Kidins220 (kinase D-interacting substrate 220) - Rat Genome Database

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Gene: Kidins220 (kinase D-interacting substrate 220) Rattus norvegicus
Analyze
Symbol: Kidins220
Name: kinase D-interacting substrate 220
RGD ID: 619949
Description: Enables PDZ domain binding activity; protein kinase binding activity; and protein kinase regulator activity. Involved in nerve growth factor signaling pathway and positive regulation of neuron projection development. Located in late endosome. Part of protein-containing complex. Is active in glutamatergic synapse and postsynapse. Orthologous to human KIDINS220 (kinase D interacting substrate 220); PARTICIPATES IN neurotrophic factor signaling pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ankyrin repeat-rich membrane spanning protein; ankyrin repeat-rich membrane-spanning protein; ARMS; kinase D-interacting substance 220; kinase D-interacting substance of 220 kDa; kinase D-interacting substrate of 220 kDa
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8647,346,790 - 47,435,599 (+)NCBIGRCr8
mRatBN7.2641,618,207 - 41,706,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,932,999 - 42,017,887 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0642,247,812 - 42,332,699 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,680,938 - 41,765,818 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0644,225,142 - 44,322,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl644,225,233 - 44,322,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,955,540 - 53,048,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,649,878 - 42,740,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1642,653,003 - 42,743,283 (+)NCBI
Celera640,897,624 - 40,982,023 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification of a switch in neurotrophin signaling by selective tyrosine phosphorylation. Arevalo JC, etal., J Biol Chem. 2006 Jan 13;281(2):1001-7. Epub 2005 Nov 11.
2. The ARMS/Kidins220 scaffold protein modulates synaptic transmission. Arévalo JC, etal., Mol Cell Neurosci. 2010 Oct;45(2):92-100. doi: 10.1016/j.mcn.2010.06.002. Epub 2010 Jun 12.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rap1-PDZ-GEF1 interacts with a neurotrophin receptor at late endosomes, leading to sustained activation of Rap1 and ERK and neurite outgrowth. Hisata S, etal., J Cell Biol. 2007 Aug 27;178(5):843-60.
5. Identification and cloning of Kidins220, a novel neuronal substrate of protein kinase D. Iglesias T, etal., J Biol Chem 2000 Dec 22;275(51):40048-56.
6. An evolutionarily conserved transmembrane protein that is a novel downstream target of neurotrophin and ephrin receptors. Kong H, etal., J Neurosci 2001 Jan 1;21(1):176-85.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15096499   PMID:15167895   PMID:15939763   PMID:17079733   PMID:19449316   PMID:19759287   PMID:19946888   PMID:20519585   PMID:20680483   PMID:20936698   PMID:20943655   PMID:21381019  
PMID:22609016   PMID:26083449   PMID:26966186   PMID:27005418   PMID:31296845  


Genomics

Comparative Map Data
Kidins220
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8647,346,790 - 47,435,599 (+)NCBIGRCr8
mRatBN7.2641,618,207 - 41,706,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,932,999 - 42,017,887 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0642,247,812 - 42,332,699 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,680,938 - 41,765,818 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0644,225,142 - 44,322,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl644,225,233 - 44,322,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,955,540 - 53,048,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,649,878 - 42,740,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1642,653,003 - 42,743,283 (+)NCBI
Celera640,897,624 - 40,982,023 (+)NCBICelera
Cytogenetic Map6q16NCBI
KIDINS220
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3828,721,081 - 8,837,613 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl28,721,081 - 8,837,630 (-)EnsemblGRCh38hg38GRCh38
GRCh3728,861,211 - 8,977,743 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3628,786,511 - 8,895,181 (-)NCBINCBI36Build 36hg18NCBI36
Build 3428,819,657 - 8,928,328NCBI
Celera28,783,597 - 8,892,394 (-)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef28,715,174 - 8,823,911 (-)NCBIHuRef
CHM1_128,798,365 - 8,907,169 (-)NCBICHM1_1
T2T-CHM13v2.028,744,827 - 8,861,364 (-)NCBIT2T-CHM13v2.0
Kidins220
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391225,024,909 - 25,113,151 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1225,024,924 - 25,113,151 (+)EnsemblGRCm39 Ensembl
GRCm381224,974,903 - 25,063,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,974,925 - 25,063,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv371225,659,797 - 25,744,562 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361225,564,008 - 25,651,393 (+)NCBIMGSCv36mm8
MGSCv361219,042,902 - 19,131,600 (+)NCBIMGSCv36mm8
Celera1226,429,007 - 26,513,715 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.54NCBI
Kidins220
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955487782,683 - 862,079 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955487782,683 - 862,079 (+)NCBIChiLan1.0ChiLan1.0
KIDINS220
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212117,679,385 - 117,795,150 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A117,683,363 - 117,799,123 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A8,720,780 - 8,837,136 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A8,894,686 - 9,003,320 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A8,892,960 - 8,992,777 (-)Ensemblpanpan1.1panPan2
KIDINS220
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,983,208 - 6,077,609 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,982,938 - 6,071,165 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha175,902,344 - 6,006,463 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0176,084,932 - 6,177,119 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,081,864 - 6,177,102 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,965,863 - 6,069,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0175,967,448 - 6,071,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0175,981,580 - 6,085,696 (-)NCBIUU_Cfam_GSD_1.0
Kidins220
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629250,502,754 - 50,613,111 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365325,272,149 - 5,362,814 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365325,270,338 - 5,368,160 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIDINS220
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3127,382,611 - 127,474,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13127,382,587 - 127,477,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23135,751,131 - 135,775,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIDINS220
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11498,806,935 - 98,920,706 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1498,806,939 - 98,915,437 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604513,406,684 - 13,523,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kidins220
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248462,190,468 - 2,265,068 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248462,184,306 - 2,267,021 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kidins220
382 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:754
Count of miRNA genes:274
Interacting mature miRNAs:345
Transcripts:ENSRNOT00000005858, ENSRNOT00000066593
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

Markers in Region
D6Rat32  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,649,726 - 41,649,891 (+)MAPPERmRatBN7.2
Rnor_6.0644,256,005 - 44,256,169NCBIRnor6.0
Rnor_5.0652,983,512 - 52,983,676UniSTSRnor5.0
RGSC_v3.4642,685,660 - 42,685,825RGDRGSC3.4
RGSC_v3.4642,685,661 - 42,685,825UniSTSRGSC3.4
RGSC_v3.1642,688,787 - 42,688,951RGD
Celera640,928,921 - 40,929,085UniSTS
RH 3.4 Map6232.0RGD
RH 3.4 Map6232.0UniSTS
RH 2.0 Map6383.8RGD
SHRSP x BN Map633.0298RGD
Cytogenetic Map6q16UniSTS
RH131522  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,702,886 - 41,703,074 (+)MAPPERmRatBN7.2
Rnor_6.0644,322,569 - 44,322,756NCBIRnor6.0
Rnor_5.0653,047,885 - 53,048,072UniSTSRnor5.0
RGSC_v3.4642,739,788 - 42,739,975UniSTSRGSC3.4
Celera640,981,654 - 40,981,841UniSTS
RH 3.4 Map6237.0UniSTS
Cytogenetic Map6q16UniSTS
AW528400  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,628,345 - 41,628,547 (+)MAPPERmRatBN7.2
Rnor_6.0644,235,285 - 44,235,486NCBIRnor6.0
Rnor_5.0652,965,677 - 52,965,878UniSTSRnor5.0
RGSC_v3.4642,661,447 - 42,661,648UniSTSRGSC3.4
Celera640,907,669 - 40,907,870UniSTS
RH 3.4 Map6231.8UniSTS
Cytogenetic Map6q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 52 36 19 36 8 9 74 35 38 11 8
Low 1 5 5 5 2 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF239045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF313464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005858   ⟹   ENSRNOP00000005858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
Rnor_6.0 Ensembl644,230,985 - 44,321,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066593   ⟹   ENSRNOP00000063889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
Rnor_6.0 Ensembl644,225,233 - 44,322,938 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098052   ⟹   ENSRNOP00000085209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099008   ⟹   ENSRNOP00000091847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099104   ⟹   ENSRNOP00000082934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106831   ⟹   ENSRNOP00000093485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119137   ⟹   ENSRNOP00000092341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: NM_053795   ⟹   NP_446247
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,907 - 47,431,865 (+)NCBI
mRatBN7.2641,618,294 - 41,703,256 (+)NCBI
Rnor_6.0644,225,233 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
RGSC_v3.4642,649,878 - 42,740,157 (+)RGD
Celera640,897,624 - 40,982,023 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239925   ⟹   XP_006239987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239927   ⟹   XP_006239989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,208 - 41,703,256 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239928   ⟹   XP_006239990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,294 - 41,701,521 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239937   ⟹   XP_006239999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,208 - 41,701,521 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593979   ⟹   XP_017449468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,294 - 41,703,193 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593980   ⟹   XP_017449469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,294 - 41,703,193 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593983   ⟹   XP_017449472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,790 - 47,431,796 (+)NCBI
mRatBN7.2641,618,294 - 41,703,193 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111617   ⟹   XP_038967545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
mRatBN7.2641,618,208 - 41,701,521 (+)NCBI
RefSeq Acc Id: XM_039111622   ⟹   XP_038967550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
mRatBN7.2641,618,207 - 41,706,990 (+)NCBI
RefSeq Acc Id: XM_039111623   ⟹   XP_038967551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
mRatBN7.2641,618,207 - 41,706,990 (+)NCBI
RefSeq Acc Id: XM_063261399   ⟹   XP_063117469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261400   ⟹   XP_063117470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261401   ⟹   XP_063117471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261402   ⟹   XP_063117472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261403   ⟹   XP_063117473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261404   ⟹   XP_063117474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261405   ⟹   XP_063117475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261406   ⟹   XP_063117476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261407   ⟹   XP_063117477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261408   ⟹   XP_063117478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,431,796 (+)NCBI
RefSeq Acc Id: XM_063261409   ⟹   XP_063117479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261410   ⟹   XP_063117480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261411   ⟹   XP_063117481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261412   ⟹   XP_063117482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261413   ⟹   XP_063117483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261414   ⟹   XP_063117484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261415   ⟹   XP_063117485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261416   ⟹   XP_063117486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261417   ⟹   XP_063117487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261418   ⟹   XP_063117488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261419   ⟹   XP_063117489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261420   ⟹   XP_063117490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261421   ⟹   XP_063117491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261422   ⟹   XP_063117492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,359,686 - 47,435,599 (+)NCBI
RefSeq Acc Id: XM_063261423   ⟹   XP_063117493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8647,346,812 - 47,435,599 (+)NCBI
Protein Sequences
Protein RefSeqs NP_446247 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239987 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239989 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239990 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239999 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449468 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449469 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449472 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967545 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967550 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967551 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117469 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117470 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117471 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117474 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117476 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117477 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117478 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117479 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117480 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117481 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117482 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117483 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117484 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117485 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117486 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117487 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117488 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117489 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117490 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117491 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117492 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117493 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG34167 (Get FASTA)   NCBI Sequence Viewer  
  AAG35185 (Get FASTA)   NCBI Sequence Viewer  
  AKP95858 (Get FASTA)   NCBI Sequence Viewer  
  AKP95859 (Get FASTA)   NCBI Sequence Viewer  
  AKP95860 (Get FASTA)   NCBI Sequence Viewer  
  AKP95861 (Get FASTA)   NCBI Sequence Viewer  
  AKP95862 (Get FASTA)   NCBI Sequence Viewer  
  AKP95863 (Get FASTA)   NCBI Sequence Viewer  
  EDM03192 (Get FASTA)   NCBI Sequence Viewer  
  EDM03193 (Get FASTA)   NCBI Sequence Viewer  
  EDM03194 (Get FASTA)   NCBI Sequence Viewer  
  EDM03195 (Get FASTA)   NCBI Sequence Viewer  
  EDM03196 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005858
  ENSRNOP00000005858.7
  ENSRNOP00000063889
  ENSRNOP00000063889.3
  ENSRNOP00000082934
  ENSRNOP00000082934.1
  ENSRNOP00000085209
  ENSRNOP00000085209.1
  ENSRNOP00000091847
  ENSRNOP00000091847.1
  ENSRNOP00000092341
  ENSRNOP00000092341.1
  ENSRNOP00000093485
  ENSRNOP00000093485.1
GenBank Protein Q9EQG6 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_446247   ⟸   NM_053795
- Sequence:
RefSeq Acc Id: XP_006239987   ⟸   XM_006239925
- Peptide Label: isoform X1
- UniProtKB: A6HAY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239999   ⟸   XM_006239937
- Peptide Label: isoform X17
- UniProtKB: D4ABK9 (UniProtKB/TrEMBL),   A6HAY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239989   ⟸   XM_006239927
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006239990   ⟸   XM_006239928
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AFW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449468   ⟸   XM_017593979
- Peptide Label: isoform X10
- UniProtKB: D3ZWB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449469   ⟸   XM_017593980
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017449472   ⟸   XM_017593983
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: ENSRNOP00000063889   ⟸   ENSRNOT00000066593
RefSeq Acc Id: ENSRNOP00000005858   ⟸   ENSRNOT00000005858
RefSeq Acc Id: XP_038967550   ⟸   XM_039111622
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038967551   ⟸   XM_039111623
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038967545   ⟸   XM_039111617
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AHD1 (UniProtKB/TrEMBL),   A6HAY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082934   ⟸   ENSRNOT00000099104
RefSeq Acc Id: ENSRNOP00000085209   ⟸   ENSRNOT00000098052
RefSeq Acc Id: ENSRNOP00000091847   ⟸   ENSRNOT00000099008
RefSeq Acc Id: ENSRNOP00000093485   ⟸   ENSRNOT00000106831
RefSeq Acc Id: ENSRNOP00000092341   ⟸   ENSRNOT00000119137
RefSeq Acc Id: XP_063117481   ⟸   XM_063261411
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063117484   ⟸   XM_063261414
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063117487   ⟸   XM_063261417
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063117491   ⟸   XM_063261421
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063117489   ⟸   XM_063261419
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063117493   ⟸   XM_063261423
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063117469   ⟸   XM_063261399
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117474   ⟸   XM_063261404
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063117475   ⟸   XM_063261405
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063117478   ⟸   XM_063261408
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063117479   ⟸   XM_063261409
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063117482   ⟸   XM_063261412
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063117480   ⟸   XM_063261410
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063117483   ⟸   XM_063261413
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063117486   ⟸   XM_063261416
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063117485   ⟸   XM_063261415
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063117490   ⟸   XM_063261420
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063117488   ⟸   XM_063261418
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063117492   ⟸   XM_063261422
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063117470   ⟸   XM_063261400
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063117471   ⟸   XM_063261401
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063117472   ⟸   XM_063261402
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117473   ⟸   XM_063261403
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063117476   ⟸   XM_063261406
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063117477   ⟸   XM_063261407
- Peptide Label: isoform X15
Protein Domains
KAP NTPase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQG6-F1-model_v2 AlphaFold Q9EQG6 1-1762 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694525
Promoter ID:EPDNEW_R5048
Type:multiple initiation site
Name:Kidins220_1
Description:kinase D-interacting substrate 220
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0644,225,156 - 44,225,216EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619949 AgrOrtholog
BioCyc Gene G2FUF-38018 BioCyc
Ensembl Genes ENSRNOG00000023176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005858.7 UniProtKB/TrEMBL
  ENSRNOT00000066593.5 UniProtKB/TrEMBL
  ENSRNOT00000098052.1 UniProtKB/TrEMBL
  ENSRNOT00000099008.1 UniProtKB/TrEMBL
  ENSRNOT00000099104 ENTREZGENE
  ENSRNOT00000099104.1 UniProtKB/TrEMBL
  ENSRNOT00000106831.1 UniProtKB/TrEMBL
  ENSRNOT00000119137.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP_P-loop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116478 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 116478 ENTREZGENE
PANTHER KINASE D-INTERACTING SUBSTRATE OF 220 KDA UniProtKB/Swiss-Prot
  KINASE D-INTERACTING SUBSTRATE OF 220 KDA UniProtKB/Swiss-Prot
  KINASE D-INTERACTING SUBSTRATE OF 220 KDA UniProtKB/TrEMBL
  KINASE D-INTERACTING SUBSTRATE OF 220 KDA UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kidins220 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023176 RatGTEx
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H4SMZ8_RAT UniProtKB/TrEMBL
  A0A0H4SN51_RAT UniProtKB/TrEMBL
  A0A0H4SQ65_RAT UniProtKB/TrEMBL
  A0A0H4SRI2_RAT UniProtKB/TrEMBL
  A0A0H4SRI7_RAT UniProtKB/TrEMBL
  A0A0H4T4D0_RAT UniProtKB/TrEMBL
  A0A8I6AFW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGC2_RAT UniProtKB/TrEMBL
  A0A8I6AHD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G836_RAT UniProtKB/TrEMBL
  A6HAY7 ENTREZGENE, UniProtKB/TrEMBL
  A6HAY8 ENTREZGENE, UniProtKB/TrEMBL
  A6HAY9_RAT UniProtKB/TrEMBL
  A6HAZ0_RAT UniProtKB/TrEMBL
  A6HAZ1_RAT UniProtKB/TrEMBL
  D3ZWB2 ENTREZGENE, UniProtKB/TrEMBL
  D4ABK9 ENTREZGENE, UniProtKB/TrEMBL
  KDIS_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9ERD4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-02-04 Kidins220  kinase D-interacting substrate 220  Kidins220  kinase D-interacting substrate of 220 kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-09-11 Ube1x  kinase D-interacting substrate of 220 kDa  Kidins220  kinase D-interacting substance 220  Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-20 Kidins220  kinase D-interacting substance 220    kinase D-interacting substance of 220 kDa  Name updated 1299863 APPROVED
2002-08-07 Kidins220  kinase D-interacting substance of 220 kDa      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains 11 ankyrin repeats and four transmembrane domains 633109
gene_expression expressed in brain and neuroendocrine cells 633109