Dlk1 (delta like non-canonical Notch ligand 1) - Rat Genome Database

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Gene: Dlk1 (delta like non-canonical Notch ligand 1) Rattus norvegicus
Analyze
Symbol: Dlk1
Name: delta like non-canonical Notch ligand 1
RGD ID: 619931
Description: Predicted to enable calcium ion binding activity. Involved in cell differentiation. Predicted to be located in external side of plasma membrane and extracellular space. Predicted to be active in membrane. Orthologous to human DLK1 (delta like non-canonical Notch ligand 1); PARTICIPATES IN forkhead class A signaling pathway; Notch signaling pathway; p38 MAPK signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: delta-like 1; delta-like 1 homolog; delta-like 1 homolog (Drosophila); delta-like homolog (Drosophila); DLK-1; preadipocyte factor 1; preadipocyte factor-1; Pref-1; protein delta homolog 1; Zog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,192,491 - 134,199,779 (+)NCBIGRCr8
mRatBN7.26128,410,216 - 128,417,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6128,410,316 - 128,417,522 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6128,550,763 - 128,557,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,846,606 - 128,853,806 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,207,854 - 128,215,027 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06133,576,513 - 133,583,751 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6133,552,821 - 133,583,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06142,742,149 - 142,749,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46134,022,016 - 134,043,058 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16134,028,202 - 134,035,262 (+)NCBI
Celera6125,960,411 - 125,967,475 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dlk1Ratbiliary atresia  ISODLK1 (Homo sapiens)1625622 RGD 
Dlk1RatExperimental Autoimmune Encephalomyelitis  ISODlk1 (Mus musculus)150520045 RGD 
Dlk1Rathepatocellular carcinoma  ISODlk1 (Mus musculus)11344640mRNA:increased expression:liver (mouse)RGD 
Dlk1Rathigh grade glioma  ISODLK1 (Homo sapiens)1625600 RGD 
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Dlk1Ratcentral precocious puberty  ISODLK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Central precocious pubertyClinVar 
Dlk1Ratgenetic disease  ISODLK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
Dlk1RatKagami-Ogata syndrome  ISODLK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Paternal uniparental disomy 14ClinVarPMID:18176563
Dlk1RatSilver-Russell Syndrome 1  ISODLK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Silver-Russell syndrome 1ClinVar 
Object Symbol
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Reference
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Original Reference(s)
Dlk1RatFetal Growth Retardation  ISODLK1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27776119
Dlk1Ratmyelodysplastic syndrome  ISODLK1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18575777

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Object Symbol
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Original Reference(s)
Dlk1Rat1,2-dimethylhydrazine increases expressionISODlk1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of DLK1 mRNACTDPMID:22206623
Dlk1Rat1,4-bis(2-ethylhexyl) sulfosuccinate decreases expressionISODlk1 (Mus musculus)6480464Dioctyl Sulfosuccinic Acid results in decreased expression of DLK1 mRNACTDPMID:26135921
Dlk1Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of DLK1 mRNACTDPMID:17557909
Dlk1Rat17beta-estradiol decreases expressionISODLK1 (Homo sapiens)6480464Estradiol results in decreased expression of DLK1 mRNACTDPMID:23094148
Dlk1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of DLK1 mRNACTDPMID:32145629
Dlk1Rat17beta-estradiol multiple interactionsISODLK1 (Homo sapiens)6480464IGF1R mutant form inhibits the reaction [Estradiol results in decreased expression of DLK1 mRNA]CTDPMID:23094148
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISODlk1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of DLK1 mRNACTDPMID:19933214
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of DLK1 mRNACTDPMID:34747641
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DLK1 mRNACTDPMID:32109520
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine affects methylationISODLK1 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the methylation of DLK1 5' UTR and Tetrachlorodibenzodioxin affects the methylation of DLK1 exonCTDPMID:28011154
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISODlk1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DLK1 mRNACTDPMID:26377647
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISODlk1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Carbon Tetrachloride] results in increased expression of DLK1 mRNACTDPMID:27693115
Dlk1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISODLK1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of DLK1 mRNACTDPMID:20106945 and PMID:21632981
Dlk1Rat2-acetamidofluorene increases expressionEXP 64804642-Acetylaminofluorene results in increased expression of DLK1 mRNA and 2-Acetylaminofluorene results in increased expression of DLK1 proteinCTDPMID:15567716 more ...
Dlk1Rat2-amino-2-deoxy-D-glucopyranose 6-phosphate decreases expressionISODlk1 (Mus musculus)6480464glucosamine 6-phosphate results in decreased expression of DLK1 mRNACTDPMID:19427183
Dlk1Rat2-methylcholine affects expressionISODLK1 (Homo sapiens)6480464beta-methylcholine affects the expression of DLK1 mRNACTDPMID:21179406
Dlk1Rat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:23196670
Dlk1Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISODlk1 (Mus musculus)6480464tetrabromobisphenol A results in decreased expression of DLK1 mRNACTDPMID:30496566
Dlk1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISODlk1 (Mus musculus)6480464[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS1 protein] results in decreased expression of DLK1 mRNA and silybin inhibits the reaction [[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS1 protein] results in decreased expression of DLK1 mRNA]CTDPMID:25559859
Dlk1Rat4,4'-sulfonyldiphenol increases expressionISODlk1 (Mus musculus)6480464bisphenol S results in increased expression of DLK1 mRNACTDPMID:30951980

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Biological Process
1 to 16 of 16 rows

  
Object Symbol
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Original Reference(s)
Dlk1Ratbone mineralization acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291MGI:3526402 PMID:21308776RGDPMID:21308776
Dlk1Ratcell differentiation  IDA 632565 RGD 
Dlk1Ratembryonic skeletal system development acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291 PMID:19247431RGDPMID:19247431
Dlk1Ratmulticellular organism growth acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291MGI:3526402 PMID:21308776RGDPMID:21308776
Dlk1Ratnegative regulation of fat cell differentiation involved_inISODlk1 (Mus musculus)1624291 PMID:8500166RGDPMID:8500166
Dlk1Ratnegative regulation of Notch signaling pathway involved_inISODLK1 (Homo sapiens)1624291 PMID:25093684RGDPMID:25093684
Dlk1Ratnegative regulation of Notch signaling pathway acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291MGI:97363 PMID:21419176RGDPMID:21419176
Dlk1Ratnegative regulation of Notch signaling pathway involved_inIBAMGI:94900 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dlk1Ratnegative regulation of Notch signaling pathway involved_inIEAUniProtKB:P80370 and ensembl:ENSP000003402921600115GO_REF:0000107EnsemblGO_REF:0000107
Dlk1Ratnegative regulation of vascular endothelial cell proliferation involved_inISODlk1 (Mus musculus)1624291 PMID:24584117RGDPMID:24584117
Dlk1Ratossification acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291MGI:3526402 PMID:21308776RGDPMID:21308776
Dlk1Ratosteoblast differentiation acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291MGI:3526402 PMID:21308776RGDPMID:21308776
Dlk1Ratpositive regulation of bone resorption acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291MGI:3526402 PMID:21308776RGDPMID:21308776
Dlk1Ratpositive regulation of cytokine production acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291 PMID:21308776RGDPMID:21308776
Dlk1Ratpost-embryonic development acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291 PMID:19247431RGDPMID:19247431
Dlk1Ratregulation of gene expression acts_upstream_of_or_withinISODlk1 (Mus musculus)1624291 PMID:19515692RGDPMID:19515692
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Cellular Component

  
Object Symbol
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Reference
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Original Reference(s)
Dlk1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Dlk1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Dlk1Ratexternal side of plasma membrane located_inISODlk1 (Mus musculus)1624291 PMID:18988804RGDPMID:18988804
Dlk1Ratextracellular space located_inISODLK1 (Homo sapiens)1624291 PMID:25093684 and PMID:7925474RGDPMID:25093684 and PMID:7925474
Dlk1Ratextracellular space located_inIEAUniProtKB:P80370 and ensembl:ENSP000003402921600115GO_REF:0000107EnsemblGO_REF:0000107
Dlk1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Dlk1Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Dlk1Ratmembrane is_active_inIBAMGI:1920432 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
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Original Reference(s)
Dlk1Ratcalcium ion binding enablesIEAInterPro:IPR0018811600115GO_REF:0000002InterProGO_REF:0000002
Dlk1Ratprotein binding enablesISODLK1 (Homo sapiens)1624291UniProtKB:P28799-2 more ...RGDPMID:32814053
Dlk1Ratprotein binding enablesISODlk1 (Mus musculus)1624291PR:Q6PHU5 PMID:24928897RGDPMID:24928897
Dlk1Ratprotein binding enablesIPIUniProtKB:Q498M513673844PMID:22128169UniProt 

RGD Manual Annotations


  
Object Symbol
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Original Reference(s)
Dlk1Ratp38 MAPK signaling pathway   ISODLK1 (Homo sapiens)7240533 RGD 

Imported Annotations - PID (archival)

Object Symbol
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Qualifier
Evidence
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Reference
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Source
Original Reference(s)
Dlk1Ratforkhead class A signaling pathway  ISODLK1 (Homo sapiens)6484113 PIDPID:200087
Dlk1RatNotch signaling pathway   ISODLK1 (Homo sapiens)6484113 PIDPID:200015

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Reference Title
Reference Citation
1. Growth hormone and prolactin stimulate the expression of rat preadipocyte factor-1/delta-like protein in pancreatic islets: molecular cloning and expression pattern during development and growth of the endocrine pancreas. Carlsson C, etal., Endocrinology 1997 Sep;138(9):3940-8.
2. Mechanisms and functions of p38 MAPK signalling. Cuadrado A and Nebreda AR, Biochem J. 2010 Aug 1;429(3):403-17. doi: 10.1042/BJ20100323.
3. Hepatocyte-Specific Arid1a Deficiency Initiates Mouse Steatohepatitis and Hepatocellular Carcinoma. Fang JZ, etal., PLoS One. 2015 Nov 16;10(11):e0143042. doi: 10.1371/journal.pone.0143042. eCollection 2015.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Cloning of a membrane-spanning protein with epidermal growth factor-like repeat motifs from adrenal glomerulosa cells. Halder SK, etal., Endocrinology 1998 Jul;139(7):3316-28.
7. The human Delta-like 1 homologue is implicated in the progression of liver fibrosis in biliary atresia. Huang CC, etal., J Pathol. 2004 Feb;202(2):172-9.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Comprehensive gene review and curation RGD comprehensive gene curation
15. Parent-of-origin effects implicate epigenetic regulation of experimental autoimmune encephalomyelitis and identify imprinted Dlk1 as a novel risk gene. Stridh P, etal., PLoS Genet. 2014 Mar 27;10(3):e1004265. doi: 10.1371/journal.pgen.1004265. eCollection 2014 Mar.
16. Sh3rf2/POSHER protein promotes cell survival by ring-mediated proteasomal degradation of the c-Jun N-terminal kinase scaffold POSH (Plenty of SH3s) protein. Wilhelm M, etal., J Biol Chem. 2012 Jan 13;287(3):2247-56. doi: 10.1074/jbc.M111.269431. Epub 2011 Nov 28.
17. DLK1: increased expression in gliomas and associated with oncogenic activities. Yin D, etal., Oncogene. 2006 Mar 23;25(13):1852-61.
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PMID:7925474   PMID:8500166   PMID:12477932   PMID:12655782   PMID:18751720   PMID:18988804   PMID:19084046   PMID:19247431   PMID:19515692   PMID:19661059   PMID:21308776   PMID:21419176  
PMID:22298767   PMID:23387476   PMID:24584117   PMID:24913911   PMID:25093684   PMID:25268256   PMID:25342302   PMID:25723595   PMID:27044861   PMID:29453913   PMID:30145985   PMID:31091532  
PMID:33472171   PMID:35050550  



Dlk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,192,491 - 134,199,779 (+)NCBIGRCr8
mRatBN7.26128,410,216 - 128,417,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6128,410,316 - 128,417,522 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6128,550,763 - 128,557,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,846,606 - 128,853,806 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,207,854 - 128,215,027 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06133,576,513 - 133,583,751 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6133,552,821 - 133,583,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06142,742,149 - 142,749,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46134,022,016 - 134,043,058 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16134,028,202 - 134,035,262 (+)NCBI
Celera6125,960,411 - 125,967,475 (+)NCBICelera
Cytogenetic Map6q32NCBI
DLK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,726,892 - 100,738,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,725,705 - 100,738,224 (+)EnsemblGRCh38hg38GRCh38
GRCh3714101,193,229 - 101,204,561 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,263,006 - 100,271,213 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414100,263,005 - 100,271,210NCBI
Celera1481,247,286 - 81,255,551 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1481,373,717 - 81,381,968 (+)NCBIHuRef
CHM1_114101,130,974 - 101,139,248 (+)NCBICHM1_1
T2T-CHM13v2.01494,961,805 - 94,973,139 (+)NCBIT2T-CHM13v2.0
Dlk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,418,411 - 109,429,262 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12109,418,749 - 109,429,262 (+)EnsemblGRCm39 Ensembl
GRCm3812109,452,485 - 109,463,336 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,452,823 - 109,463,336 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,691,033 - 110,701,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,901,030 - 109,908,498 (+)NCBIMGSCv36mm8
Celera12110,648,411 - 110,658,915 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.17NCBI
Dlk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495562738,128 - 43,728 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495562737,886 - 43,730 (-)NCBIChiLan1.0ChiLan1.0
DLK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215101,879,300 - 101,887,554 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114101,095,796 - 101,104,047 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01481,348,380 - 81,356,607 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114100,654,965 - 100,668,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,654,965 - 100,668,019 (+)Ensemblpanpan1.1panPan2
DLK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,961,975 - 68,970,106 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,961,744 - 68,972,761 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,479,790 - 68,487,872 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0869,245,619 - 69,253,709 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl869,245,491 - 69,256,384 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,906,950 - 68,915,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,973,041 - 68,981,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,370,948 - 69,379,035 (+)NCBIUU_Cfam_GSD_1.0
Dlk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086405,567,786 - 5,578,803 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366044,504,503 - 4,511,910 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366044,504,519 - 4,511,897 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,565,854 - 121,576,654 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,565,844 - 121,577,493 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27132,339,547 - 132,345,907 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DLK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,687,542 - 78,695,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,687,668 - 78,695,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,824,853 - 65,833,295 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dlk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247343,363,001 - 3,372,694 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247343,363,084 - 3,372,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Dlk1
18 total Variants

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:59
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000006339
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat

1 to 10 of 27 rows
BE115497  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,417,114 - 128,417,264 (+)MAPPERmRatBN7.2
Rnor_6.06133,583,346 - 133,583,495NCBIRnor6.0
Rnor_5.06142,748,927 - 142,749,076UniSTSRnor5.0
RGSC_v3.46134,028,833 - 134,028,982UniSTSRGSC3.4
Celera6125,967,189 - 125,967,338UniSTS
RH 3.4 Map6791.5UniSTS
Cytogenetic Map6q32UniSTS
UniSTS:259449  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,416,706 - 128,417,270 (+)MAPPERmRatBN7.2
Rnor_6.06133,582,938 - 133,583,501NCBIRnor6.0
Rnor_5.06142,748,519 - 142,749,082UniSTSRnor5.0
RGSC_v3.46134,028,425 - 134,028,988UniSTSRGSC3.4
Celera6125,966,781 - 125,967,344UniSTS
Cytogenetic Map6q32UniSTS
Dlk1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,416,794 - 128,417,010 (+)MAPPERmRatBN7.2
Rnor_6.06133,583,026 - 133,583,241NCBIRnor6.0
Rnor_5.06142,748,607 - 142,748,822UniSTSRnor5.0
RGSC_v3.46134,028,513 - 134,028,728UniSTSRGSC3.4
Celera6125,966,869 - 125,967,084UniSTS
Cytogenetic Map6q32UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 48 113 85 84 53 24 53 6 204 95 93 39 60 31



Ensembl Acc Id: ENSRNOT00000006339   ⟹   ENSRNOP00000006339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6128,410,969 - 128,417,522 (+)Ensembl
Rnor_6.0 Ensembl6133,552,821 - 133,583,498 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085933   ⟹   ENSRNOP00000069391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6128,410,316 - 128,417,522 (+)Ensembl
Rnor_6.0 Ensembl6133,576,568 - 133,583,751 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107076   ⟹   ENSRNOP00000086145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6128,410,316 - 128,417,267 (+)Ensembl
RefSeq Acc Id: NM_053744   ⟹   NP_446196
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86134,192,597 - 134,199,779 (+)NCBI
mRatBN7.26128,410,335 - 128,417,518 (+)NCBI
Rnor_6.06133,576,568 - 133,583,751 (+)NCBI
Rnor_5.06142,742,149 - 142,749,166 (+)NCBI
RGSC_v3.46134,022,016 - 134,043,058 (+)RGD
Celera6125,960,411 - 125,967,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764917   ⟹   XP_008763139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86134,192,491 - 134,199,777 (+)NCBI
mRatBN7.26128,410,216 - 128,417,397 (+)NCBI
Rnor_6.06133,576,513 - 133,583,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063261397   ⟹   XP_063117467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86134,192,503 - 134,199,777 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_446196 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763139 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117467 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB87095 (Get FASTA)   NCBI Sequence Viewer  
  AAI67752 (Get FASTA)   NCBI Sequence Viewer  
  BAA25881 (Get FASTA)   NCBI Sequence Viewer  
  BAB12399 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006339
  ENSRNOP00000069391.1
  ENSRNOP00000086145
GenBank Protein O70534 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_446196   ⟸   NM_053744
- Peptide Label: precursor
- UniProtKB: Q62779 (UniProtKB/Swiss-Prot),   O70534 (UniProtKB/TrEMBL),   A6KBJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763139   ⟸   XM_008764917
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GDQ5 (UniProtKB/TrEMBL),   A6KBJ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006339   ⟸   ENSRNOT00000006339
Ensembl Acc Id: ENSRNOP00000069391   ⟸   ENSRNOT00000085933
Ensembl Acc Id: ENSRNOP00000086145   ⟸   ENSRNOT00000107076
EGF-like

Name Modeler Protein Id AA Range Protein Structure
AF-O70534-F1-model_v2 AlphaFold O70534 1-383 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694825
Promoter ID:EPDNEW_R5349
Type:single initiation site
Name:Dlk1_1
Description:delta like non-canonical Notch ligand 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06133,576,535 - 133,576,595EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-36264 BioCyc
Ensembl Genes ENSRNOG00000019584 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006339 ENTREZGENE
  ENSRNOT00000085933.2 UniProtKB/Swiss-Prot
  ENSRNOT00000107076 ENTREZGENE
Gene3D-CATH Laminin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8365650 IMAGE-MGC_LOAD
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_CS UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  Notch_Cell-Fate_Det UniProtKB/Swiss-Prot
KEGG Report rno:114587 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187346 IMAGE-MGC_LOAD
NCBI Gene 114587 ENTREZGENE
PANTHER CRUMBS FAMILY MEMBER UniProtKB/Swiss-Prot
  DELTA LIKE NON-CANONICAL NOTCH LIGAND 1 UniProtKB/Swiss-Prot
Pfam DL-JAG_EGF-like UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  hEGF UniProtKB/Swiss-Prot
PhenoGen Dlk1 PhenoGen
PRINTS EGFBLOOD UniProtKB/Swiss-Prot
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019584 RatGTEx
SMART EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
UniProt A0A8I6GDQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q3B5_RAT UniProtKB/TrEMBL
  A6KBJ4 ENTREZGENE, UniProtKB/TrEMBL
  DLK1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q62779 ENTREZGENE
UniProt Secondary Q62779 UniProtKB/Swiss-Prot
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-20 Dlk1  delta like non-canonical Notch ligand 1  Dlk1  delta-like 1 homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Dlk1  delta-like 1 homolog (Drosophila)    delta-like homolog (Drosophila)  Name updated 1299863 APPROVED
2002-08-07 Dlk1  delta-like homolog (Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_process involved in both differentiation and growth of beta-cells 632566