,882,528 - 182,882,735	UniSTS	RGSC3.4
Celera	2	170,023,136 - 170,023,343	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH132651

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	176,089,314 - 176,089,508 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	189,995,642 - 189,995,835	NCBI	Rnor6.0
Rnor_5.0	2	209,429,737 - 209,429,930	UniSTS	Rnor5.0
RGSC_v3.4	2	182,883,434 - 182,883,627	UniSTS	RGSC3.4
Celera	2	170,024,042 - 170,024,235	UniSTS
RH 3.4 Map	2	1165.4	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	106	63	63	32	25	32	6	189	96	87	44	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF140231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016034 ⟹ ENSRNOP00000016034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	176,087,602 - 176,089,702 (+)	Ensembl
Rnor_6.0 Ensembl	2	189,993,262 - 189,996,029 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078351 ⟹ ENSRNOP00000074528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	176,049,520 - 176,089,698 (+)	Ensembl
Rnor_6.0 Ensembl	2	189,955,836 - 189,996,029 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108343 ⟹ ENSRNOP00000085336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	176,086,931 - 176,089,702 (+)	Ensembl

RefSeq Acc Id:

NM_053681 ⟹ NP_446133

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,384,513 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,086,935 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,993,262 - 189,996,029 (+)	NCBI
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI
RGSC_v3.4	2	182,881,054 - 182,883,821 (+)	RGD
Celera	2	170,021,662 - 170,024,429 (+)	RGD

Sequence:

show sequence

CTCAGTTGTTAGGCTCCTACAGCTGAAGCAGCAGCAGCAGTTGAGGATGACCCGGCCCCTGGAG
CAGGCAGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGCAGGGCGCTGTGGTGACAAATACA
AGATCTGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAGCTGCCCACCTGGACCCCGAGTGA
GTTCCGGGAGTGTGACTACAATAAATTCATGAGTGTTCTGGATACTAACAAGGACTGCGAGGTG
GACTTTGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCTCTACTGCCACGAGTACTTCAAAG
AGTGCCCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTCCAAAGGCGTATGCTATCCCAGAA
GGGCCAGGTCTGCTTCAGTGCTCCATTTTTATCCCTGAGTTGGTCCTACTCTCTCAGTGTTACC
CCTTTCGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCCAGCTACCCACAAGCTTTAGAGGC
TTGTCTAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAACATCT
CTGCTCTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGGACTGCTGTGGCAGGGGCCTCCTC
AACTCCCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_006232558 ⟹ XP_006232620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,384,606 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,087,024 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,993,319 - 189,996,029 (+)	NCBI
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI

Sequence:

show sequence

GGGAACTAACTGCCTTGGGCTGGGGGTTGAGGCAGCTCGGGGAAACCCTCAATAGGTAGCCTGT
TCCTGGATACAGGGTCTGGATATGGGGACAGAAAGATGATGTTAGGAGGTGATGAGGTCTCAGA
GGTTCCCTCATACACTAAAGATCTGTAAGGAAGTTTGCTTTGGGGAGCGTGCCCAGCCACGATT
ACCGATGTGGGGACAATGGCTAGCTGTGCTTCCGGTGCAGCCCTCGTGAGGATGACCCGGCCCC
TGGAGCAGGCAGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGCAGGGCGCTGTGGTGACAA
ATACAAGATCTGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAGCTGCCCACCTGGACCCCG
AGTGAGTTCCGGGAGTGTGACTACAATAAATTCATGAGTGTTCTGGATACTAACAAGGACTGCG
AGGTGGACTTTGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCTCTACTGCCACGAGTACTT
CAAAGAGTGCCCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTCCAAAGGCGTATGCTATCC
CAGAAGGGCCAGGTCTGCTTTAGTGCTCCATTTTTATCCCTGAGTTGGTCCTACTCTCTCAGTG
TTACCCCTTTCGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCCAGCTACCCACAAGCTTTA
GAGGCTTGTCTAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAA
CATCTCTGCTCTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGGACTGCTGTGGCAGGGGCC
TCCTCAACTCCCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_006232559 ⟹ XP_006232621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,365,047 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,067,484 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,973,019 - 189,996,029 (+)	NCBI
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI

Sequence:

show sequence

AAAGCAAGGATTATAGCAGACCCTGGGCTTGGTGCCGTTTATGTTACATTCAGGTAAAGGAATT
GGCTGTGTGTTCTGTCCTAAGAATTTGAGTGAAGTCGCATTCAGAAGCAATAGACTAATTTATT
TGGTAGAGAACATTGCCAGACAGATCAGCATTCAGGATGTCACATGGTTATTGATCACCGTCTT
TAGCTATGTTTCCAGTAAGAATTTCTGGAGTGAAAAAAATGCAGAAAATCAAGAGTTCTAATGT
GCACAGGAGCACAAGCCAAGATAAAGTTGCAGAAGGGGCAGATAGGGTTTTTGCACACAAAATA
GCTACAATTATAAAGGCAGGAACACAATTAAGGGCAAACTATGCAGCTTGCTTTGGGACAATAG
GGATGGTACATTAAAGGTAAGCAAGACCTTACTCACTGAAGGGTTCAGGGCATGGAACTGAAAA
CCTATTTGAAAACATTCATTCGAAAGGAGAGGGTCTGCAAGGAAAGCACCTTTGCAGGGTGCTT
TTGGCTTGAAAATGGCTGCCTAGGGGAATTTTCACTGACTAAGTTACATACTTAGATACTGCAG
CCATAGTCCAAGTGGGTCAGGCTACATTTCAAGTTGGCAGTAAAAACTTGGGGCTATTTTCCAT
GTAGTTCTGGCTTGGCAGGCAAACAAACCTCAAGATTCATGGGCCAGTGGAAATTTGCACAAGA
TTCCACAAAGCTGCTGAGGTCAGGCAATATGCAGCATTCTCTGTATAGAGCCCTTGAGTGGGTT
GTGCATAAATTCGAAGCCCATTTCCAACGGAGATTCCAGGATGTTTGAGATGCCACGAATCTGA
ACTTCCGCAGGCACTGAGGAGAGTCAGGCCAAGGGAGAACACACGTATACCACAGGTTGCAGGG
CTGGAGGGGCAGGACTGTCCAAACCCGTCGGAGCCCAGGGGATGCTGTCATGAGCCCCAGATAT
TGGTCGTGCAATTGTTGCAAGTGAGGATGACCCGGCCCCTGGAGCAGGCAGTAGCTGCCATCGT
GTGTACCTTCCAGGAGTATGCAGGGCGCTGTGGTGACAAATACAAGATCTGCCAGTCGGAGCTC
AAGGAGCTGTTGCAGAAGGAGCTGCCCACCTGGACCCCGAGTGAGTTCCGGGAGTGTGACTACA
ATAAATTCATGAGTGTTCTGGATACTAACAAGGACTGCGAGGTGGACTTTGGGGAGTACGTGCG
CTCACTTGCCAGCCTCTGTCTCTACTGCCACGAGTACTTCAAAGAGTGCCCCCCTGAGCCCCCT
TGTCCCCAGTAGCCTCTGGTCCAAAGGCGTATGCTATCCCAGAAGGGCCAGGTCTGCTTTAGTG
CTCCATTTTTATCCCTGAGTTGGTCCTACTCTCTCAGTGTTACCCCTTTCGATCTAGGCTTGTC
AGTCCCTGAGATGCTAACCCCAGCTACCCACAAGCTTTAGAGGCTTGTCTAGCTGGTGAGGGGT
GGAATAGTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAACATCTCTGCTCTTACCTGGAAGCTC
AGGCATGTGCACACAGTTGGGACTGCTGTGGCAGGGGCCTCCTCAACTCCCAATAAAGAAATGT
CATCTTGGC

hide sequence

RefSeq Acc Id:

XM_006232560 ⟹ XP_006232622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,371,537 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,074,002 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,980,321 - 189,996,029 (+)	NCBI
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI

Sequence:

show sequence

CGCTCAGATTTCAGTGGTGCCAGCACCGTCACCTCCCTAGGTGCTGCCTGGTGAGGGGCTCCAC
TCTGGTGCTTGTGGGTTGGGGTTTCCGGTTGCTGCTCTGGCTCTGGGGAGCAGGGTGTGCCGCT
GAGTCACCACCTGGGTATCTGGGCTTGGAACCACGGTGAGGATGACCCGGCCCCTGGAGCAGGC
AGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGCAGGGCGCTGTGGTGACAAATACAAGATC
TGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAGCTGCCCACCTGGACCCCGAGTGAGTTCC
GGGAGTGTGACTACAATAAATTCATGAGTGTTCTGGATACTAACAAGGACTGCGAGGTGGACTT
TGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCTCTACTGCCACGAGTACTTCAAAGAGTGC
CCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTCCAAAGGCGTATGCTATCCCAGAAGGGCC
AGGTCTGCTTTAGTGCTCCATTTTTATCCCTGAGTTGGTCCTACTCTCTCAGTGTTACCCCTTT
CGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCCAGCTACCCACAAGCTTTAGAGGCTTGTC
TAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAACATCTCTGCT
CTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGGACTGCTGTGGCAGGGGCCTCCTCAACTC
CCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_006232563 ⟹ XP_006232625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,384,979 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,087,444 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,993,664 - 189,996,029 (+)	NCBI
Rnor_5.0	2	209,407,859 - 209,430,124 (+)	NCBI

Sequence:

show sequence

AGCTTCTGAAATAGCAACTGAAGTGGCGCCAGGCAGGCTGGGAGGAACTCAGAAGGGCTCTGAG
GTGCAGAGCTCCTGGGATCACTGCATTTTCCTCTCCAAGGATCATGGCATTTTCCTCCGCTGGG
AATGTGGATCCTTGCTCCAGCACCGGGTTGTCACAGAGAATTAGATCCCATCGTTCTTGCCACT
TCATCCTCCGTTCCCTTAATTCCTTGCCAGCTACAATCTTGCTGGCCATTTGCTCCCAGTAGAG
GGAACTCACCAGGAAGAATATTGGCTCTGGCTGCCCTGTGTTGCAGGACTCCAGTCCCCTGAGG
GAGTGAGGAGTGAGTCATCGGACTCAGATGGAAACAACTCCATTGCCTTCCCGCCAGCCCAGGG
TTTGCCCAGGCTGCACCAGCAATGGAAGGGGATAATGTAGGTGAGGATGACCCGGCCCCTGGAG
CAGGCAGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGCAGGGCGCTGTGGTGACAAATACA
AGATCTGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAGCTGCCCACCTGGACCCCGAGTGA
GTTCCGGGAGTGTGACTACAATAAATTCATGAGTGTTCTGGATACTAACAAGGACTGCGAGGTG
GACTTTGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCTCTACTGCCACGAGTACTTCAAAG
AGTGCCCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTCCAAAGGCGTATGCTATCCCAGAA
GGGCCAGGTCTGCTTTAGTGCTCCATTTTTATCCCTGAGTTGGTCCTACTCTCTCAGTGTTACC
CCTTTCGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCCAGCTACCCACAAGCTTTAGAGGC
TTGTCTAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAACATCT
CTGCTCTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGGACTGCTGTGGCAGGGGCCTCCTC
AACTCCCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_008761122 ⟹ XP_008759344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,347,076 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,049,422 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,955,619 - 189,996,029 (+)	NCBI

Sequence:

show sequence

ACAGCTGTAGGGTTTGAGGATTCTTGTATCATGTGGGGGGGGGTTCCAGTTCCCAGCTGCTTGC
AAACATAACTGAAGCACTCTGCCCCCCAGAGCTAGAAAGACACTTACCCAAGGACAGCTGTAGG
GTTTGAGGATTCTTGTATCATGTAGGGGGTTTCCAGTTCCCAGCTGCTTATAGACATAACTGAA
GCCCTCTGTCCTCCAAAGCTAGAAGCACCCCTTCCCAAGCACAGCTGTAGTGCTCATCGCCCAT
ACTGCTGTGCCTCATAGCTCCCATACTGCTGTGCCTCATAGCTCCCATACTGCTGTGCCTCATA
GCTCCCACTTTGATGTGGGCCTTGGGGGAGAGTGCTAACGCCAGCCGTACCCTACAACACAATT
ATGCAGCTGAATTTCCTTACATTTGGGGAAGTTGCAGGGGTCAGCACAGAATGAGCCTCATCCT
GGAAAACCACCTCCCTGATAATGGTTTCTCCCCTGCCAGTGAGGATGACCCGGCCCCTGGAGCA
GGCAGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGCAGGGCGCTGTGGTGACAAATACAAG
ATCTGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAGCTGCCCACCTGGACCCCGAGTGAGT
TCCGGGAGTGTGACTACAATAAATTCATGAGTGTTCTGGATACTAACAAGGACTGCGAGGTGGA
CTTTGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCTCTACTGCCACGAGTACTTCAAAGAG
TGCCCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTCCAAAGGCGTATGCTATCCCAGAAGG
GCCAGGTCTGCTTTAGTGCTCCATTTTTATCCCTGAGTTGGTCCTACTCTCTCAGTGTTACCCC
TTTCGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCCAGCTACCCACAAGCTTTAGAGGCTT
GTCTAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAACATCTCT
GCTCTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGGACTGCTGTGGCAGGGGCCTCCTCAA
CTCCCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_017590577 ⟹ XP_017446066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,368,719 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,071,124 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,976,625 - 189,996,029 (+)	NCBI

Sequence:

show sequence

AATAATTTTCCCAAAAATAAATCAAGAGGCTGGAATATAGCTCCACTGAGGAAAGACTTTCCAC
GAGAGTACCTGGCATGGCTTGGGTCATGAAAGGGTATGGCTTATACTGCAGCAGAGGAAGTGTG
CCTAGGATAGAGTGCTGTGCCTTGACCTTCTAATTTTTCATGTTCTTTAGTCTGGAGAGATCTG
AGGTTTTAAATAGTTACCCTGGTGGCAGAGCTGAGGGGGGTTTAGAGTGAGGCCCAAGAGCAGG
GGAGGGAGGAGCATTTGGGTGTGTCTGCAATAGGACCAGATGATTTGGAAGAGGCCTAAGCAGT
GTGGACAGGGTCCAGACCTGTTTAGAGACAATAAGCAGACTGACCAGACATCTTGTTGGCAGGC
AGGAAGCAGGAGGCTGGGCAGAAGCCAAGTGTCTGGTTTGGAGCATTGGGTGGATGGCGGTGTC
CTTTGTGGCACAGGGGGAAGCCTGGTTCATGCATCAGTCTGTCTCCAGTCTCCATTGTTGCCCT
CTGGGGACTTTGCTTAGCTCCTTTTCTGGGTCCCAGTGGCGAGATGTTTCCTGTGCTCACTCCT
CAGGGGTTTGCAGCTCTCCAAGGCTCTGTTTACCAAGCCTGTCTTCCAAGCCCTCATTGTCACT
CCTGGGACTCAGAAGAGACGTTATTATTTGCTAGTGTGATCAGCTTTCAGGCATCGAGATCAGA
GAGGGATCCCTGGCCCTCTGGCTCCTAACCCCAAGTGACCCCTGCTGTCACTCAGCAGCCATGA
GCACACTGGCAAGAGCCTGTGCTCGTGAAGAAATGAATAAGACCTAATTTTTACTGGAAGGTGG
AGGGGGGCGGTGCTGATTTCAAATCCAGGCCACAGTACATTTGTAGGAAACAGGAAAGGGTGCC
AGAACCAGAGATGCTACGAAGACAGGCTCCTGGACCCCAGTGTGGCTGAGACCGAGGCTAATTT
GCTGGGCAGATGGAGTGAGGATGACCCGGCCCCTGGAGCAGGCAGTAGCTGCCATCGTGTGTAC
CTTCCAGGAGTATGCAGGGCGCTGTGGTGACAAATACAAGATCTGCCAGTCGGAGCTCAAGGAG
CTGTTGCAGAAGGAGCTGCCCACCTGGACCCCGAGTGAGTTCCGGGAGTGTGACTACAATAAAT
TCATGAGTGTTCTGGATACTAACAAGGACTGCGAGGTGGACTTTGGGGAGTACGTGCGCTCACT
TGCCAGCCTCTGTCTCTACTGCCACGAGTACTTCAAAGAGTGCCCCCCTGAGCCCCCTTGTCCC
CAGTAGCCTCTGGTCCAAAGGCGTATGCTATCCCAGAAGGGCCAGGTCTGCTTTAGTGCTCCAT
TTTTATCCCTGAGTTGGTCCTACTCTCTCAGTGTTACCCCTTTCGATCTAGGCTTGTCAGTCCC
TGAGATGCTAACCCCAGCTACCCACAAGCTTTAGAGGCTTGTCTAGCTGGTGAGGGGTGGAATA
GTCTTTGCTGCTTCTCTTCTTGGAAGGGAAGAACATCTCTGCTCTTACCTGGAAGCTCAGGCAT
GTGCACACAGTTGGGACTGCTGTGGCAGGGGCCTCCTCAACTCCCAATAAAGAAATGTCATCTT
GGC

hide sequence

RefSeq Acc Id:

XM_017590578 ⟹ XP_017446067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,366,457 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,068,975 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,974,455 - 189,996,029 (+)	NCBI

Sequence:

show sequence

AGAGGCTAAGTTTGAATGTTTTTTCTAGCTATTATCCAAGGCAGGGTCTCATATTGAACTTAGA
GCTCATCAACTGGCTAGACTAGCTGACTAGAAGGCCTCAAGAATCCTGTCTTCTGTGTCCCAGC
GCTAGGGTTACATGTAGGTTACATGTATGAGCCGCCATGTCCAGCGATTTATATGAGTTCTGGC
AATCTAATCTCAGCTTCTCATGTTTGAACAGCAATCACTTTGTGGACTGAGGAATTCCTCCAGC
AACTCTAGTGACTTTTAAAGTTGTCCTGAATGTGTGACTGCATCCTGCATTATGGGGTGGCCAT
GTGACCACCCTGCTGGAGGCAGAATGTAACGGTTTGGATGGGAACTGTCTTCCATAGGCTCATG
TGTTTACAAACTTGGCCCATAGCAGGCAGTGCTGCTTCAGGAAACGAAGAAACCTTTACAATGT
GGGACTAAGCTAGAGGAAAGCAGGCAGGCCTTAAGGAGTCACAGCCCTGCCCAGCTTCTGTTTG
ACCTCTTTGCTTTCTGGCTGGTGACATGATGTAAGCAGTGTCCAGTGGTCCTTTTACCCCAACA
TGGAGTTGCTCTTGCTTCTATGGCTTTCCTCATCATAATGAACTGTTATATCTTAAATCACTAA
CTAAAAACAAATTCATCTTCTCTTAAATCTTTTCTTTTAGGTATTTTTATAATAGTGATGGGAA
AGTAACCAGTGCAGGCCAGTAAGATCTTTTTATTATTTAATGTGTGTGGGTGTTTTGCCTGTAA
GTATGTCTCTTCATTCTGTGCATGCAATGCTCAAGGAGGCCAGAAGAGGGCAGTGGATTCCCTT
GGAAAATTACAGCTGCTCCTTGGGTTCTGGAAACTCCATCCTGGATCTTCTGGGGGAGTGCCAG
TGCTCTCAATGCTGAGCCACCTTTCCAGCCCCAAGGCCTTGATATCTTTATCATGGACAGGGGT
GTAGCTATTTCCTCAGGATCGAAACATCCCTCCAAAGCTCAGGAAGTAAACAAAACTTTCGAGT
CTCAGGAAGCTCCTAAAACAATATTCACAAGGTGCCTCCCTGAAGGTACAGAATCGGAAAGGAT
TTGTGGGGAGAGGAGAACTGTTGATCTGCTGAGCTGCCTGCAAGCAGGGCAAGGTGTGCTGAGG
TGAGGATGACCCGGCCCCTGGAGCAGGCAGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGC
AGGGCGCTGTGGTGACAAATACAAGATCTGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAG
CTGCCCACCTGGACCCCGAGTGAGTTCCGGGAGTGTGACTACAATAAATTCATGAGTGTTCTGG
ATACTAACAAGGACTGCGAGGTGGACTTTGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCT
CTACTGCCACGAGTACTTCAAAGAGTGCCCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTC
CAAAGGCGTATGCTATCCCAGAAGGGCCAGGTCTGCTTTAGTGCTCCATTTTTATCCCTGAGTT
GGTCCTACTCTCTCAGTGTTACCCCTTTCGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCC
AGCTACCCACAAGCTTTAGAGGCTTGTCTAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCT
CTTCTTGGAAGGGAAGAACATCTCTGCTCTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGG
ACTGCTGTGGCAGGGGCCTCCTCAACTCCCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_017590580 ⟹ XP_017446069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,384,795 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,087,209 - 176,089,702 (+)	NCBI
Rnor_6.0	2	189,993,583 - 189,996,029 (+)	NCBI

Sequence:

show sequence

TCTCTGCTTCATTCCTGGGGATGAGCTGGGACAGGCCAGGGCTGCAGGAGAAGAAAGGATCCCT
TGAGGATGACCCGGCCCCTGGAGCAGGCAGTAGCTGCCATCGTGTGTACCTTCCAGGAGTATGC
AGGGCGCTGTGGTGACAAATACAAGATCTGCCAGTCGGAGCTCAAGGAGCTGTTGCAGAAGGAG
CTGCCCACCTGGACCCCGAGTGAGTTCCGGGAGTGTGACTACAATAAATTCATGAGTGTTCTGG
ATACTAACAAGGACTGCGAGGTGGACTTTGGGGAGTACGTGCGCTCACTTGCCAGCCTCTGTCT
CTACTGCCACGAGTACTTCAAAGAGTGCCCCCCTGAGCCCCCTTGTCCCCAGTAGCCTCTGGTC
CAAAGGCGTATGCTATCCCAGAAGGGCCAGGTCTGCTTTAGTGCTCCATTTTTATCCCTGAGTT
GGTCCTACTCTCTCAGTGTTACCCCTTTCGATCTAGGCTTGTCAGTCCCTGAGATGCTAACCCC
AGCTACCCACAAGCTTTAGAGGCTTGTCTAGCTGGTGAGGGGTGGAATAGTCTTTGCTGCTTCT
CTTCTTGGAAGGGAAGAACATCTCTGCTCTTACCTGGAAGCTCAGGCATGTGCACACAGTTGGG
ACTGCTGTGGCAGGGGCCTCCTCAACTCCCAATAAAGAAATGTCATCTTGGC

hide sequence

RefSeq Acc Id:

XM_039101554 ⟹ XP_038957482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,331,856 - 178,387,280 (+)	NCBI
mRatBN7.2	2	176,034,283 - 176,089,702 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446133	(Get FASTA)	NCBI Sequence Viewer
	XP_006232620	(Get FASTA)	NCBI Sequence Viewer
	XP_006232621	(Get FASTA)	NCBI Sequence Viewer
	XP_006232622	(Get FASTA)	NCBI Sequence Viewer
	XP_006232625	(Get FASTA)	NCBI Sequence Viewer
	XP_008759344	(Get FASTA)	NCBI Sequence Viewer
	XP_017446066	(Get FASTA)	NCBI Sequence Viewer
	XP_017446067	(Get FASTA)	NCBI Sequence Viewer
	XP_017446069	(Get FASTA)	NCBI Sequence Viewer
	XP_038957482	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK28305	(Get FASTA)	NCBI Sequence Viewer
	EDM00543	(Get FASTA)	NCBI Sequence Viewer
	EDM00544	(Get FASTA)	NCBI Sequence Viewer
	EDM00545	(Get FASTA)	NCBI Sequence Viewer
	EDM00546	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016034.2
	ENSRNOP00000074528.1
	ENSRNOP00000085336.1
GenBank Protein	P62819	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_446133 ⟸ NM_053681
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_006232621 ⟸ XM_006232559
- Peptide Label:	isoform X3
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_006232622 ⟸ XM_006232560
- Peptide Label:	isoform X3
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_006232620 ⟸ XM_006232558
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A319 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASCASGAALVRMTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRE CDYNKFMSVLDTNKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_006232625 ⟸ XM_006232563
- Peptide Label:	isoform X3
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_008759344 ⟸ XM_008761122
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K8A2 (UniProtKB/TrEMBL), A6J6P3 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVSPLPVRMTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYN KFMSVLDTNKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_017446067 ⟸ XM_017590578
- Peptide Label:	isoform X3
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_017446066 ⟸ XM_017590577
- Peptide Label:	isoform X3
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

RefSeq Acc Id:	XP_017446069 ⟸ XM_017590580
- Peptide Label:	isoform X3
- UniProtKB:	P62819 (UniProtKB/Swiss-Prot), A6J6P6 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDT NKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ hide sequence

Ensembl Acc Id:

ENSRNOP00000016034 ⟸ ENSRNOT00000016034

Ensembl Acc Id:

ENSRNOP00000074528 ⟸ ENSRNOT00000078351

RefSeq Acc Id:	XP_038957482 ⟸ XM_039101554
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K8A2 (UniProtKB/TrEMBL), A6J6P3 (UniProtKB/TrEMBL), A0A8L2Q7T6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000085336 ⟸ ENSRNOT00000108343

Protein Domains

EF-hand S100/CaBP-9k-type calcium binding subdomain

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P62819-F1-model_v2	AlphaFold	P62819	1-101	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691507

Promoter ID:

EPDNEW_R2032

Type:

single initiation site

Name:

S100a3_1

Description:

S100 calcium binding protein A3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	189,993,280 - 189,993,340	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620260	AgrOrtholog
BioCyc Gene	G2FUF-52332	BioCyc
Ensembl Genes	ENSRNOG00000012008	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016034.3	UniProtKB/TrEMBL
	ENSRNOT00000078351.2	UniProtKB/TrEMBL
	ENSRNOT00000108343.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S-100_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S100/CaBP-9k_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S100_Ca-bd_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:114216	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	114216	ENTREZGENE
PANTHER	PTHR11639:SF12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S100 CALCIUM-BINDING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	S_100	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	S100a3	PhenoGen
PROSITE	S100_CABP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012008	RatGTEx
SMART	S_100	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K8A2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A319	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q7T6	ENTREZGENE, UniProtKB/TrEMBL
	A6J6P3	ENTREZGENE, UniProtKB/TrEMBL
	A6J6P6	ENTREZGENE, UniProtKB/TrEMBL
	P62819	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	P56566	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	S100a3	S100 calcium binding protein A3			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	S100a3	S100 calcium binding protein A3			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_product	member of the EF-hand superfamily of Ca(2+)-binding proteins	737649

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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