Nfic (nuclear factor I/C) - Rat Genome Database

Name: Nfic
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Nfic (nuclear factor I/C) Rattus norvegicus

Analyze

Symbol:

Nfic

Name:

nuclear factor I/C

RGD ID:

62016

Description:

Enables cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of DNA-templated transcription. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be active in nucleus. Orthologous to human NFIC (nuclear factor I C); PARTICIPATES IN forkhead class A signaling pathway; INTERACTS WITH 17beta-estradiol; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

nuclear factor 1 C-type; olfactory epithelium nuclear factor I-C

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NFIC (nuclear factor I C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nfic (nuclear factor I/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nfic (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NFIC (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NFIC (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nfic (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NFIC (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NFIC (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nfic (nuclear factor I C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CYP2A13 (cytochrome P450 family 2 subfamily A member 13)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Nfic (nuclear factor I/C)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NFIC (nuclear factor I C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nfic (nuclear factor I/C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nfi-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	NfI	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nfic	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	8,928,423 - 8,963,455 (+)	NCBI		GRCr8
mRatBN7.2	7	8,278,210 - 8,309,936 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,253,361 - 8,309,936 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,168,300 - 11,193,900 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,043,786 - 13,069,386 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,911,186 - 10,936,791 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,151,941 - 11,179,544 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,152,038 - 11,177,664 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,315,473 - 11,346,698 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	9,768,135 - 9,793,584 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	9,788,771 - 9,793,584 (+)	NCBI
Celera	7	6,478,006 - 6,497,550 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-vinylcyclohexene dioxide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetaldehyde (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amiodarone (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clofibrate (ISO)

coumarin (ISO)

crotonaldehyde (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dicrotophos (ISO)

dimethylarsinic acid (EXP)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

glycidol (EXP)

hydrogen cyanide (ISO)

inulin (ISO)

isoprenaline (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

naphthalene (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium cyanide (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

quercetin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

toluene (EXP)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

zebularine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication (IEA)

negative regulation of DNA-templated transcription (IDA)

negative regulation of transcription by RNA polymerase II (ISO)

odontogenesis of dentin-containing tooth (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

fibrillar center (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IDA)

DNA binding (IDA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

double-stranded DNA binding (IDA)

protein binding (IPI,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific double-stranded DNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

forkhead class A signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of NFI-binding sites and cloning of NFI-cDNAs suggest a regulatory role for NFI transcription factors in olfactory neuron gene expression.	Baumeister H, etal., Brain Res Mol Brain Res 1999 Sep 8;72(1):65-79.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Expression, DNA-binding specificity and transcriptional regulation of nuclear factor 1 family proteins from rat.	Osada S, etal., Biochem J 1999 Aug 15;342 ( Pt 1)(21):189-98.
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Gene expression profiles following exposure to a developmental neurotoxicant, Aroclor 1254: pathway analysis for possible mode(s) of action.	Royland JE and Kodavanti PR, Toxicol Appl Pharmacol. 2008 Sep 1;231(2):179-96. Epub 2008 May 6.
11.	Localization of 54 rat genes, and definition of new synteny groups conserved in the human and the rat.	Szpirer C, etal., Mamm Genome 2000 Sep;11(9):729-35

Additional References at PubMed

PMID:1524678	PMID:9056636	PMID:12529411	PMID:16147868	PMID:19706729	PMID:25074584	PMID:25138274	PMID:31432308

Genomics

Comparative Map Data

Nfic
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	8,928,423 - 8,963,455 (+)	NCBI		GRCr8
mRatBN7.2	7	8,278,210 - 8,309,936 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,253,361 - 8,309,936 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,168,300 - 11,193,900 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,043,786 - 13,069,386 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,911,186 - 10,936,791 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,151,941 - 11,179,544 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,152,038 - 11,177,664 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,315,473 - 11,346,698 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	9,768,135 - 9,793,584 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	9,788,771 - 9,793,584 (+)	NCBI
Celera	7	6,478,006 - 6,497,550 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

NFIC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	3,359,630 - 3,469,217 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	3,314,403 - 3,469,217 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	3,359,628 - 3,469,215 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,310,616 - 3,414,603 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	3,317,572 - 3,414,603	NCBI
Celera	19	3,296,412 - 3,400,416 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	3,125,600 - 3,235,130 (+)	NCBI		HuRef
CHM1_1	19	3,359,193 - 3,468,863 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	3,337,764 - 3,447,373 (+)	NCBI		T2T-CHM13v2.0

Nfic
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	81,232,025 - 81,267,753 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	81,232,020 - 81,291,469 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	81,396,191 - 81,431,919 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,396,186 - 81,455,635 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,858,936 - 80,889,918 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,799,320 - 80,830,302 (-)	NCBI		MGSCv36	mm8
Celera	10	82,417,224 - 82,449,357 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Nfic
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,095,450 - 5,139,442 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	5,095,219 - 5,139,561 (-)	NCBI	ChiLan1.0	ChiLan1.0

NFIC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	7,755,864 - 7,868,072 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	6,991,414 - 7,099,918 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	2,387,226 - 2,495,475 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	3,340,343 - 3,446,810 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	3,294,319 - 3,440,417 (+)	Ensembl	panpan1.1		panPan2

NFIC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	55,920,614 - 55,980,307 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	55,914,855 - 56,014,907 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,648,005 - 55,710,684 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,582,480 - 56,645,444 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,572,856 - 56,674,019 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,638,412 - 55,701,049 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	56,122,455 - 56,184,682 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	56,321,153 - 56,383,446 (-)	NCBI		UU_Cfam_GSD_1.0

Nfic
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,871,204 - 215,927,218 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,928,493 - 1,963,502 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,928,661 - 1,963,525 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NFIC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	75,193,342 - 75,297,380 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	75,193,113 - 75,262,490 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	75,687,011 - 75,711,260 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NFIC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	3,128,553 - 3,232,485 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	3,135,480 - 3,227,601 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	5,258,648 - 5,369,419 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nfic
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	5,897,024 - 5,946,453 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	5,896,957 - 5,946,512 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nfic
69 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	39
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000006168
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat

Markers in Region

BF406841

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	8,304,893 - 8,305,129 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,174,503 - 11,174,738	NCBI	Rnor6.0
Rnor_5.0	7	11,341,657 - 11,341,892	UniSTS	Rnor5.0
RGSC_v3.4	7	9,790,423 - 9,790,658	UniSTS	RGSC3.4
Celera	7	6,494,389 - 6,494,624	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	35	22	19	7	19	8	11	46	30	34	11	8
Low	1	8	35	22	12	22			28	5	7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB012233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC094643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF112458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000006168 ⟹ ENSRNOP00000006168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,282,373 - 8,307,996 (+)	Ensembl
Rnor_6.0 Ensembl	7	11,152,038 - 11,177,664 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093863 ⟹ ENSRNOP00000077960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,282,360 - 8,309,936 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097025 ⟹ ENSRNOP00000083709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,282,360 - 8,308,854 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103665 ⟹ ENSRNOP00000090255

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,253,361 - 8,309,936 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106995 ⟹ ENSRNOP00000082074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,288,127 - 8,304,388 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114076 ⟹ ENSRNOP00000084268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,277,347 - 8,309,936 (+)	Ensembl

RefSeq Acc Id:

NM_031567 ⟹ NP_113755

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,933,169 - 8,958,795 (+)	NCBI
mRatBN7.2	7	8,282,425 - 8,308,055 (+)	NCBI
Rnor_6.0	7	11,152,038 - 11,177,664 (+)	NCBI
Rnor_5.0	7	11,315,473 - 11,346,698 (+)	NCBI
RGSC_v3.4	7	9,768,135 - 9,793,584 (+)	RGD
Celera	7	6,478,006 - 6,497,550 (+)	RGD

Sequence:

show sequence

ATGTATTCCTCCCCGCTCTGCCTGACCCAGGATGAGTTCCACCCATTCATCGAGGCTCTGCTGC
CGCATGTGCGTGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGCAAGCGCAAGTACTTCAA
GAAGCACGAGAAGCGCATGTCGAAGGACGAGGAGCGCGCGGTGAAGGATGAACTGCTGGGTGAA
AAGGCCGAGGTGAAGCAGAAGTGGGCGTCACGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGC
CCGAGTGCCGCGAAGACTTCGTACTGGCTGTGACAGGCAAGAAGGCACCAGGCTGTGTGCTGTC
CAACCCGGACCAGAAGGGCAAGATGCGGCGCATCGACTGCCTGCGCCAGGCTGACAAAGTATGG
CGCCTGGACCTGGTCATGGTCATCCTGTTCAAGGGTATCCCACTGGAGAGCACGGACGGCGAGC
GGCTGGTGAAGGCCGCTGCCTGCGCGCACCCCGTGCTGTGTGTGCAGCCGCACCATATTGGCGT
GGCCGTCAAGGAGCTGGACCTGTACCTGGCCTACTTCGTGCGGGAGCGCGATGCGGAGCAGAGC
AGCAGTCCCCGGACAGGAGTGGGCTCAGACCAGGAGGACAGCAAGCCCATTACACTGGACACGA
CAGACTTCCAGGAGAGCTTCGTCACATCTGGCGTGTTCAGTGTCACGGAGCTGATCCAGGTGTC
TCGGACACCTGTGGTGACCGGAACCGGGCCCAACTTCTCCCTGGGAGAGCTGCAGGGCCACCTG
GCATACGACCTGAACCCAGCCAGCGCTGGCATGAGAAGGACTCTACCCAGTACTTCCTCCAGTG
GGAGCAAGCGGCACAAGTCGGGCTCGATGGAGGAGGACGTGGACACGAGCCCTGGCGGAGACTA
CTACACATCACCCAACTCGCCCACGAGTAGCAGCCGCAACTGGACGGAAGACATGGAAGGAGGC
ATCTCATCCCCGGTGAAGAAGACAGAGATGGACAAATCTCCATTCAACAGCCCATCCCCCCAGG
ACTCCCCCCGGCTCTCCAGCTTCACACAGCACCACAGGCCCGTCATCGCGGTACACAGCGGCAT
CGCGCGGAGCCCCCACCCGTCCTCAGCCCTGCACTTCCCTGCCACGCCCATCCTGCCGCAGACA
GCCTCCACCTACTTCCCCCACACTGCCATCCGGTACCCGCCACATCTCAACCCCCAGGACCCAC
TCAAGGATCTGGTGTCCCTGGCCTGCGACCCGGCCACCCAGCAGCCAGGACCGCCTGCTCTCCG
CCCGGCACGTCCCCTGCAAACAGTCCCTTTGTGGGATTAGGACGGAGGGATCCTCTTGCGGGAC
AGTCCTGGTACCTGGGGTAGCGGAGGTTGCCTTCCCACACCTCCTTCATCGCCGGTGGAGTCCC
AGGGTGACAGTCCCAGCCTGCATTTTTGGTGGAAAATTAGACGAGTGAGAAGTCCCCTGCCAAC
TCCCAGCTCAATGGCAATGACAGGAGGAGAAAGGACAAAAGACAAACAAGAAACAAAACCCTTC
CCAACCAAGATGAAAACACATGGGAGCTC

hide sequence

RefSeq Acc Id:

XM_006240850 ⟹ XP_006240912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,933,045 - 8,963,455 (+)	NCBI
mRatBN7.2	7	8,282,296 - 8,309,936 (+)	NCBI
Rnor_6.0	7	11,151,941 - 11,179,544 (+)	NCBI
Rnor_5.0	7	11,315,473 - 11,346,698 (+)	NCBI

Sequence:

show sequence

AGGACGGCGGAGGGAGGAGCGGGAGGGCGGCTGCAAAAATGACTCAGTAAGTTCGGCGGCCGCT
CGGCCTCTGCGCCTCCGGTGCCAGCGCCCCGGGATGTATTCCTCCCCGCTCTGCCTGACCCAGG
ATGAGTTCCACCCATTCATCGAGGCTCTGCTGCCGCATGTGCGTGCCTTCGCCTACACCTGGTT
CAACCTGCAGGCGCGCAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGCATGTCGAAGGACGAG
GAGCGCGCGGTGAAGGATGAACTGCTGGGTGAAAAGGCCGAGGTGAAGCAGAAGTGGGCGTCAC
GGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTGCCGCGAAGACTTCGTACTGGCTGT
GACAGGCAAGAAGGCACCAGGCTGTGTGCTGTCCAACCCGGACCAGAAGGGCAAGATGCGGCGC
ATCGACTGCCTGCGCCAGGCTGACAAAGTATGGCGCCTGGACCTGGTCATGGTCATCCTGTTCA
AGGGTATCCCACTGGAGAGCACGGACGGCGAGCGGCTGGTGAAGGCCGCTGCCTGCGCGCACCC
CGTGCTGTGTGTGCAGCCGCACCATATTGGCGTGGCCGTCAAGGAGCTGGACCTGTACCTGGCC
TACTTCGTGCGGGAGCGCGATGCGGAGCAGAGCAGCAGTCCCCGGACAGGAGTGGGCTCAGACC
AGGAGGACAGCAAGCCCATTACACTGGACACGACAGACTTCCAGGAGAGCTTCGTCACATCTGG
CGTGTTCAGTGTCACGGAGCTGATCCAGGTGTCTCGGACACCTGTGGTGACCGGAACCGGGCCC
AACTTCTCCCTGGGAGAGCTGCAGGGCCACCTGGCATACGACCTGAACCCAGCCAGCGCTGGCA
TGAGAAGGACTCTACCCAGTACTTCCTCCAGTGGGAGCAAGCGGCACAAGTCGGGCTCGATGGA
GGAGGACGTGGACACGAGCCCTGGCGGAGACTACTACACATCACCCAACTCGCCCACGAGTAGC
AGCCGCAACTGGACGGAAGACATGGAAGGAGGCATCTCATCCCCGGTGAAGAAGACAGAGATGG
ACAAATCTCCATTCAACAGCCCATCCCCCCAGGACTCCCCCCGGCTCTCCAGCTTCACACAGCA
CCACAGGCCCGTCATCGCGGTACACAGCGGCATCGCGCGGAGCCCCCACCCGTCCTCAGCCCTG
CACTTCCCTGCCACGCCCATCCTGCCGCAGACAGCCTCCACCTACTTCCCCCACACTGCCATCC
GGTACCCGCCACATCTCAACCCCCAGGACCCACTCAAGGATCTGGTGTCCCTGGCCTGCGACCC
GGCCACCCAGCAGCCAGGACCGTCCTGGTACCTGGGGTAGCGGAGGTTGCCTTCCCACACCTCC
TTCATCGCCGGTGGAGTCCCAGGGTGACAGTCCCAGCCTGCATTTTTGGTGGAAAATTAGACGA
GTGAGAAGTCCCCTGCCAACTCCCAGCTCAATGGCAATGACAGGAGGAGAAAGGACAAAAGACA
AACAAGAAACAAAACCCTTCCCAACCAAGATGAAAACACATGGGAGCTCTGGGTCTCTGTGGCA
CCTACTGCTGATGGCCGACTGGCTGCCCGCAGCTCTTCTGCGCCCCGAAGACCCTGCCATCACC
CACAGACCAGGCCTGGGCAGAATGGATGGGGTGGGCCACCCAGCCAGGCCACCTCTCCCCAAAC
CCCTGCTGCCTGCCACCAACGCCAGCCTCGGGGACCTCTGGCTCTCCCCACCGACAGTGTTTGC
CAAAGACAGGAGGCTGGAGGTGGATGGACGGCACGGTGGGCACCGTCCACGGTGGGCAGAAGAG
GCGCGTGGGAGCCGCCCAGCGCTGGCCCTGCTGGGGACAGACATGCCACACAGGTACTTCGGGA
TCCCCGGGAGGGTCCCGCGTCCAGCCTCCATCCGGGCCCTCTGGCCCCTCTCTCCTTGCGGACC
TCATTTGGAAGGACACATCTCTCTATGCAATTTGTCCCCACCCCACCCCGGCATGAGAGGCCAC
ACAGCTCCCGACCCTCCGGCCTCCTCTCGCACATGGAAAGTATCAGCACTTTGAGAAACAGAGG
TGGGGGAACCGGGGGACCCCCCCACGCCGAGGCCCCTGGAGGCGGGAGGTGCCGCGATCTAAGT
GCCTAGCCCCTCCACCCACCCGCCGTCCACCTCGTCCATTGGGGACACAGAGTGGCCAGGGCAC
CCCCACCCTCGTCTCTGTGTACCGTAGCTCATCACCGCGCACCCTCCAAGCTAGAGAGATGGGA
CCCCAGGGCGGTAGAGCTGGGTGTCCCGAAACCCAGGCTGGGGCTATGCGCCGTCCCCTACACT
TCTGCCAGTGCCTTACTTCCTGGAGACCCACCCTGGGGTACCCCACTGCAGGGGGATACCCCCT
TTGCACTTTGACCCTCCTGATGATGTGGGGCCCAGCACAGGGACCAAGAAGGCTGGTGGAAGTG
CACTGGGACCCCAGGTGGGAGGGCTCTGGGGGTGATGGGGTGACAGGGCGGACTGATGGCCAGA
GTCCCCCATCTGCTATGTGTGCTTCACTGACTAAAAACACTAAGACGGGGGGGGGGGCGGGGGG
CGAGGACCATACCCCAACCCCAGCTCTGCGGCACCCACCTGGGGCCCTATCTTGGATGGCCCAC
TCTGGGAGGGGATGTTGGGTGTTTTAAGGTCACTGAACCTACAAAGGCCCCTCCTCCCCGGCCA
CCCATCTTGGCCCCATCATACCTGGCACTGTCATGTCCCCTCCCTGCGGAGGCCATGGGCCATC
ACCCCAGCAGAGCCCCCAGGGCCAGGCCCCACCCACCTGCCGCCCTCCCTGGGACACTTGTAAG
TACAAAGCTCCCCAAGACTTCCCCAGCCTTTGAGGCCTCAAACCCCCACCATCTGTCTGTCTGT
CCTCAGGGACCCTCCAGAAGGGGGACCATTGGGACACCACAGAGGCCACTGTTCAGATGGGGCT
CAGGCCAGTGGGTAGACCTGGCAAGTCCCCTCTGATCCCCCCAAGTCAGCCAGCTGGGTCCCCC
AGGGGTCAGGACAGAACCAACTATTTACCTAACTGCATGGTGCTTAAGGCCCCTCGACACCCAA
GAGCCCCCTTCCTGCGCCGGGCTGCTGTGTGCATGACAGATCCGCCTACCCACCCACTTCCCTC
ACCGCCTCTACAAAAAAAGGAAAGAAAAAAAAAGGATACACACACACACAAAACCCCCCCATAT
ATATATATATATATATATCCTTACCAAAAAAAAAAAATCCATTATTTCCAAATTTGCACGAACT
TTTTACCACAACATGTGCCTTGCTCTCCCGAGGACAAGTATTAACTTTTAATAATATCCGCGCA
CACAGACGCATGCCCTGCACGCATAGTTACAAACAGACAAGCGATTACATGAAATAAAAAATAA
AATTCAAAA

hide sequence

RefSeq Acc Id:

XM_039078560 ⟹ XP_038934488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,928,423 - 8,963,455 (+)	NCBI
mRatBN7.2	7	8,278,211 - 8,309,936 (+)	NCBI

RefSeq Acc Id:

XM_039078561 ⟹ XP_038934489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,928,423 - 8,963,455 (+)	NCBI
mRatBN7.2	7	8,278,210 - 8,309,936 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_113755	(Get FASTA)	NCBI Sequence Viewer
	XP_006240912	(Get FASTA)	NCBI Sequence Viewer
	XP_038934488	(Get FASTA)	NCBI Sequence Viewer
	XP_038934489	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF23587	(Get FASTA)	NCBI Sequence Viewer
	BAA25293	(Get FASTA)	NCBI Sequence Viewer
	EDL89148	(Get FASTA)	NCBI Sequence Viewer
	EDL89149	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006168.6
	ENSRNOP00000077960
	ENSRNOP00000077960.1
	ENSRNOP00000082074.1
	ENSRNOP00000083709
	ENSRNOP00000083709.1
	ENSRNOP00000084268
	ENSRNOP00000084268.1
	ENSRNOP00000090255.1

RefSeq Acc Id:

NP_113755 ⟸ NM_031567

- UniProtKB:

O70188 (UniProtKB/TrEMBL), A0A8I5ZTI5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE
KAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVW
RLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQS
SSPRTGVGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHL
AYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDMEGG
ISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPATPILPQT
ASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQQPGPPALRPARPLQTVPLWD

hide sequence

RefSeq Acc Id:	XP_006240912 ⟸ XM_006240850
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZR6 (UniProtKB/TrEMBL), A0A8I5ZTI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE KAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVW RLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQS SSPRTGVGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHL AYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDMEGG ISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVHSGIARSPHPSSALHFPATPILPQT ASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQQPGPSWYLG hide sequence

RefSeq Acc Id:

ENSRNOP00000006168 ⟸ ENSRNOT00000006168

RefSeq Acc Id:	XP_038934489 ⟸ XM_039078561
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZTI5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934488 ⟸ XM_039078560
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZYT8 (UniProtKB/TrEMBL), A0A8I6AMP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000077960 ⟸ ENSRNOT00000093863

RefSeq Acc Id:

ENSRNOP00000090255 ⟸ ENSRNOT00000103665

RefSeq Acc Id:

ENSRNOP00000082074 ⟸ ENSRNOT00000106995

RefSeq Acc Id:

ENSRNOP00000083709 ⟸ ENSRNOT00000097025

RefSeq Acc Id:

ENSRNOP00000084268 ⟸ ENSRNOT00000114076

Protein Domains

CTF/NF-I

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O70188-F1-model_v2	AlphaFold	O70188	1-439	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694970

Promoter ID:

EPDNEW_R5495

Type:

initiation region

Name:

Nfic_1

Description:

nuclear factor I/C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,152,009 - 11,152,069	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62016	AgrOrtholog
BioCyc Gene	G2FUF-35031	BioCyc
Ensembl Genes	ENSRNOG00000004505	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006168.8	UniProtKB/TrEMBL
	ENSRNOT00000093863	ENTREZGENE
	ENSRNOT00000093863.1	UniProtKB/TrEMBL
	ENSRNOT00000097025.1	UniProtKB/TrEMBL
	ENSRNOT00000103665.1	UniProtKB/TrEMBL
	ENSRNOT00000106995.1	UniProtKB/TrEMBL
	ENSRNOT00000114076.1	UniProtKB/TrEMBL
InterPro	CTF/NFI	UniProtKB/TrEMBL
	CTF/NFI_DNA-bd-dom	UniProtKB/TrEMBL
	CTF/NFI_DNA-bd_CS	UniProtKB/TrEMBL
	CTF/NFI_DNA-bd_N	UniProtKB/TrEMBL
	MAD_homology1_Dwarfin-type	UniProtKB/TrEMBL
KEGG Report	rno:29228	UniProtKB/TrEMBL
NCBI Gene	29228	ENTREZGENE
PANTHER	CTF_NFI	UniProtKB/TrEMBL
	NUCLEAR FACTOR 1 C-TYPE	UniProtKB/TrEMBL
Pfam	CTF_NFI	UniProtKB/TrEMBL
	MH1	UniProtKB/TrEMBL
	NfI_DNAbd_pre-N	UniProtKB/TrEMBL
PhenoGen	Nfic	PhenoGen
PROSITE	CTF_NFI_1	UniProtKB/TrEMBL
	CTF_NFI_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004505	RatGTEx
SMART	DWA	UniProtKB/TrEMBL
UniProt	A0A8I5ZTI5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZYT8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZR6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMP4	ENTREZGENE, UniProtKB/TrEMBL
	A6K878_RAT	UniProtKB/TrEMBL
	A6K879_RAT	UniProtKB/TrEMBL
	F7EL25_RAT	UniProtKB/TrEMBL
	O70188	ENTREZGENE, UniProtKB/TrEMBL
	Q9QY87_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Nfic	nuclear factor I/C			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_product	member of a family of olfactory epithelium transcription factors	633408

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)