Ppp1r10 (protein phosphatase 1, regulatory subunit 10) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Ppp1r10 (protein phosphatase 1, regulatory subunit 10) Rattus norvegicus
Analyze
Symbol: Ppp1r10
Name: protein phosphatase 1, regulatory subunit 10
RGD ID: 620079
Description: Enables protein phosphatase 1 binding activity and protein phosphatase inhibitor activity. Predicted to be involved in several processes, including RNA polymerase II promoter clearance; negative regulation of cardiac muscle cell apoptotic process; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within transcription elongation by RNA polymerase II. Located in chromatin. Orthologous to human PPP1R10 (protein phosphatase 1 regulatory subunit 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fb19; MHC class I region proline-rich protein CAT53; phosphatase 1 nuclear targeting subunit; Pnuts; putative protein phosphatase 1 nuclear targeting subunit; serine/threonine-protein phosphatase 1 regulatory subunit 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,827,802 - 2,842,418 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl202,827,802 - 2,842,418 (-)EnsemblGRCr8
mRatBN7.2202,822,995 - 2,838,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,822,995 - 2,837,611 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx202,874,774 - 2,889,396 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,879,744 - 2,894,366 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,905,740 - 2,920,511 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,329,677 - 3,344,286 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,329,677 - 3,344,286 (-)Ensemblrn6Rnor6.0
Rnor_5.0205,427,600 - 5,441,809 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4202,940,605 - 2,984,636 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera20248,977 - 263,595 (-)NCBICelera
RGSC_v3.1202,970,906 - 2,984,624 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-dioxane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (ISO)
acetaldehyde  (ISO)
acrylamide  (ISO)
aldrin  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
bathocuproine disulfonic acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-mannitol  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
Diisodecyl phthalate  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
iron dichloride  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-methylformamide  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pyrrolidine dithiocarbamate  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
vanadyl sulfate  (ISO)
vanillin  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Isolation and characterization of PNUTS, a putative protein phosphatase 1 nuclear targeting subunit. Allen PB, etal., J Biol Chem 1998 Feb 13;273(7):4089-95.
2. Understanding the antagonism of retinoblastoma protein dephosphorylation by PNUTS provides insights into the PP1 regulatory code. Choy MS, etal., Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4097-102. doi: 10.1073/pnas.1317395111. Epub 2014 Mar 3.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12574161   PMID:15060004   PMID:20516061   PMID:22681889   PMID:23426265   PMID:24270157  


Genomics

Comparative Map Data
Ppp1r10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,827,802 - 2,842,418 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl202,827,802 - 2,842,418 (-)EnsemblGRCr8
mRatBN7.2202,822,995 - 2,838,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,822,995 - 2,837,611 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx202,874,774 - 2,889,396 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,879,744 - 2,894,366 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,905,740 - 2,920,511 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,329,677 - 3,344,286 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,329,677 - 3,344,286 (-)Ensemblrn6Rnor6.0
Rnor_5.0205,427,600 - 5,441,809 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4202,940,605 - 2,984,636 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera20248,977 - 263,595 (-)NCBICelera
RGSC_v3.1202,970,906 - 2,984,624 (-)NCBI
Cytogenetic Map20p12NCBI
PPP1R10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,600,413 - 30,617,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,600,400 - 30,618,612 (-)Ensemblhg38GRCh38
GRCh37630,568,190 - 30,585,020 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,676,161 - 30,692,999 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34630,676,161 - 30,692,999NCBI
Celera632,166,300 - 32,183,138 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,368,345 - 30,385,252 (-)NCBIHuRef
CHM1_1630,570,286 - 30,587,193 (-)NCBICHM1_1
T2T-CHM13v2.0630,464,593 - 30,482,813 (-)NCBIT2T-CHM13v2.0
Ppp1r10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,227,404 - 36,243,175 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,227,326 - 36,243,175 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381735,916,512 - 35,932,283 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,916,434 - 35,932,283 (+)Ensemblmm10GRCm38
MGSCv371736,053,856 - 36,069,228 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361735,525,051 - 35,540,336 (+)NCBIMGSCv36mm8
Celera1739,426,148 - 39,441,526 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.77NCBI
Ppp1r10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583621,092 - 634,929 (-)Ensembl
ChiLan1.0NW_004955583621,380 - 635,595 (-)NCBIChiLan1.0ChiLan1.0
PPP1R10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,158,140 - 45,175,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,121,342 - 41,138,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,342,669 - 30,359,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,212,522 - 31,229,715 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,212,522 - 31,229,697 (-)EnsemblpanPan2panpan1.1
PPP1R10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112416,533 - 434,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12417,680 - 427,799 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha12554,183 - 572,419 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.012560,665 - 578,919 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12560,666 - 578,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112417,222 - 435,469 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012486,514 - 504,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012556,330 - 574,575 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppp1r10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,911,200 - 33,928,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837277,618 - 286,515 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936837276,423 - 296,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,148,834 - 23,166,209 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1723,148,834 - 23,166,933 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,818,442 - 26,836,606 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7p1.1NCBI
PPP1R10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,839,504 - 41,857,228 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,839,833 - 41,858,470 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604430,293,597 - 30,310,935 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,076,333 - 25,091,907 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475425,074,980 - 25,091,798 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp1r10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1189,126,461 - 9,141,516 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppp1r10
67 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:99
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000001053
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013629303Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
D20Yum34  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,807,242 - 2,807,408 (+)MAPPERmRatBN7.2
Rnor_6.0203,314,639 - 3,314,804NCBIRnor6.0
Rnor_5.0205,412,167 - 5,412,332UniSTSRnor5.0
RGSC_v3.4202,953,951 - 2,954,116UniSTSRGSC3.4
Celera20233,090 - 233,255UniSTS
Cytogenetic Map20p12UniSTS
C76158  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0203,340,329 - 3,340,424NCBIRnor6.0
Rnor_5.0205,437,708 - 5,437,803UniSTSRnor5.0
Celera20259,636 - 259,724UniSTS
Cytogenetic Map20p12UniSTS
RH128435  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0203,329,682 - 3,329,893NCBIRnor6.0
Celera20248,982 - 249,201UniSTS
RH 3.4 Map2015.8UniSTS
Cytogenetic Map20p12UniSTS
RH128459  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,815,085 - 2,815,274 (+)MAPPERmRatBN7.2
Rnor_6.0203,322,481 - 3,322,669NCBIRnor6.0
Rnor_5.0205,420,009 - 5,420,197UniSTSRnor5.0
RGSC_v3.4202,961,792 - 2,961,981UniSTSRGSC3.4
Celera20240,932 - 241,120UniSTS
Cytogenetic Map20p12UniSTS
D17Ertd808e  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0203,329,697 - 3,329,938NCBIRnor6.0
Celera20248,997 - 249,243UniSTS
Cytogenetic Map20p12UniSTS
RH137376  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,799,851 - 2,800,001 (+)MAPPERmRatBN7.2
Rnor_6.0203,307,249 - 3,307,398NCBIRnor6.0
Rnor_5.0205,404,777 - 5,404,926UniSTSRnor5.0
RGSC_v3.4202,946,273 - 2,946,422UniSTSRGSC3.4
Celera20225,700 - 225,849UniSTS
Cytogenetic Map20p12UniSTS
RH140082  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,810,160 - 2,810,370 (+)MAPPERmRatBN7.2
Rnor_6.0203,317,557 - 3,317,766NCBIRnor6.0
Rnor_5.0205,415,085 - 5,415,294UniSTSRnor5.0
RGSC_v3.4202,956,869 - 2,957,078UniSTSRGSC3.4
Celera20236,008 - 236,217UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000088836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,822,995 - 2,837,611 (-)Ensembl
Rnor_6.0 Ensembl203,329,690 - 3,344,279 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091505   ⟹   ENSRNOP00000072634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl202,822,995 - 2,837,611 (-)Ensembl
Rnor_6.0 Ensembl203,329,677 - 3,344,286 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120551   ⟹   ENSRNOP00000098193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl202,827,802 - 2,842,418 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120552   ⟹   ENSRNOP00000098194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl202,827,802 - 2,842,418 (-)Ensembl
RefSeq Acc Id: NM_022951   ⟹   NP_075240
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,827,802 - 2,842,418 (-)NCBI
mRatBN7.2202,822,995 - 2,837,611 (-)NCBI
Rnor_6.0203,329,677 - 3,344,286 (-)NCBI
Rnor_5.0205,427,600 - 5,441,809 (-)NCBI
RGSC_v3.4202,940,605 - 2,984,636 (-)RGD
Celera20248,977 - 263,595 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099055   ⟹   XP_038954983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8202,827,802 - 2,839,917 (-)NCBI
mRatBN7.2202,822,995 - 2,834,960 (-)NCBI
Protein Sequences
Protein RefSeqs NP_075240 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954983 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB96775 (Get FASTA)   NCBI Sequence Viewer  
  AAI34806 (Get FASTA)   NCBI Sequence Viewer  
  CAE84038 (Get FASTA)   NCBI Sequence Viewer  
  EDL86722 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000082809.1
  ENSRNOP00000098194
GenBank Protein O55000 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_075240   ⟸   NM_022951
- UniProtKB: Q6MG09 (UniProtKB/Swiss-Prot),   O55000 (UniProtKB/Swiss-Prot),   A4QN30 (UniProtKB/TrEMBL),   A0A0G2K3G9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072634   ⟸   ENSRNOT00000091505
RefSeq Acc Id: XP_038954983   ⟸   XM_039099055
- Peptide Label: isoform X1
- UniProtKB: O55000 (UniProtKB/Swiss-Prot),   Q6MG09 (UniProtKB/Swiss-Prot),   A4QN30 (UniProtKB/TrEMBL),   A0A0G2K3G9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000098193   ⟸   ENSRNOT00000120551
Ensembl Acc Id: ENSRNOP00000098194   ⟸   ENSRNOT00000120552
Protein Domains
C3H1-type   TFIIS N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O55000-F1-model_v2 AlphaFold O55000 1-872 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701297
Promoter ID:EPDNEW_R11817
Type:single initiation site
Name:Ppp1r10_1
Description:protein phosphatase 1, regulatory subunit 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0203,344,279 - 3,344,339EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620079 AgrOrtholog
BioCyc Gene G2FUF-4787 BioCyc
Ensembl Genes ENSRNOG00000059268 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000088836.3 UniProtKB/Swiss-Prot
  ENSRNOT00000120552 ENTREZGENE
Gene3D-CATH 1.20.930.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8362313 IMAGE-MGC_LOAD
InterPro TFIIS/CRSP70_N_sub UniProtKB/Swiss-Prot
  TFIIS/LEDGF_dom_sf UniProtKB/Swiss-Prot
  TFIIS_N UniProtKB/Swiss-Prot
  Znf_CCCH UniProtKB/Swiss-Prot
  Znf_CCCH_sf UniProtKB/Swiss-Prot
KEGG Report rno:65045 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156638 IMAGE-MGC_LOAD
NCBI Gene 65045 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 UniProtKB/Swiss-Prot
  SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED UniProtKB/Swiss-Prot
Pfam Med26 UniProtKB/Swiss-Prot
  zf-CCCH UniProtKB/Swiss-Prot
PhenoGen Ppp1r10 PhenoGen
PROSITE TFIIS_N UniProtKB/Swiss-Prot
  ZF_C3H1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000059268 RatGTEx
SMART TFS2N UniProtKB/Swiss-Prot
  ZnF_C3H1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47676 UniProtKB/Swiss-Prot
  SSF90229 UniProtKB/Swiss-Prot
UniProt A0A0G2K3G9 ENTREZGENE
  A0ABK0L786_RAT UniProtKB/TrEMBL
  A4QN30 ENTREZGENE, UniProtKB/TrEMBL
  O55000 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6MG09 ENTREZGENE
UniProt Secondary Q6MG09 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Ppp1r10  protein phosphatase 1, regulatory subunit 10    putative protein phosphatase 1 nuclear targeting subunit  Name updated 1299863 APPROVED
2002-08-07 Ppp1r10  putative protein phosphatase 1 nuclear targeting subunit      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization subcompartmentalized within the nucleus; colocalized with chromatin 633715
gene_domains contains SH3 binding domains, NTP binding P-loop, and RNA-binding protein RGG boxes 633715
gene_expression expressed in all tissues, highly enriched in testis 633715
gene_function binds to and inhibits activity of protein phosphatase 1 (PP1) 633715
gene_mapping found in the major histocompatibility RT1 complex 1300431