Tnfrsf11b (TNF receptor superfamily member 11B) - Rat Genome Database

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Gene: Tnfrsf11b (TNF receptor superfamily member 11B) Rattus norvegicus
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Symbol: Tnfrsf11b
Name: TNF receptor superfamily member 11B
RGD ID: 619802
Description: Predicted to enable heparan sulfate binding activity. Involved in several processes, including negative regulation of bone resorption; negative regulation of odontogenesis of dentin-containing tooth; and response to estrogen. Located in extracellular space. Biomarker of congestive heart failure; myocarditis; and periapical periodontitis. Human ortholog(s) of this gene implicated in Paget's disease of bone; Paget's disease of bone 5; and osteoarthritis. Orthologous to human TNFRSF11B (TNF receptor superfamily member 11b); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH (20S)-ginsenoside Rg3; (S)-nicotine; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC93568; Opg; Osteoprotegerin; tumor necrosis factor receptor superfamily member 11B; tumor necrosis factor receptor superfamily, member 11b; tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8787,456,318 - 87,484,324 (-)NCBIGRCr8
mRatBN7.2785,566,520 - 85,594,526 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl785,566,520 - 85,594,538 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx787,463,913 - 87,491,923 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0789,665,094 - 89,693,104 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0789,470,571 - 89,498,581 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0793,798,580 - 93,826,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl793,798,545 - 93,826,665 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0794,436,612 - 94,464,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4790,606,424 - 90,634,431 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1790,640,654 - 90,668,661 (-)NCBI
Celera782,388,596 - 82,416,602 (-)NCBICelera
Cytogenetic Map7q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Tnfrsf11bRatAlveolar Bone Loss treatmentIEP 329956421associated with periodontal diseaseRGD 
Tnfrsf11bRataortic valve stenosis  ISOTNFRSF11B (Homo sapiens)7205491protein:increased expression:serumRGD 
Tnfrsf11bRatbipolar disorder  ISOTNFRSF11B (Homo sapiens)7205488protein:increased expression:plasmaRGD 
Tnfrsf11bRatcarotid artery disease  ISOTNFRSF11B (Homo sapiens)1624168protein:increased expression:serumRGD 
Tnfrsf11bRatcarotid artery disease disease_progressionISOTNFRSF11B (Homo sapiens)9068941protein:increased expression:serumRGDPMID:15117849 and REF_RGD_ID:1624168
Tnfrsf11bRatcerebral infarction disease_progressionISOTNFRSF11B (Homo sapiens)7205492 RGD 
Tnfrsf11bRatCharcot-Marie-Tooth disease  ISOTNFRSF11B (Homo sapiens)7205513protein:increased expression:serumRGD 
Tnfrsf11bRatcongestive heart failure  IEP 1624176mRNA and protein:incereased expression:myocardiumRGD 
Tnfrsf11bRatCoronary Artery Calcification severityISOTNFRSF11B (Homo sapiens)7205482associated with Kidney Failure and ChronicRGD 
Tnfrsf11bRatcoronary artery disease  ISOTNFRSF11B (Homo sapiens)1620893protein:increased expression:serumRGD 
Tnfrsf11bRatcoronary stenosis  ISOTNFRSF11B (Homo sapiens)1624167protein:increased expression:serumRGD 
Tnfrsf11bRatDiabetic Nephropathies disease_progressionISOTNFRSF11B (Homo sapiens)7205493associated with Diabetes Mellitus and Type 1RGD 
Tnfrsf11bRatDiabetic Nephropathies treatmentISOTNFRSF11B (Homo sapiens)7205514associated with Diabetes Mellitus and Type 2RGD 
Tnfrsf11bRatend stage renal disease severityISOTNFRSF11B (Homo sapiens)7205485 RGD 
Tnfrsf11bRatExperimental Arthritis  IEP 1624171mRNA:decreased expression:boneRGD 
Tnfrsf11bRatExperimental Arthritis treatmentIEP 42721982Sinomenine CHEBI:9163RGD 
Tnfrsf11bRathereditary arterial and articular multiple calcification syndrome  ISOTNFRSF11B (Homo sapiens)7205494associated with Diabetes Mellitus more ...RGD 
Tnfrsf11bRathypertension severityISOTNFRSF11B (Homo sapiens)7205512protein:increased expression:serumRGD 
Tnfrsf11bRatInsulin Resistance  ISOTNFRSF11B (Homo sapiens)1620889associated with obesity and protein:increased expression:serumRGD 
Tnfrsf11bRatlupus nephritis  ISOTNFRSF11B (Homo sapiens)7205483associated with Lupus Erythematosus more ...RGD 
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Original Reference(s)
Tnfrsf11bRatconnective tissue disease  ISOTNFRSF11B (Homo sapiens)8554872ClinVar Annotator: match by term: Connective tissue disorderClinVarPMID:25741868
Tnfrsf11bRatgenetic disease  ISOTNFRSF11B (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Tnfrsf11bRathereditary multiple exostoses  ISOTNFRSF11B (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple congenital exostosisClinVarPMID:10679937 more ...
Tnfrsf11bRatPaget's disease of bone 5  ISOTNFRSF11B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:106682 more ...
Tnfrsf11bRattrichorhinophalangeal syndrome type I  ISOTNFRSF11B (Homo sapiens)8554872ClinVar Annotator: match by term: Trichorhinophalangeal dysplasia type IClinVarPMID:25741868
Tnfrsf11bRattrichorhinophalangeal syndrome type III  ISOTNFRSF11B (Homo sapiens)8554872ClinVar Annotator: match by term: Trichorhinophalangeal syndrome and type IIIClinVarPMID:11112658 more ...
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Tnfrsf11bRatosteoporosis  ISSTnfrsf11b (Mus musculus)13592920OMIM:166710MouseDO 
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Tnfrsf11bRatPaget's disease of bone 5  ISOTNFRSF11B (Homo sapiens)7240710 OMIM 

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Tnfrsf11bRat(-)-anisomycin multiple interactionsISOTnfrsf11b (Mus musculus)6480464Anisomycin inhibits the reaction [GHRL protein inhibits the reaction [Uranium results in decreased expression of and results in decreased secretion of TNFRSF11B protein]]CTDPMID:29477364
Tnfrsf11bRat(20S)-ginsenoside Rg3 multiple interactionsEXP 6480464ginsenoside Rg3 inhibits the reaction [Dexamethasone results in decreased expression of TNFRSF11B mRNA] more ...CTDPMID:27387537
Tnfrsf11bRat(S)-nicotine increases expressionEXP 6480464Nicotine results in increased expression of TNFRSF11B mRNACTDPMID:29981921
Tnfrsf11bRat(S)-nicotine multiple interactionsEXP 6480464Dihydro-beta-Erythroidine inhibits the reaction [Nicotine results in increased expression of TNFRSF11B mRNA]CTDPMID:29981921
Tnfrsf11bRat1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane multiple interactionsEXP 64804642 more ...CTDPMID:19414516
Tnfrsf11bRat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionEXP 6480464o and p'-DDT results in increased expression of TNFRSF11B mRNACTDPMID:22937105
Tnfrsf11bRat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane decreases expressionEXP 6480464o and p'-DDT analog results in decreased expression of TNFRSF11B mRNACTDPMID:22937105
Tnfrsf11bRat1,2-dichloroethane decreases expressionISOTnfrsf11b (Mus musculus)6480464ethylene dichloride results in decreased expression of TNFRSF11B mRNACTDPMID:28960355
Tnfrsf11bRat1,2-dimethylhydrazine multiple interactionsEXP 6480464[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in increased expression of TNFRSF11B mRNACTDPMID:27840820
Tnfrsf11bRat1,2-dimethylhydrazine multiple interactionsISOTnfrsf11b (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of TNFRSF11B mRNA]CTDPMID:22206623
Tnfrsf11bRat1,2-dimethylhydrazine increases expressionISOTnfrsf11b (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of TNFRSF11B mRNACTDPMID:22206623
Tnfrsf11bRat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine affects expressionISOTnfrsf11b (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:30529163
Tnfrsf11bRat17alpha-ethynylestradiol affects expressionISOTnfrsf11b (Mus musculus)6480464Ethinyl Estradiol affects the expression of TNFRSF11B mRNACTDPMID:17555576
Tnfrsf11bRat17beta-estradiol multiple interactionsISOTNFRSF11B (Homo sapiens)64804644-(2-aminoethyl)benzenesulfonylfluoride inhibits the reaction [[Estradiol co-treated with Progesterone] results in decreased expression of TNFRSF11B mRNA] more ...CTDPMID:17404688 more ...
Tnfrsf11bRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of TNFRSF11B mRNACTDPMID:32145629
Tnfrsf11bRat17beta-estradiol decreases expressionISOTNFRSF11B (Homo sapiens)6480464Estradiol results in decreased expression of TNFRSF11B mRNACTDPMID:16202921 more ...
Tnfrsf11bRat17beta-estradiol increases expressionISOTNFRSF11B (Homo sapiens)6480464Estradiol results in increased expression of TNFRSF11B mRNA and Estradiol results in increased expression of TNFRSF11B proteinCTDPMID:19619570 and PMID:27576059
Tnfrsf11bRat17beta-estradiol affects expressionISOTNFRSF11B (Homo sapiens)6480464Estradiol affects the expression of TNFRSF11B mRNACTDPMID:14699072
Tnfrsf11bRat17beta-hydroxy-5alpha-androstan-3-one decreases expressionISOTNFRSF11B (Homo sapiens)6480464Dihydrotestosterone results in decreased expression of TNFRSF11B proteinCTDPMID:17189957
Tnfrsf11bRat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISOTNFRSF11B (Homo sapiens)6480464Flutamide inhibits the reaction [Dihydrotestosterone results in decreased expression of TNFRSF11B protein]CTDPMID:17189957

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Biological Process
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Tnfrsf11bRatapoptotic process involved_inIEAUniProtKB-KW:KW-00531600115GO_REF:0000043UniProtGO_REF:0000043
Tnfrsf11bRatextracellular matrix organization acts_upstream_of_or_withinISOTnfrsf11b (Mus musculus)1624291 PMID:18757743RGDPMID:18757743
Tnfrsf11bRatextracellular matrix organization acts_upstream_of_or_withinIEAUniProtKB:O08712 and ensembl:ENSMUSP000000787051600115GO_REF:0000107EnsemblGO_REF:0000107
Tnfrsf11bRatnegative regulation of bone resorption  IMP 730196 RGD 
Tnfrsf11bRatnegative regulation of bone resorption  IDA 1624170 RGD 
Tnfrsf11bRatnegative regulation of odontogenesis of dentin-containing tooth  IEP 1624174 RGD 
Tnfrsf11bRatnegative regulation of odontogenesis of dentin-containing tooth acts_upstream_of_or_withinIEAUniProtKB:O08712 and ensembl:ENSMUSP000000787051600115GO_REF:0000107EnsemblGO_REF:0000107
Tnfrsf11bRatnegative regulation of odontogenesis of dentin-containing tooth acts_upstream_of_or_withinISOTnfrsf11b (Mus musculus)1624291 PMID:14981127RGDPMID:14981127
Tnfrsf11bRatnegative regulation of osteoclast differentiation involved_inISOTnfrsf11b (Mus musculus)1624291 PMID:9168977RGDPMID:9168977
Tnfrsf11bRatnegative regulation of osteoclast differentiation acts_upstream_of_or_withinIEAUniProtKB:O08712 and ensembl:ENSMUSP000000787051600115GO_REF:0000107EnsemblGO_REF:0000107
Tnfrsf11bRatnegative regulation of osteoclast differentiation acts_upstream_of_or_withinISOTnfrsf11b (Mus musculus)1624291 PMID:29415886RGDPMID:29415886
Tnfrsf11bRatnegative regulation of tumor necrosis factor-mediated signaling pathway acts_upstream_of_or_withinISOTnfrsf11b (Mus musculus)1624291 PMID:29415886RGDPMID:29415886
Tnfrsf11bRatnegative regulation of tumor necrosis factor-mediated signaling pathway acts_upstream_of_or_withinIEAUniProtKB:O08712 and ensembl:ENSMUSP000000787051600115GO_REF:0000107EnsemblGO_REF:0000107
Tnfrsf11bRatresponse to arsenic-containing substance  IEP 1624169 RGD 
Tnfrsf11bRatresponse to estrogen  IEP 1624173 RGD 
Tnfrsf11bRatresponse to magnesium ion  IEP 1624175 RGD 
Tnfrsf11bRatresponse to nutrient  IEP 1624172 RGD 
Tnfrsf11bRatresponse to xenobiotic stimulus  IEP 1624171 RGD 
Tnfrsf11bRatsignal transduction involved_inIEAInterPro:IPR0004881600115GO_REF:0000002InterProGO_REF:0000002
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Cellular Component
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Tnfrsf11bRatextracellular matrix located_inIEAUniProtKB:O08712 and ensembl:ENSMUSP000000787051600115GO_REF:0000107EnsemblGO_REF:0000107
Tnfrsf11bRatextracellular matrix located_inISOTnfrsf11b (Mus musculus)1624291 PMID:9108485RGDPMID:9108485
Tnfrsf11bRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Tnfrsf11bRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Tnfrsf11bRatextracellular space  IDA 7205515 RGD 
Tnfrsf11bRatextracellular space located_inIEAUniProtKB:O00300 and ensembl:ENSP000002973501600115GO_REF:0000107EnsemblGO_REF:0000107
Tnfrsf11bRatextracellular space located_inIEAUniProtKB-KW:KW-02021600115GO_REF:0000043UniProtGO_REF:0000043
Tnfrsf11bRatextracellular space located_inISOTNFRSF11B (Homo sapiens)1624291 PMID:15516325RGDPMID:15516325
Tnfrsf11bRatreceptor complex part_ofISOTNFRSF11B (Homo sapiens)1624291 PMID:9168977RGDPMID:9168977
Tnfrsf11bRatreceptor complex part_ofIEAUniProtKB:O00300 and ensembl:ENSP000002973501600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function

  

Imported Annotations - KEGG (archival)

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Original Reference(s)
Tnfrsf11bRatcytokine mediated signaling pathway  IEA 6907045 KEGGrno:04060

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#
Reference Title
Reference Citation
1. Calcium metabolism in adults with severe aortic valve stenosis and preserved renal function. Akat K, etal., Am J Cardiol. 2010 Mar 15;105(6):862-4. doi: 10.1016/j.amjcard.2009.10.065.
2. Decreased serum osteoprotegerin levels in patients with cardiac syndrome X. Altun A, etal., J Endocrinol Invest. 2004 Oct;27(9):839-43.
3. Markers of bone metastases in breast and lung cancers. Bilgin E, etal., Asian Pac J Cancer Prev. 2012;13(9):4331-4.
4. Osteoprotegerin is associated with cardiovascular risk in hypertension and/or diabetes. Blazquez-Medela AM, etal., Eur J Clin Invest. 2012 May;42(5):548-56. doi: 10.1111/j.1365-2362.2011.02619.x. Epub 2011 Nov 4.
5. Telmisartan Prevents Alveolar Bone Loss by Decreasing the Expression of Osteoclasts Markers in Hypertensive Rats With Periodontal Disease. Brito VGB, etal., Front Pharmacol. 2020 Nov 11;11:579926. doi: 10.3389/fphar.2020.579926. eCollection 2020.
6. Long-term sequential receptor activator of NF-kappaB ligand (RANKL) and osteoprotegrin (OPG) expression in lipopolysaccharide-induced rat periapical lesions. Chuang FH, etal., J Oral Pathol Med. 2012 Feb;41(2):186-93. doi: 10.1111/j.1600-0714.2011.01065.x. Epub 2011 Jul 28.
7. Reduced bone resorption and inflammation in apical periodontitis evoked by dietary supplementation with probiotics in rats. Cosme-Silva L, etal., Int Endod J. 2020 Aug;53(8):1084-1092. doi: 10.1111/iej.13311. Epub 2020 May 21.
8. Serum levels of osteoprotegerin and RANKL in patients with ST elevation acute myocardial infarction. Crisafulli A, etal., Clin Sci (Lond). 2005 Oct;109(4):389-95.
9. A mutation in the gene TNFRSF11B encoding osteoprotegerin causes an idiopathic hyperphosphatasia phenotype. Cundy T, etal., Hum Mol Genet. 2002 Sep 1;11(18):2119-27.
10. Imbalance of RANK, RANKL and OPG expression during tibial fracture repair in diabetic rats. de Amorim FP, etal., J Mol Histol. 2008 Aug;39(4):401-8. Epub 2008 Jul 1.
11. Correlations of urinary biomarkers, TNF-like weak inducer of apoptosis (TWEAK), osteoprotegerin (OPG), monocyte chemoattractant protein-1 (MCP-1), and IL-8 with lupus nephritis. El-Shehaby A, etal., J Clin Immunol. 2011 Oct;31(5):848-56. doi: 10.1007/s10875-011-9555-1. Epub 2011 Jun 21.
12. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
13. Oral administration of a nonimmunosuppressant FKBP-12 ligand speeds nerve regeneration. Gold BG, etal., Neuroreport. 1998 Feb 16;9(3):553-8.
14. Early molecular responses of bone to obstructive nephropathy induced by unilateral ureteral obstruction in mice. Gu SS, etal., Nephrology (Carlton). 2012 Nov;17(8):767-73. doi: 10.1111/j.1440-1797.2012.01656.x.
15. Serum osteoprotegerin levels in patients with acute atherothrombotic stroke and lacunar infarct. Guldiken B, etal., Thromb Res. 2007 Jan 24;.
16. Osteoprotegerin concentrations and prognosis in acute ischaemic stroke. Jensen JK, etal., J Intern Med. 2010 Apr;267(4):410-7. doi: 10.1111/j.1365-2796.2009.02163.x. Epub 2009 Aug 26.
17. Combined effect of fluoride and arsenate on gene expression of osteoclast differentiation factor and osteoprotegerin. Jia L and Jin TY, Biomed Environ Sci. 2006 Oct;19(5):375-9.
18. Plasma osteoprotegerin levels predict cardiovascular and all-cause mortality and deterioration of kidney function in type 1 diabetic patients with nephropathy. Jorsal A, etal., Diabetologia. 2008 Nov;51(11):2100-7. doi: 10.1007/s00125-008-1123-8. Epub 2008 Aug 22.
19. Osteoprotegerin is a risk factor for progressive atherosclerosis and cardiovascular disease. Kiechl S, etal., Circulation. 2004 May 11;109(18):2175-80. Epub 2004 Apr 26.
20. Serum osteoprotegerin is a predictor of progression of atherosclerosis and coronary calcification in hemodialysis patients. Kurnatowska I, etal., Nephron Clin Pract. 2011;117(4):c297-304. doi: 10.1159/000321169. Epub 2010 Sep 22.
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PMID:14981127   PMID:15489334   PMID:15516325   PMID:15704000   PMID:16568210   PMID:17443309   PMID:17476578   PMID:17608585   PMID:17627577   PMID:18166509   PMID:18432284   PMID:18476557  
PMID:18757743   PMID:19040304   PMID:19105036   PMID:19257823   PMID:19537860   PMID:19539794   PMID:21519319   PMID:21602131   PMID:22027774   PMID:22878484   PMID:22948539   PMID:23404413  
PMID:23500899   PMID:23954550   PMID:24006456   PMID:24321069   PMID:25200151   PMID:25257532   PMID:26489619   PMID:26677102   PMID:27154288   PMID:28092862   PMID:28473060   PMID:28774557  
PMID:28931423   PMID:29529595   PMID:30077758   PMID:30951948   PMID:32000757   PMID:32307402   PMID:32722636   PMID:32856519   PMID:33834668   PMID:34610044   PMID:34948030   PMID:35842599  
PMID:38923421  



Tnfrsf11b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8787,456,318 - 87,484,324 (-)NCBIGRCr8
mRatBN7.2785,566,520 - 85,594,526 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl785,566,520 - 85,594,538 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx787,463,913 - 87,491,923 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0789,665,094 - 89,693,104 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0789,470,571 - 89,498,581 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0793,798,580 - 93,826,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl793,798,545 - 93,826,665 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0794,436,612 - 94,464,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4790,606,424 - 90,634,431 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1790,640,654 - 90,668,661 (-)NCBI
Celera782,388,596 - 82,416,602 (-)NCBICelera
Cytogenetic Map7q32NCBI
TNFRSF11B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388118,923,557 - 118,951,885 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8118,923,557 - 118,951,885 (-)EnsemblGRCh38hg38GRCh38
GRCh378119,935,796 - 119,964,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368120,004,977 - 120,033,564 (-)NCBINCBI36Build 36hg18NCBI36
Build 348120,004,977 - 120,033,492NCBI
Celera8116,124,073 - 116,152,621 (-)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8115,263,331 - 115,291,874 (-)NCBIHuRef
CHM1_18119,976,820 - 120,005,398 (-)NCBICHM1_1
T2T-CHM13v2.08120,051,990 - 120,080,310 (-)NCBIT2T-CHM13v2.0
Tnfrsf11b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,114,014 - 54,141,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1554,114,015 - 54,141,880 (-)EnsemblGRCm39 Ensembl
GRCm381554,250,619 - 54,278,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1554,250,619 - 54,278,484 (-)EnsemblGRCm38mm10GRCm38
MGSCv371554,082,174 - 54,110,039 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361554,080,702 - 54,108,567 (-)NCBIMGSCv36mm8
Celera1555,801,719 - 55,829,545 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.15NCBI
Tnfrsf11b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541724,804,664 - 24,831,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541724,804,708 - 24,831,338 (-)NCBIChiLan1.0ChiLan1.0
TNFRSF11B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27136,349,949 - 136,380,083 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18111,861,966 - 111,890,819 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08115,614,778 - 115,643,387 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18118,134,305 - 118,162,422 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8118,134,305 - 118,162,422 (-)Ensemblpanpan1.1panPan2
TNFRSF11B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11318,155,765 - 18,183,263 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1318,156,367 - 18,183,444 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1318,157,696 - 18,185,164 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01318,475,888 - 18,503,357 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1318,475,887 - 18,503,320 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11318,206,469 - 18,233,953 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01318,302,728 - 18,330,220 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01318,533,442 - 18,560,917 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf11b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530320,145,169 - 20,172,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647027,571,270 - 27,599,089 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647027,571,263 - 27,598,725 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF11B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl419,850,350 - 19,879,125 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1419,850,212 - 19,879,132 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2421,129,878 - 21,158,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF11B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18113,520,711 - 113,549,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8113,520,596 - 113,548,936 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603926,748,455 - 26,777,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf11b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,138,847 - 17,166,453 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,139,109 - 17,166,398 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tnfrsf11b
115 total Variants

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:127
Interacting mature miRNAs:156
Transcripts:ENSRNOT00000011344
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat

1 to 10 of 44 rows
D7Hmgc3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2785,567,754 - 85,567,922 (+)MAPPERmRatBN7.2
Rnor_6.0793,799,815 - 93,799,982NCBIRnor6.0
Rnor_5.0794,437,847 - 94,438,014UniSTSRnor5.0
RGSC_v3.4790,607,659 - 90,607,826UniSTSRGSC3.4
Celera782,389,831 - 82,389,998UniSTS
RH 3.4 Map7592.1UniSTS
RH 3.4 Map7592.1RGD
Cytogenetic Map7q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000011344   ⟹   ENSRNOP00000011344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl785,566,520 - 85,594,519 (-)Ensembl
Rnor_6.0 Ensembl793,798,545 - 93,826,665 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096742   ⟹   ENSRNOP00000094946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl785,566,523 - 85,594,538 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102998   ⟹   ENSRNOP00000086232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl785,566,520 - 85,576,400 (-)Ensembl
RefSeq Acc Id: NM_012870   ⟹   NP_037002
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8787,456,318 - 87,484,324 (-)NCBI
mRatBN7.2785,566,520 - 85,594,526 (-)NCBI
Rnor_6.0793,798,580 - 93,826,586 (-)NCBI
Rnor_5.0794,436,612 - 94,464,618 (-)NCBI
RGSC_v3.4790,606,424 - 90,634,431 (-)RGD
Celera782,388,596 - 82,416,602 (-)RGD
Sequence:
Protein RefSeqs NP_037002 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB53707 (Get FASTA)   NCBI Sequence Viewer  
  AAH81830 (Get FASTA)   NCBI Sequence Viewer  
  EDM16265 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011344
  ENSRNOP00000011344.3
GenBank Protein O08727 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037002   ⟸   NM_012870
- Peptide Label: precursor
- UniProtKB: O08727 (UniProtKB/Swiss-Prot),   A6HRF7 (UniProtKB/TrEMBL),   A0A8I6A1T0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011344   ⟸   ENSRNOT00000011344
Ensembl Acc Id: ENSRNOP00000086232   ⟸   ENSRNOT00000102998
Ensembl Acc Id: ENSRNOP00000094946   ⟸   ENSRNOT00000096742
Death   TNFR-Cys

Name Modeler Protein Id AA Range Protein Structure
AF-O08727-F1-model_v2 AlphaFold O08727 1-401 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695327
Promoter ID:EPDNEW_R5852
Type:multiple initiation site
Name:Tnfrsf11b_1
Description:TNF receptor superfamily member 11B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0793,826,539 - 93,826,599EPDNEW


1 to 34 of 34 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-33397 BioCyc
Ensembl Genes ENSRNOG00000008336 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011344 ENTREZGENE
  ENSRNOT00000011344.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.533.10 UniProtKB/Swiss-Prot
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot
InterPro DEATH-like_dom_sf UniProtKB/Swiss-Prot
  Death_domain UniProtKB/Swiss-Prot
  TNFR/NGFR_Cys_rich_reg UniProtKB/Swiss-Prot
  TNFR_11 UniProtKB/Swiss-Prot
  TNFR_11B UniProtKB/Swiss-Prot
  TNFRSF_decoy_receptor UniProtKB/Swiss-Prot
KEGG Report rno:25341 UniProtKB/Swiss-Prot
NCBI Gene 25341 ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER UniProtKB/Swiss-Prot
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 11B UniProtKB/Swiss-Prot
Pfam Death UniProtKB/Swiss-Prot
  TNFR_c6 UniProtKB/Swiss-Prot
PhenoGen Tnfrsf11b PhenoGen
PIRSF TNFR_11B UniProtKB/Swiss-Prot
PRINTS TNFACTORR11 UniProtKB/Swiss-Prot
  TNFACTORR11B UniProtKB/Swiss-Prot
PROSITE TNFR_NGFR_1 UniProtKB/Swiss-Prot
  TNFR_NGFR_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008336 RatGTEx
SMART DEATH UniProtKB/Swiss-Prot
  Ephrin_rec_like UniProtKB/Swiss-Prot
  TNFR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47986 UniProtKB/Swiss-Prot
  TNF receptor-like UniProtKB/Swiss-Prot
UniProt A0A8I6A1T0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM34_RAT UniProtKB/TrEMBL
  A6HRF7 ENTREZGENE, UniProtKB/TrEMBL
  O08727 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 34 of 34 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 Tnfrsf11b  TNF receptor superfamily member 11B  Tnfrsf11b  tumor necrosis factor receptor superfamily, member 11b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Tnfrsf11b  tumor necrosis factor receptor superfamily, member 11b  Tnfrsf11b  tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Tnfrsf11b  tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)    tumor necrosis factor receptor superfamily, member 11b  Symbol and Name updated 625702 APPROVED
2003-04-09 Tnfrsf11b  tumor necrosis factor receptor superfamily, member 11b      Symbol and Name updated 629477 APPROVED
2003-03-12 Tnfrsf11b  tumor necrosis factor receptor superfamily, member 11b  Opg  Osteoprotegerin  Data merged from RGD:3232 628472 PROVISIONAL
2002-08-07 Tnfrsf11b        Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Opg  Osteoprotegerin      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_disease prevents ovariectomy-induced bone loss 730033
gene_expression expressed as dimeric forms of 112 kDa and 56 kDa in osteoblasts, osteocytes, and osteoprogenitor cells 70599
gene_function binds to the receptor activator of NF-KB ligand [RANKL] thus preventing the interaction with receptor activator of NF-KB [RANK] 70599
gene_process may play a role in preventing excess bone resorption during dental follicle development 730196
gene_regulation phorbol myristate acetate [PMA], an activator of protein kinase C [PKC], increased expression in a time and concentration dependent manner and this increase was blocked by bisindolyl maleimide [BIM], a protein kinase C inhibitor 70599