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Gene: Dlgap2 (DLG associated protein 2) Rattus norvegicus

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Symbol:

Dlgap2

Name:

DLG associated protein 2

RGD ID:

620224

Description:

Enables protein domain specific binding activity. Predicted to be involved in modulation of chemical synaptic transmission. Located in dendritic spine. Orthologous to human DLGAP2 (DLG associated protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DAP-2; discs large homolog associated protein 2; discs large homolog-associated protein 2; discs, large (Drosophila) homolog-associated protein 2; disks large-associated protein 2; postsynaptic density 95; PSD-95/SAP90-associated protein-2; PSD-95/SAP90-binding protein 2; SAP90/PSD-95-associated protein 2; SAPAP2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DLGAP2 (DLG associated protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Dlgap2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dlgap2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DLGAP2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DLGAP2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dlgap2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DLGAP2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DLGAP2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dlgap2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dlgap2 (DLG associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Dlgap2 (DLG associated protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DLGAP2 (DLG associated protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dlgap2a (discs, large (Drosophila) homolog-associated protein 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dlgap2a (discs, large (Drosophila) homolog-associated protein 2a)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	vlc	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	dlgap2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	dlgap2b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	dlgap2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dlgap2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	81,489,059 - 82,198,693 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	81,494,649 - 82,198,684 (-)	Ensembl				GRCr8
mRatBN7.2	16	74,786,771 - 75,496,402 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	74,791,509 - 75,496,407 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	80,070,840 - 80,774,723 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	83,524,409 - 84,228,270 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	78,773,458 - 79,476,474 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	79,872,238 - 80,596,977 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	79,872,323 - 79,973,877 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	79,447,602 - 80,163,277 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	79,613,016 - 80,328,220 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	72,609,167 - 73,309,082 (-)	NCBI		Celera
RGSC_v3.1	16	79,613,280 - 80,328,485 (-)	NCBI
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-cotinine (ISO)

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

choline (ISO)

Cuprizon (EXP)

dichloroacetic acid (ISO)

dimethylarsinic acid (EXP)

disodium selenite (ISO)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

ibuprofen (EXP)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

levonorgestrel (ISO)

memantine (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-Nitrosopyrrolidine (ISO)

Nor-9-carboxy-delta9-THC (ISO)

paracetamol (EXP,ISO)

sodium arsenite (ISO)

streptozocin (EXP)

testosterone undecanoate (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

troglitazone (EXP)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

GDP metabolic process (IEA)

GMP metabolic process (IEA)

modulation of chemical synaptic transmission (IBA,ISO)

neuron-neuron synaptic transmission (NAS)

signaling (IEA)

Cellular Component

dendrite (IDA)

dendritic spine (IDA)

glutamatergic synapse (IBA,ISO)

neurofilament (NAS)

plasma membrane (IEA)

postsynaptic density (IEA)

postsynaptic density, intracellular component (ISO)

postsynaptic membrane (NAS)

postsynaptic specialization (IBA)

synapse (IEA)

Molecular Function

GMP kinase activity (NAS)

molecular adaptor activity (IBA)

protein binding (IPI,ISO)

protein domain specific binding (IDA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Three isoforms of synaptic scaffolding molecule and their characterization. Multimerization between the isoforms and their interaction with N-methyl-D-aspartate receptors and SAP90/PSD-95-associated protein.	Hirao K, etal., J Biol Chem 2000 Jan 28;275(4):2966-72.
3.	Differential expression of isoforms of PSD-95 binding protein (GKAP/SAPAP1) during rat brain development.	Kawashima N, etal., FEBS Lett 1997 Dec 1;418(3):301-4.
4.	SNX26, a GTPase-activating protein for Cdc42, interacts with PSD-95 protein and is involved in activity-dependent dendritic spine formation in mature neurons.	Kim Y, etal., J Biol Chem. 2013 Oct 11;288(41):29453-66. doi: 10.1074/jbc.M113.468801. Epub 2013 Sep 3.
5.	Sharpin, a novel postsynaptic density protein that directly interacts with the shank family of proteins.	Lim S, etal., Mol Cell Neurosci 2001 Feb;17(2):385-97.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	CRIPT, a novel postsynaptic protein that binds to the third PDZ domain of PSD-95/SAP90.	Niethammer M, etal., Neuron 1998 Apr;20(4):693-707.
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	DAP-1, a novel protein that interacts with the guanylate kinase-like domains of hDLG and PSD-95.	Satoh K, etal., Genes Cells. 1997 Jun;2(6):415-24.
13.	SAPAPs. A family of PSD-95/SAP90-associated proteins localized at postsynaptic density.	Takeuchi M, etal., J Biol Chem 1997 May 2;272(18):11943-51.
14.	MAGUIN, a novel neuronal membrane-associated guanylate kinase-interacting protein.	Yao I, etal., J Biol Chem 1999 Apr 23;274(17):11889-96.
15.	Eye opening induces a rapid dendritic localization of PSD-95 in central visual neurons.	Yoshii A, etal., Proc Natl Acad Sci U S A 2003 Feb 4;100(3):1334-9.

Additional References at PubMed

PMID:7569905	PMID:9786987	PMID:12675619	PMID:16332687	PMID:16598705	PMID:16914526	PMID:16990791	PMID:19793403	PMID:21865455	PMID:22871113	PMID:24585759	PMID:25071926
PMID:29476059	PMID:34818135

Genomics

Comparative Map Data

Dlgap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	81,489,059 - 82,198,693 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	81,494,649 - 82,198,684 (-)	Ensembl				GRCr8
mRatBN7.2	16	74,786,771 - 75,496,402 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	74,791,509 - 75,496,407 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	80,070,840 - 80,774,723 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	83,524,409 - 84,228,270 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	78,773,458 - 79,476,474 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	79,872,238 - 80,596,977 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	79,872,323 - 79,973,877 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	79,447,602 - 80,163,277 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	79,613,016 - 80,328,220 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	72,609,167 - 73,309,082 (-)	NCBI		Celera
RGSC_v3.1	16	79,613,280 - 80,328,485 (-)	NCBI
Cytogenetic Map	16	q12.5	NCBI

DLGAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	737,628 - 1,708,476 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	737,628 - 1,708,476 (+)	Ensembl			hg38	GRCh38
GRCh37	8	687,628 - 1,656,642 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	1,436,976 - 1,644,049 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	1,436,975 - 1,644,047	NCBI
Celera	8	1,394,347 - 1,599,502 (+)	NCBI		Celera
Cytogenetic Map	8	p23.3	NCBI
HuRef	8	1,267,051 - 1,471,555 (+)	NCBI		HuRef
CHM1_1	8	1,442,343 - 1,656,072 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	529,208 - 1,487,141 (+)	NCBI		T2T-CHM13v2.0

Dlgap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	14,145,793 - 14,903,426 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	14,145,865 - 14,897,680 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	14,095,776 - 14,853,426 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	14,095,865 - 14,847,680 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	14,095,875 - 14,847,687 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	14,095,852 - 14,847,657 (+)	NCBI		MGSCv36	mm8
Celera	8	14,255,751 - 15,011,554 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	6.51	NCBI

Dlgap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	57,964,105 - 58,421,392 (-)	Ensembl
ChiLan1.0	NW_004955403	57,965,571 - 58,493,946 (-)	NCBI	ChiLan1.0	ChiLan1.0

DLGAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	15,420,502 - 16,422,184 (+)	NCBI		NHGRI_mPanPan1-v2
Mhudiblu_PPA_v0	8	5,661,423 - 6,661,559 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	861,982 - 1,603,678 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	759,261 - 1,596,858 (+)	Ensembl			panPan2	panpan1.1

DLGAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	30,214,555 - 30,842,384 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	30,214,947 - 30,835,991 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	30,915,053 - 31,607,732 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	30,178,682 - 30,869,610 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	30,178,589 - 30,869,356 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	30,145,661 - 30,779,636 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	30,020,698 - 30,718,335 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	30,034,453 - 30,727,882 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dlgap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	586,035 - 958,050 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936615	316,449 - 956,192 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936615	837,217 - 932,487 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DLGAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	32,600,234 - 33,267,312 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	32,600,188 - 33,267,319 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	37,078,011 - 37,746,896 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DLGAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	1,304,284 - 1,380,010 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	42,150,269 - 43,266,697 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dlgap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624861	419,558 - 939,456 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624861	419,427 - 939,553 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dlgap2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	68,968,053 - 69,104,528 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dlgap2
5028 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	46
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000057845
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	59428714	91442908	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	59428714	91442908	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	59428714	91442908	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat
1298527	Arunc2	Aerobic running capacity QTL 2	2.9		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	75235285	81732231	Rat

Markers in Region

D16Rat48

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	81,732,077 - 81,732,231 (+)	Marker Load Pipeline
mRatBN7.2	16	75,029,810 - 75,029,966 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,115,641 - 80,115,794	NCBI	Rnor6.0
Rnor_5.0	16	79,690,255 - 79,690,408	UniSTS	Rnor5.0
RGSC_v3.4	16	79,850,042 - 79,850,195	UniSTS	RGSC3.4
RGSC_v3.4	16	79,850,041 - 79,850,195	RGD	RGSC3.4
Celera	16	72,845,336 - 72,845,489	UniSTS
RGSC_v3.1	16	79,850,307 - 79,850,460	RGD
RH 3.4 Map	16	730.4	UniSTS
RH 3.4 Map	16	730.4	RGD
SHRSP x BN Map	16	45.5099	RGD
SHRSP x BN Map	16	45.5099	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

D16Rat15

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	81,928,647 - 81,928,782 (+)	Marker Load Pipeline
mRatBN7.2	16	75,226,397 - 75,226,532 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,316,290 - 80,316,424	NCBI	Rnor6.0
Rnor_5.0	16	79,886,331 - 79,886,465	UniSTS	Rnor5.0
RGSC_v3.4	16	80,046,991 - 80,047,126	RGD	RGSC3.4
RGSC_v3.4	16	80,046,992 - 80,047,126	UniSTS	RGSC3.4
Celera	16	73,041,297 - 73,041,431	UniSTS
RGSC_v3.1	16	80,047,257 - 80,047,391	RGD
RH 3.4 Map	16	723.1	RGD
RH 3.4 Map	16	723.1	UniSTS
RH 2.0 Map	16	841.4	RGD
SHRSP x BN Map	16	45.5	RGD
FHH x ACI Map	16	42.3699	RGD
Cytogenetic Map	16	q12.5	UniSTS

D16Got89

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,447,112 - 75,447,243 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,548,024 - 80,548,154	NCBI	Rnor6.0
Rnor_5.0	16	80,114,125 - 80,114,255	UniSTS	Rnor5.0
RGSC_v3.4	16	80,279,180 - 80,279,311	RGD	RGSC3.4
RGSC_v3.4	16	80,279,181 - 80,279,311	UniSTS	RGSC3.4
Celera	16	73,260,873 - 73,261,003	UniSTS
RGSC_v3.1	16	80,279,446 - 80,279,576	RGD
RH 3.4 Map	16	737.6	UniSTS
RH 3.4 Map	16	737.6	RGD
RH 2.0 Map	16	874.8	RGD
Cytogenetic Map	16	q12.5	UniSTS

D16Got84

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,217,693 - 75,217,952 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,307,586 - 80,307,844	NCBI	Rnor6.0
Rnor_5.0	16	79,877,627 - 79,877,885	UniSTS	Rnor5.0
RGSC_v3.4	16	80,038,257 - 80,038,753	RGD	RGSC3.4
RGSC_v3.4	16	80,038,288 - 80,038,546	UniSTS	RGSC3.4
Celera	16	73,032,593 - 73,032,851	UniSTS
RGSC_v3.1	16	80,038,553 - 80,038,811	RGD
RH 3.4 Map	16	727.8	RGD
RH 3.4 Map	16	727.8	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

32.MMHAP64FRC11.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,208,366 - 75,208,553 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,298,259 - 80,298,445	NCBI	Rnor6.0
Rnor_5.0	16	79,868,300 - 79,868,486	UniSTS	Rnor5.0
RGSC_v3.4	16	80,028,961 - 80,029,147	UniSTS	RGSC3.4
Celera	16	73,023,266 - 73,023,452	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH144459

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,112,623 - 75,112,789 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,201,326 - 80,201,491	NCBI	Rnor6.0
Rnor_5.0	16	79,772,884 - 79,773,049	UniSTS	Rnor5.0
RGSC_v3.4	16	79,932,810 - 79,932,975	UniSTS	RGSC3.4
Celera	16	72,927,605 - 72,927,770	UniSTS
RH 3.4 Map	16	729.4	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH138324

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	75,001,743 - 75,001,880 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	80,087,458 - 80,087,594	NCBI	Rnor6.0
Rnor_5.0	16	79,662,072 - 79,662,208	UniSTS	Rnor5.0
RGSC_v3.4	16	79,821,978 - 79,822,114	UniSTS	RGSC3.4
Celera	16	72,817,272 - 72,817,408	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	2	17	150	50	44	21	22	21	6	114	64	5	129	14	65	23	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U67138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057845 ⟹ ENSRNOP00000054654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 81,627,052 (-)	Ensembl
mRatBN7.2 Ensembl	16	74,791,509 - 74,924,781 (-)	Ensembl
Rnor_6.0 Ensembl	16	79,872,514 - 79,973,735 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086896 ⟹ ENSRNOP00000069108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 82,198,684 (-)	Ensembl
mRatBN7.2 Ensembl	16	74,791,509 - 75,496,249 (-)	Ensembl
Rnor_6.0 Ensembl	16	79,872,323 - 79,973,877 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107787 ⟹ ENSRNOP00000086979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 82,198,581 (-)	Ensembl
mRatBN7.2 Ensembl	16	74,791,509 - 75,496,407 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117188 ⟹ ENSRNOP00000080482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 82,198,581 (-)	Ensembl
mRatBN7.2 Ensembl	16	74,791,509 - 75,496,407 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123056 ⟹ ENSRNOP00000109380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 82,050,275 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126131 ⟹ ENSRNOP00000107136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 81,938,820 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138999 ⟹ ENSRNOP00000104191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 82,198,467 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162694 ⟹ ENSRNOP00000111868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,494,649 - 81,938,718 (-)	Ensembl

RefSeq Acc Id:

NM_053901 ⟹ NP_446353

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,495,374 - 82,198,622 (-)	NCBI
mRatBN7.2	16	74,793,098 - 75,496,386 (-)	NCBI
Rnor_6.0	16	79,872,238 - 80,596,977 (-)	NCBI
Rnor_5.0	16	79,447,602 - 80,163,277 (-)	NCBI
RGSC_v3.4	16	79,613,016 - 80,328,220 (-)	RGD
Celera	16	72,609,167 - 73,309,082 (-)	RGD

Sequence:

show sequence

TTTCGATTCGCCTGAACAGATGCGGATCGACGCACAGACCCAAGGATCTCAAGCTTGGGAGCTG
GCGGCAGTGCTGTGCGCGCCGCCTGGCCTGAGGGGTGGCCACCTTGCCATGTCGCTCCGCACCC
ACTGAACTAGGAAAGCCCAAGGATGTCCGCTCTGAGGAAGGCTTCCCCACCATCTGAGGCCCGG
CCATAGTACTACGCGATCTCACAGCAGCTTGCGAACCCCAGCCTGCACCTTGCCAGCCAAAATG
GGGACGGCTCAGGTTCTGCCCGGCATTCTGCAGAAGCATTGCTGCATCTTACCAGACAGGAACA
CAGAGTCTCAGTGCACCCTTTGCGGAGAGCCAGAAGAGGAGGAAGGAGGAGACTTGGCCCAGCC
GGGCCTCAGCTTCCCGGGCCCGGCAGAAGAGGACATAGACCAGCAGTACTCATGGTCCCCAACG
CAGCACTTCAGTGAAGAGAGGTACTCACCCGCACCCAGGAACATGAAAGGGTTAACTGGAAGCC
GGAACCAGCCTCAGCTGTGTGTGGGTCACACCTGTGGCCTGTCGCCCACTGACGAGTGTGAGCA
CCCCCATGATCACGTGCGTCATGGGCCAGACGTGCGGCAACCTTATCTTCTCAGCCCAGCCGAG
AGCTGCCCAATGGACCACCACCGCTGCTCACCCAGGAGCTCCGTCCACTCAGAGTGTATGATGA
TGCCTGTGATGTTGGGCGACCATGTGTCCAGCAGCACCTTCCCCAGAATGCACTACAGTTCACA
CTACGACACGAGGGATGACTGTGCCACGTCCCACGCGAGTACCAAGGTAAACCGCATTCCCGCC
AACCTTTTAGACCAGTTTGAGAAACAGCTACCCCTGCACCGGGATGGTTTCCACACACTGCAGT
ACCACAGGGCCTCAGCTGCCACAGAACAGCGAAATGAGAGTCCAGGCAGAATCAGGCATCTGGT
CCACTCCGTCCAGAAACTCTTTACCAAGTCTCATTCTTTGGAGGGATCGTCCAAAAGCAACATC
AATGGGACCAAGAGCGAGGGTCGGATGGATGACCACCACCAGAGTCACCTTTCCAAACACAGCA
AACGGAGTAAGAGCAAGGAGCGGAAGCCAGAGAGCAAGCACAAGTCTGGTATGAGCAGCTGGTG
GAGTTCCGATGACAACCTGGACAGTGACAGCACATACCGGACACCCAGCGTGGCCCACCGCCAC
CACATGGACCACATCCCACACTGCTACCCTGAGGCACTGCAGAGCCCGTTTGGGGACCTCTCAC
TAAAGACTTCCAAAAGCAACAGTGATGTTAAGTGTTCCGCCTGTGAAGGCTTGGCCCTCACGCC
AGACACCAGGTACATGAAGCGTAGCTCCTGGTCCACGCTCACGGTGAGCCAGGCTAAGGAGGCC
TACCGCAAGAGCTCCCTGAACTTGGACAAGCCCCTGGTCCACCCAGAGATCAAGCCTTCCTTGC
AGCCATGCCACTACCTCCAGGTGCCTCAGGACGATTGGGGTGCATACCCTACAGGCGGCAAAGA
GGAGGAGATCCCCTGCCGTAGGATGAGGAGCGGCAGCTACATAAAAGCCATGGGTGACGAGGAG
AGTGGGGAATCAGACTCCAGCCCCAAAACATCCCCGACGGTGGCCCTCCGGCCGGAGCCGCTGC
TGAAGTCCATCATACAAAGACCACTTGGAGACCACCAAACCCAGAGCTACCTGCAAGCTGCCAC
TGAGGTGCCTGTCGGTCACAGCCTGGACCCATCAGTCAACTACAACTCTCCGAAGTTCCGGTCC
AGAAACCAGAGCTACATGCGGGCTGTGAGCACCCTGAGCCAAGCCAGCTGTGTGAGCCAGATGA
GTGAAGCGGAAGTTAATGGGCAGTTCGAGTCAGTGTGTGAATCTGTCTTCAGCGAAGTCGAATC
TCAGGCCATGGATGCCCTTGACCTTCCCGGGTGTTTCCGAACAAGGAGTCACAGCTACCTTCGA
GCCATCCAAGCTGGTTACTCCCAAGACGATGAATGTATTCCCGTGATGACACCGTCCAACATGA
CGTCAACCATCAGGTCAACAGCAGCTGTCTCCTACACAAATTATAAGAAGACGCCTCCCCCGGT
GCCTCCACGGACCACCTCCAAGCCTCTGATCTCTGTGACGGCCCAGAGCAGCACGGAATCCACA
CAGGATGCCTACCAGGACAGCCGTGCCCAGAGGATGTCCCCATGGCCCCAAGACAGCCGTGGCG
GCCTCTACAACTCCATGGACAGTCTAGACAGCAACAAGGCCATGAATTTGGCTCTGGAGTCAGC
GGCAGCTCAGCGCCACGCGGCTGACACTCAGAGCAGCTCCACAAGGAGCATTGACAAGGCGGTC
CTGGTATCCAAGGCTGAAGAGCTCCTCAAAAGCCGTTGCTCCTCCATCGGGGTCCAGGATTCTG
AATTCCCTGATCATCAACCCTACCCAAGGTCAGATGTAGAGACAGCCACGGATTCCGACACGGA
GAGCAGAGGCCTACGGGAGTACCACTCTGTAGGCGTGCAAGTGGAAGACGAAAAACGGCACGGC
CGTTTCAAGCGTTCCAACAGCGTCACAGCTGCTGTGCAGGCTGACTTAGAGTTGGAGGGCTTCC
CTGGGCATGTCAGCATGGAGGACAAGGGCCTGCAGTTCGGATCCTCCTTCCAGCGACATTCAGA
GCCCAGTACCCCGACCCAGTATGGGGCACTGAGGACTGTGCGGACGCAGGGCCTCTTCAGTTAC
AGGGAGGACTATAGGACACAGGTGGACACTTCTACTCTGCCGCCACCGGATCCCTGGCTGGAGC
CATCCCTGGACACAGTGGAGACCGGGAGGATGTCTCCGTGCCGAAGAGATGGCTCGTGGTTTCT
GAAATTGCTGCACACAGAGACGAAGAAGATGGAAGGCTGGTGCAAAGAGATGGAGAGGGAAGCG
GAAGAAAATGACCTCTCCGAAGAAATTCTAGGAAAGATCAGGAGTGCTGTGGGAAGTGCCCAGC
TGCTCATGTCCCAGAAGTTCCAGCAGTTTTATTGGCTTTGTCAGCAGAACATGGACCCCAGCGC
CATGCCAAGACCGACATCACAGGATCTAGCTGGCTACTGGGATATGCTGCAGCTGTCTGTGGAA
GATGTCAGCATGAAGTTCGATGAACTGCACCAGCTGAAGCTCAATGACTGGAAGATAATGGAGT
CGCCCGAGAGAAAGGAAGAAAGGAAGATCCCCCCTCCAATACCAAAGAAGCCCCCCAAGGGGAA
ATTCCCCATCACAAGGGAAAAGTCCCTGGACCTGCCAGACAGACAGCGCCAGGAAGCCCGGCGC
CGGCTCATGGCAGCCAAGAGAGCTGCCTCGTTCCGCCAGAACTCTGCCACGGAGAGGGCAGACA
GCATCGAGATCTACATCCCCGAGGCCCAGACTCGGCTCTGAGGACCAGAGGTGGCCACACGCAC
CTGGTTTTGTTCTTTTTCACAAAATGCTTGTACAGTTTATTGCCTACCTGGTAGTTTCTGTCTC
ACCCTCCACCGGATTCGCCCTTGCCGTGCTCTCTGCACTGTAGACAGTGGACGCTCCAATTCCT
AGTTTGCTGAGCTCGAGCTCCTGGCAAGACTGACTCTGAAGGACATCGGGCTCCGAGGAACAGG
CCTGGTGAGCCCTGACGTACGTCCCTGTTCTCAGAAGGGCCGCCAAGTGGCCTCTTGAAAATGG
ACCCTA

hide sequence

RefSeq Acc Id:

XM_039094154 ⟹ XP_038950082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,489,059 - 82,198,693 (-)	NCBI
mRatBN7.2	16	74,786,771 - 75,496,402 (-)	NCBI

RefSeq Acc Id:

XM_039094156 ⟹ XP_038950084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,489,059 - 81,941,987 (-)	NCBI
mRatBN7.2	16	74,793,374 - 75,237,922 (-)	NCBI

RefSeq Acc Id:

XM_039094157 ⟹ XP_038950085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,489,059 - 82,198,637 (-)	NCBI
mRatBN7.2	16	74,786,771 - 75,496,402 (-)	NCBI

RefSeq Acc Id:

XM_063275039 ⟹ XP_063131109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,489,059 - 81,868,143 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446353	(Get FASTA)	NCBI Sequence Viewer
	XP_038950082	(Get FASTA)	NCBI Sequence Viewer
	XP_038950084	(Get FASTA)	NCBI Sequence Viewer
	XP_038950085	(Get FASTA)	NCBI Sequence Viewer
	XP_063131109	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB48588	(Get FASTA)	NCBI Sequence Viewer
	EDM08928	(Get FASTA)	NCBI Sequence Viewer
	EDM08929	(Get FASTA)	NCBI Sequence Viewer
	EDM08930	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069108
	ENSRNOP00000104191
	ENSRNOP00000107136
	ENSRNOP00000111868
GenBank Protein	P97837	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446353 ⟸ NM_053901

- UniProtKB:

P97837 (UniProtKB/Swiss-Prot), A0A8I5ZQT2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGTAQVLPGILQKHCCILPDRNTESQCTLCGEPEEEEGGDLAQPGLSFPGPAEEDIDQQYSWSP
TQHFSEERYSPAPRNMKGLTGSRNQPQLCVGHTCGLSPTDECEHPHDHVRHGPDVRQPYLLSPA
ESCPMDHHRCSPRSSVHSECMMMPVMLGDHVSSSTFPRMHYSSHYDTRDDCATSHASTKVNRIP
ANLLDQFEKQLPLHRDGFHTLQYHRASAATEQRNESPGRIRHLVHSVQKLFTKSHSLEGSSKSN
INGTKSEGRMDDHHQSHLSKHSKRSKSKERKPESKHKSGMSSWWSSDDNLDSDSTYRTPSVAHR
HHMDHIPHCYPEALQSPFGDLSLKTSKSNSDVKCSACEGLALTPDTRYMKRSSWSTLTVSQAKE
AYRKSSLNLDKPLVHPEIKPSLQPCHYLQVPQDDWGAYPTGGKEEEIPCRRMRSGSYIKAMGDE
ESGESDSSPKTSPTVALRPEPLLKSIIQRPLGDHQTQSYLQAATEVPVGHSLDPSVNYNSPKFR
SRNQSYMRAVSTLSQASCVSQMSEAEVNGQFESVCESVFSEVESQAMDALDLPGCFRTRSHSYL
RAIQAGYSQDDECIPVMTPSNMTSTIRSTAAVSYTNYKKTPPPVPPRTTSKPLISVTAQSSTES
TQDAYQDSRAQRMSPWPQDSRGGLYNSMDSLDSNKAMNLALESAAAQRHAADTQSSSTRSIDKA
VLVSKAEELLKSRCSSIGVQDSEFPDHQPYPRSDVETATDSDTESRGLREYHSVGVQVEDEKRH
GRFKRSNSVTAAVQADLELEGFPGHVSMEDKGLQFGSSFQRHSEPSTPTQYGALRTVRTQGLFS
YREDYRTQVDTSTLPPPDPWLEPSLDTVETGRMSPCRRDGSWFLKLLHTETKKMEGWCKEMERE
AEENDLSEEILGKIRSAVGSAQLLMSQKFQQFYWLCQQNMDPSAMPRPTSQDLAGYWDMLQLSV
EDVSMKFDELHQLKLNDWKIMESPERKEERKIPPPIPKKPPKGKFPITREKSLDLPDRQRQEAR
RRLMAAKRAASFRQNSATERADSIEIYIPEAQTRL

hide sequence

Ensembl Acc Id:

ENSRNOP00000054654 ⟸ ENSRNOT00000057845

Ensembl Acc Id:

ENSRNOP00000069108 ⟸ ENSRNOT00000086896

RefSeq Acc Id:	XP_038950085 ⟸ XM_039094157
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A4U6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950082 ⟸ XM_039094154
- Peptide Label:	isoform X1
- UniProtKB:	P97837 (UniProtKB/Swiss-Prot), A0A0G2JUI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950084 ⟸ XM_039094156
- Peptide Label:	isoform X3
- UniProtKB:	A6IWE1 (UniProtKB/TrEMBL), F1LSL6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086979 ⟸ ENSRNOT00000107787

Ensembl Acc Id:

ENSRNOP00000080482 ⟸ ENSRNOT00000117188

RefSeq Acc Id:	XP_063131109 ⟸ XM_063275039
- Peptide Label:	isoform X2
- UniProtKB:	F1LSL6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104191 ⟸ ENSRNOT00000138999

Ensembl Acc Id:

ENSRNOP00000107136 ⟸ ENSRNOT00000126131

Ensembl Acc Id:

ENSRNOP00000109380 ⟸ ENSRNOT00000123056

Ensembl Acc Id:

ENSRNOP00000111868 ⟸ ENSRNOT00000162694

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P97837-F1-model_v2	AlphaFold	P97837	1-1059	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620224	AgrOrtholog
BioCyc Gene	G2FUF-10745	BioCyc
Ensembl Genes	ENSRNOG00000012573	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000086896	ENTREZGENE
	ENSRNOT00000126131	ENTREZGENE
	ENSRNOT00000138999	ENTREZGENE
	ENSRNOT00000162694	ENTREZGENE
InterPro	SAPAP	UniProtKB/Swiss-Prot
KEGG Report	rno:116681	UniProtKB/Swiss-Prot
NCBI Gene	116681	ENTREZGENE
PANTHER	PTHR12353	UniProtKB/Swiss-Prot
	PTHR12353:SF3	UniProtKB/Swiss-Prot
Pfam	GKAP	UniProtKB/Swiss-Prot
PhenoGen	Dlgap2	PhenoGen
RatGTEx	ENSRNOG00000012573	RatGTEx
UniProt	A0A0G2JUI3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQT2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4U6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LHR8_RAT	UniProtKB/TrEMBL
	A0ABK0LLR4_RAT	UniProtKB/TrEMBL
	A0ABK0M179_RAT	UniProtKB/TrEMBL
	A0ABK0M3M6_RAT	UniProtKB/TrEMBL
	A6IWE1	ENTREZGENE, UniProtKB/TrEMBL
	A6IWE2_RAT	UniProtKB/TrEMBL
	A6IWE3_RAT	UniProtKB/TrEMBL
	DLGP2_RAT	UniProtKB/Swiss-Prot
	F1LSL6	ENTREZGENE, UniProtKB/TrEMBL
	P97837	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-01	Dlgap2	DLG associated protein 2	Dlgap2	discs large homolog associated protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-27	Dlgap2	discs large homolog associated protein 2	Dlgap2	discs, large (Drosophila) homolog-associated protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Dlgap2	discs, large (Drosophila) homolog-associated protein 2			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Dlgap2	discs, large (Drosophila) homolog-associated protein 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the synaptoneurosome fraction	629555
gene_expression	protein is detected in the superior colliculus and visual cortex	629555
gene_process	increased localization to dendrites is associated with eye opening	629555
gene_process	may play a role in visual neuron development	629555
gene_process	may play a role in maintaining postsynaptic densities by concentrating its components to that area	68237

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD