Exoc8 (exocyst complex component 8) - Rat Genome Database

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Gene: Exoc8 (exocyst complex component 8) Rattus norvegicus
Analyze
Symbol: Exoc8
Name: exocyst complex component 8
RGD ID: 620245
Description: Predicted to enable phosphatidylinositol binding activity and small GTPase binding activity. Predicted to be involved in several processes, including Golgi to plasma membrane transport; endosome organization; and extracellular matrix disassembly. Predicted to act upstream of or within exocytosis. Located in cell leading edge. Part of exocyst. Orthologous to human EXOC8 (exocyst complex component 8); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Exo84; exocyst complex 84 kDa subunit; exocyst complex 84-kDa subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,752,387 - 69,754,876 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1969,727,231 - 69,804,820 (-)EnsemblGRCr8
mRatBN7.21952,855,010 - 52,857,499 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,852,578 - 52,857,491 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1959,639,787 - 59,642,276 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,490,839 - 60,493,328 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,566,254 - 62,568,743 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,647,305 - 57,649,794 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,647,291 - 57,649,827 (-)Ensemblrn6Rnor6.0
Rnor_5.01968,360,544 - 68,363,033 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41955,066,272 - 55,068,761 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1952,222,177 - 52,224,666 (-)NCBICelera
RGSC_v3.11955,071,156 - 55,073,642 (-)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Subunit structure of the mammalian exocyst complex. Kee Y, etal., Proc Natl Acad Sci U S A 1997 Dec 23;94(26):14438-43.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. SH3BP1, an exocyst-associated RhoGAP, inactivates Rac1 at the front to drive cell motility. Parrini MC, etal., Mol Cell. 2011 Jun 10;42(5):650-61. doi: 10.1016/j.molcel.2011.03.032.
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. An aPKC-exocyst complex controls paxillin phosphorylation and migration through localised JNK1 activation. Rosse C, etal., PLoS Biol. 2009 Nov;7(11):e1000235. Epub 2009 Nov 3.
Additional References at PubMed
PMID:12954101   PMID:14525976   PMID:15920473   PMID:19946888   PMID:24056301   PMID:24344185   PMID:26582389   PMID:30053369  


Genomics

Comparative Map Data
Exoc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,752,387 - 69,754,876 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1969,727,231 - 69,804,820 (-)EnsemblGRCr8
mRatBN7.21952,855,010 - 52,857,499 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,852,578 - 52,857,491 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1959,639,787 - 59,642,276 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,490,839 - 60,493,328 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,566,254 - 62,568,743 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,647,305 - 57,649,794 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,647,291 - 57,649,827 (-)Ensemblrn6Rnor6.0
Rnor_5.01968,360,544 - 68,363,033 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41955,066,272 - 55,068,761 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1952,222,177 - 52,224,666 (-)NCBICelera
RGSC_v3.11955,071,156 - 55,073,642 (-)NCBI
Cytogenetic Map19q12NCBI
EXOC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,332,753 - 231,337,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,332,753 - 231,337,852 (-)Ensemblhg38GRCh38
GRCh371231,468,499 - 231,473,598 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,535,103 - 229,540,201 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341227,775,217 - 227,780,313NCBI
Celera1204,733,352 - 204,738,448 (-)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1201,951,802 - 201,956,897 (-)NCBIHuRef
CHM1_11232,742,131 - 232,747,227 (-)NCBICHM1_1
T2T-CHM13v2.01230,716,003 - 230,721,102 (-)NCBIT2T-CHM13v2.0
Exoc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,617,038 - 125,624,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8125,619,847 - 125,624,444 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388124,890,299 - 124,897,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,893,108 - 124,897,705 (-)Ensemblmm10GRCm38
MGSCv378127,414,199 - 127,421,605 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368127,779,198 - 127,783,795 (-)NCBIMGSCv36mm8
Celera8129,198,972 - 129,206,398 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.82NCBI
Exoc8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554927,477,015 - 7,479,165 (+)Ensembl
ChiLan1.0NW_0049554927,476,866 - 7,481,186 (+)NCBIChiLan1.0ChiLan1.0
EXOC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2117,866,326 - 17,871,305 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,061,958 - 18,070,969 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01206,884,334 - 206,889,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11211,908,975 - 211,914,100 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,911,802 - 211,913,979 (-)EnsemblpanPan2panpan1.1
EXOC8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.148,133,526 - 8,138,185 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,133,670 - 8,135,853 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha48,125,862 - 8,130,738 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.048,158,970 - 8,163,846 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.148,162,330 - 8,167,207 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.048,284,329 - 8,289,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.048,512,727 - 8,517,604 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Exoc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,238,232 - 43,240,797 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,403,458 - 19,405,197 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,403,458 - 19,407,202 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,192,434 - 59,197,542 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11459,192,345 - 59,197,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21463,861,048 - 63,866,149 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12568,594,174 - 68,599,236 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2568,596,957 - 68,599,134 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605570,502,324 - 70,507,389 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,397,673 - 18,399,823 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477518,397,418 - 18,403,669 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Exoc8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11744,406,120 - 44,410,520 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:19
Count of miRNA genes:16
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000026757
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 355 192 11 141 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026757   ⟹   ENSRNOP00000026757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,748,372 - 69,754,885 (-)Ensembl
mRatBN7.2 Ensembl1952,852,578 - 52,857,491 (-)Ensembl
Rnor_6.0 Ensembl1957,647,291 - 57,649,827 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000138617   ⟹   ENSRNOP00000101058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,727,231 - 69,804,820 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153061   ⟹   ENSRNOP00000102714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,738,777 - 69,762,954 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157508   ⟹   ENSRNOP00000112365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,750,189 - 69,762,762 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170200   ⟹   ENSRNOP00000108001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,748,370 - 69,804,486 (-)Ensembl
RefSeq Acc Id: NM_139043   ⟹   NP_620612
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,752,387 - 69,754,876 (-)NCBI
mRatBN7.21952,855,010 - 52,857,499 (-)NCBI
Rnor_6.01957,647,305 - 57,649,794 (-)NCBI
Rnor_5.01968,360,544 - 68,363,033 (-)NCBI
RGSC_v3.41955,066,272 - 55,068,761 (-)RGD
Celera1952,222,177 - 52,224,666 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_620612 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC01581 (Get FASTA)   NCBI Sequence Viewer  
  EDL96746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026757
  ENSRNOP00000026757.1
GenBank Protein O54924 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620612   ⟸   NM_139043
- UniProtKB: O54924 (UniProtKB/Swiss-Prot),   A6KJ24 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026757   ⟸   ENSRNOT00000026757
Ensembl Acc Id: ENSRNOP00000102714   ⟸   ENSRNOT00000153061
Ensembl Acc Id: ENSRNOP00000101058   ⟸   ENSRNOT00000138617
Ensembl Acc Id: ENSRNOP00000112365   ⟸   ENSRNOT00000157508
Ensembl Acc Id: ENSRNOP00000108001   ⟸   ENSRNOT00000170200
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54924-F1-model_v2 AlphaFold O54924 1-716 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701244
Promoter ID:EPDNEW_R11766
Type:multiple initiation site
Name:Exoc8_1
Description:exocyst complex component 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01957,649,729 - 57,649,789EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620245 AgrOrtholog
BioCyc Gene G2FUF-5227 BioCyc
Ensembl Genes ENSRNOG00000019766 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000071599 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000026757 ENTREZGENE
  ENSRNOT00000026757.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.58.1210 UniProtKB/Swiss-Prot
  1.20.58.1220 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
InterPro Cullin_repeat-like_dom_sf UniProtKB/Swiss-Prot
  Exo84 UniProtKB/Swiss-Prot
  Exo84_C UniProtKB/Swiss-Prot
  Exo84_C_1 UniProtKB/Swiss-Prot
  Exo84_C_2 UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
KEGG Report rno:245709 UniProtKB/Swiss-Prot
NCBI Gene 245709 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 8 UniProtKB/Swiss-Prot
  PTHR21426 UniProtKB/Swiss-Prot
Pfam Exo84_C UniProtKB/Swiss-Prot
  Vps51 UniProtKB/Swiss-Prot
PhenoGen Exoc8 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019766 RatGTEx
  ENSRNOG00000071599 RatGTEx
SMART SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF74788 UniProtKB/Swiss-Prot
UniProt A6KJ24 ENTREZGENE, UniProtKB/TrEMBL
  EXOC8_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-12-06 Exoc8  exocyst complex component 8  Exo84  exocyst complex 84-kDa subunit  Symbol and Name updated 1299863 APPROVED
2002-08-07 Exo84  exocyst complex 84-kDa subunit      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression broadly expressed 69988
gene_protein 84 kDa 69988