Advanced Search (OLGA)

Gene: Clasp2 (cytoplasmic linker associated protein 2) Rattus norvegicus

Analyze

Symbol:

Clasp2

Name:

cytoplasmic linker associated protein 2

RGD ID:

619789

Description:

Enables microtubule binding activity. Involved in cellular response to insulin stimulus; negative regulation of microtubule depolymerization; and positive regulation of protein localization to membrane. Located in microtubule and ruffle membrane. Orthologous to human CLASP2 (cytoplasmic linker associated protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CLIP associating protein 2; CLIP-associating protein 2; cytoplasmic linker-associated protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLASP2 (cytoplasmic linker associated protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Clasp2 (CLIP associating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clasp2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLASP2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLASP2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clasp2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLASP2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLASP2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Clasp2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Clasp2 (cytoplasmic linker associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CLASP2 (cytoplasmic linker associated protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Clasp2 (CLIP associating protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	clasp2 (cytoplasmic linker associated protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	chb	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cls-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cls-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cls-3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	STU1	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	122,555,532 - 122,736,934 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	122,555,524 - 122,737,587 (+)	Ensembl				GRCr8
mRatBN7.2	8	113,677,345 - 113,859,957 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	119,366,644 - 119,474,939 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	117,565,912 - 117,674,206 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	115,408,681 - 115,516,978 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	122,003,719 - 122,185,495 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	122,003,916 - 122,185,495 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	121,317,262 - 121,499,025 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	118,454,426 - 118,562,702 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	112,998,712 - 113,106,880 (+)	NCBI		Celera
RGSC_v3.1	8	118,473,880 - 118,582,155 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

clobetasol (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

DDT (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

FR900359 (ISO)

hydralazine (ISO)

ivermectin (ISO)

lead(0) (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

phenylmercury acetate (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

sunitinib (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

toluene (EXP)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

basement membrane organization (ISO)

cell division (IEA)

cell migration (ISO)

cellular response to insulin stimulus (IEP)

establishment of cell polarity (ISO)

establishment of mitotic spindle localization (IBA)

establishment or maintenance of cell polarity (ISO)

exit from mitosis (ISO,ISS)

Golgi organization (ISO,ISS)

microtubule anchoring (ISO,ISS)

microtubule cytoskeleton organization (ISO,ISS)

microtubule nucleation (ISO,ISS)

microtubule organizing center organization (ISO,ISS)

mitotic spindle assembly (IBA)

mitotic spindle organization (ISO,ISS)

negative regulation of cytoskeleton organization (IEA)

negative regulation of focal adhesion assembly (ISO)

negative regulation of microtubule depolymerization (IDA,IEA,ISO)

negative regulation of stress fiber assembly (ISO)

negative regulation of supramolecular fiber organization (IEA)

negative regulation of wound healing, spreading of epidermal cells (ISO)

platelet-derived growth factor receptor-beta signaling pathway (ISO)

positive regulation of epithelial cell migration (ISO)

positive regulation of exocytosis (ISO)

positive regulation of extracellular matrix disassembly (ISO)

positive regulation of protein localization to membrane (IMP)

presynaptic cytoskeleton organization (ISO)

regulation of actin cytoskeleton organization (ISO)

regulation of axon extension (ISO)

regulation of microtubule polymerization (ISO)

regulation of microtubule polymerization or depolymerization (IEA,ISO)

regulation of microtubule-based process (ISO,ISS)

vesicle targeting (ISO)

Cellular Component

axonal growth cone (ISO)

basal cortex (IBA,ISO)

cell cortex (IEA,ISO)

cell leading edge (ISO,ISS)

centrosome (IEA)

cortical microtubule plus-end (ISO)

cytoplasmic microtubule (IBA,ISO,ISS)

cytoskeleton (IEA)

focal adhesion (ISO)

glutamatergic synapse (ISO)

Golgi apparatus (IEA,ISO,ISS)

kinetochore (IBA,IEA,ISO,ISS)

microtubule (IDA,IEA,ISO)

microtubule cytoskeleton (IEA,ISO)

microtubule organizing center (IBA)

mitotic spindle (IBA,ISO,ISS)

plasma membrane (IEA,ISO,ISS)

ruffle membrane (IDA,IEA,ISO,ISS)

spindle (IEA)

spindle microtubule (IBA)

trans-Golgi network (ISO,ISS)

Molecular Function

actin filament binding (ISO)

dystroglycan binding (ISO)

microtubule binding (IBA,IDA,IEA,ISO)

microtubule plus-end binding (ISO,ISS)

protein binding (ISO)

protein tyrosine kinase binding (ISO)

tubulin binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Clasps are CLIP-115 and -170 associating proteins involved in the regional regulation of microtubule dynamics in motile fibroblasts.	Akhmanova A, etal., Cell 2001 Mar 23;104(6):923-35.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Identification of a role for CLASP2 in insulin action.	Langlais P, etal., J Biol Chem. 2012 Nov 9;287(46):39245-53. doi: 10.1074/jbc.M112.394148. Epub 2012 Sep 19.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16866869	PMID:17113391	PMID:17543864	PMID:19632184	PMID:19946888	PMID:20937854	PMID:22871113	PMID:23940118	PMID:24211587	PMID:24520051	PMID:24859005	PMID:25265211
PMID:25344256	PMID:26003921	PMID:29476059	PMID:30053369	PMID:32357304

Genomics

Comparative Map Data

Clasp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	122,555,532 - 122,736,934 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	122,555,524 - 122,737,587 (+)	Ensembl				GRCr8
mRatBN7.2	8	113,677,345 - 113,859,957 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	119,366,644 - 119,474,939 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	117,565,912 - 117,674,206 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	115,408,681 - 115,516,978 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	122,003,719 - 122,185,495 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	122,003,916 - 122,185,495 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	121,317,262 - 121,499,025 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	118,454,426 - 118,562,702 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	112,998,712 - 113,106,880 (+)	NCBI		Celera
RGSC_v3.1	8	118,473,880 - 118,582,155 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

CLASP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	33,496,245 - 33,718,254 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	33,496,187 - 33,718,414 (-)	Ensembl			hg38	GRCh38
GRCh37	3	33,537,737 - 33,759,746 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	33,512,741 - 33,734,852 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	33,512,741 - 33,734,852	NCBI
Celera	3	33,481,199 - 33,702,919 (-)	NCBI		Celera
Cytogenetic Map	3	p22.3	NCBI
HuRef	3	33,478,162 - 33,700,169 (-)	NCBI		HuRef
CHM1_1	3	33,487,717 - 33,709,704 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	33,497,978 - 33,719,132 (-)	NCBI		T2T-CHM13v2.0

Clasp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	113,567,776 - 113,748,765 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	113,570,541 - 113,748,750 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	113,740,077 - 113,919,697 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	113,741,473 - 113,919,682 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	113,650,591 - 113,828,815 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	113,661,284 - 113,767,152 (+)	NCBI		MGSCv36	mm8
Celera	9	113,450,233 - 113,629,162 (+)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	64.06	NCBI

Clasp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	767,210 - 897,457 (-)	Ensembl
ChiLan1.0	NW_004955421	767,648 - 957,160 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLASP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	33,475,483 - 33,697,425 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	33,480,258 - 33,702,185 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	33,418,300 - 33,640,185 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	33,718,761 - 33,938,773 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	33,721,153 - 33,938,560 (-)	Ensembl			panPan2	panpan1.1

CLASP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	3,261,778 - 3,423,698 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	3,246,522 - 3,421,716 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	3,290,238 - 3,467,789 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	3,502,417 - 3,680,553 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	3,502,267 - 3,681,115 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	3,341,844 - 3,518,555 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	3,467,897 - 3,645,453 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	3,441,174 - 3,619,026 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Clasp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	190,617,726 - 190,801,913 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	23,755,627 - 23,900,014 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	23,756,291 - 23,940,966 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLASP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	19,305,181 - 19,510,585 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	19,305,430 - 19,510,589 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	20,890,430 - 21,096,396 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLASP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	77,969,587 - 78,186,843 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	77,968,860 - 78,186,601 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	51,352,579 - 51,569,107 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clasp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624788	11,441,747 - 11,573,029 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624788	11,441,840 - 11,657,515 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Clasp2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	104,602,868 - 104,785,472 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Clasp2
1337 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	669
Count of miRNA genes:	273
Interacting mature miRNAs:	364
Transcripts:	ENSRNOT00000012545
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

BF397826

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	122,667,978 - 122,668,172 (+)	Marker Load Pipeline
mRatBN7.2	8	113,789,772 - 113,789,966 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	122,116,540 - 122,116,733	NCBI	Rnor6.0
Rnor_5.0	8	121,430,070 - 121,430,263	UniSTS	Rnor5.0
RGSC_v3.4	8	118,493,747 - 118,493,940	UniSTS	RGSC3.4
Celera	8	113,038,026 - 113,038,219	UniSTS
RH 3.4 Map	8	1196.0	UniSTS
Cytogenetic Map	8	q32	UniSTS

BF404140

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	113,767,832 - 113,768,037 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	122,094,409 - 122,094,613	NCBI	Rnor6.0
Rnor_5.0	8	121,407,939 - 121,408,143	UniSTS	Rnor5.0
RGSC_v3.4	8	118,471,807 - 118,472,011	UniSTS	RGSC3.4
Celera	8	113,016,093 - 113,016,297	UniSTS
RH 3.4 Map	8	1205.9	UniSTS
Cytogenetic Map	8	q32	UniSTS

BF390126

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	113,859,026 - 113,859,176 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	122,185,791 - 122,185,940	NCBI	Rnor6.0
Rnor_5.0	8	121,499,321 - 121,499,470	UniSTS	Rnor5.0
RGSC_v3.4	8	118,562,998 - 118,563,147	UniSTS	RGSC3.4
Celera	8	113,107,176 - 113,107,325	UniSTS
RH 3.4 Map	8	1206.4	UniSTS
Cytogenetic Map	8	q32	UniSTS

BF390322

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	113,767,928 - 113,768,110 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	122,094,505 - 122,094,686	NCBI	Rnor6.0
Rnor_5.0	8	121,408,035 - 121,408,216	UniSTS	Rnor5.0
RGSC_v3.4	8	118,471,903 - 118,472,084	UniSTS	RGSC3.4
Celera	8	113,016,189 - 113,016,370	UniSTS
RH 3.4 Map	8	1206.99	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ288060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX570719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY568613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012545 ⟹ ENSRNOP00000012545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,583,167 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,750,451 - 113,858,731 (+)	Ensembl
Rnor_6.0 Ensembl	8	122,076,759 - 122,185,495 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091980 ⟹ ENSRNOP00000071109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,555,525 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl
Rnor_6.0 Ensembl	8	122,003,916 - 122,184,089 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100370 ⟹ ENSRNOP00000095678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,628,616 - 122,737,587 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,750,451 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103269 ⟹ ENSRNOP00000085148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,555,525 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107377 ⟹ ENSRNOP00000083968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,555,525 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111105 ⟹ ENSRNOP00000076941

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,609,613 - 122,736,930 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,731,932 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111450 ⟹ ENSRNOP00000095411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,555,524 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112192 ⟹ ENSRNOP00000081793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113161 ⟹ ENSRNOP00000095387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,555,525 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117265 ⟹ ENSRNOP00000078073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	122,555,525 - 122,736,932 (+)	Ensembl
mRatBN7.2 Ensembl	8	113,677,284 - 113,858,731 (+)	Ensembl

RefSeq Acc Id:

NM_053722 ⟹ NP_446174

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,658 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,750,451 - 113,858,731 (+)	NCBI
Rnor_6.0	8	122,076,759 - 122,185,495 (+)	NCBI
Rnor_5.0	8	121,317,262 - 121,499,025 (+)	NCBI
RGSC_v3.4	8	118,454,426 - 118,562,702 (+)	RGD
Celera	8	112,998,712 - 113,106,880 (+)	RGD

Sequence:

show sequence

TGTTTCTATCTATTTTTGATAGAATCTTTGATTAGTATCAAATTTACTGTATTTGGCCATGTGA
ACTATTAGGAGCTATTCTAGGGTGAGGGAAATTCGGAGGAATGAGGCGGCTGATTTGCAAACGG
ATCTGTGATTATAAAAGCTTTGACGATGAGGAATCAGTGGATGGAAATAGGCCATCATCAGCTG
CTTCAGCCTTCAAGGTTCCTGCACCTAAAACTCCTGGAAACCCTGTCAACAGCGCACGGAAGCC
CGGTTCAGCAGGTGGCCCTAAGGCTGGAGGTACTTCTAAAGAAGGAGGGGCTGGAGCAGTTGAT
GAAGATGATTTTATAAAAGCTTTTACAGATGTTCCTTCTATTCAGATCTATTCTAGTCGAGAAC
TTGAAGAAACGTTAAATAAGATCAGGGAAATTCTGTCAGATGACAAACATGACTGGGACCAGCG
TGCCAACGCACTTAAGAAAATCAGATCACTACTTGTTGCTGGGGCTGCACAGTATGACTGCTTC
TTCCAGCATTTGCGTTTGTTGGACGGCGCACTTAAGCTGTCTGCGAAGGACCTCAGATCCCAGG
TGGTCAGGGAAGCTTGCATCACCGTTGCCCATCTTTCAACGGTTTTGGGAAACAAGTTTGATCA
TGGCGCTGAAGCCATTGTACCTACGCTTTTTAATCTTGTCCCCAATAGTGCAAAAGTCATGGCA
ACTTCTGGATGTGCAGCAATCAGATTTATTATTCGGCATACCCACGTACCCCGACTTATACCTT
TAATAACAAGCAACTGCACATCAAAGTCAGTTCCTGTGAGGAGACGTTCATTTGAATTTTTAGA
TCTGCTGTTGCAAGAGTGGCAGACTCATTCGCTAGAGAGACATGCAGCTGTTTTGGTTGAAACG
ATTAAGAAGGGAATTCATGATGCTGATGCTGAGGCCAGAGTGGAGGCAAGAAAGACATACATGG
GTCTTAGAAACCACTTTCCTGGTGAAGCTGAAACATTGTACAACTCCCTCGAGCCATCCTATCA
GAAAAGTCTTCAAACATACTTAAAGAGTTCTGGAAGTGTAGCTTCTCTTCCACAGTCAGACAGG
TCCTCGTCAAGCTCACAAGAAAGCCTCAATCGTCCTTTTTCATCTAAGTGGTCAACAGCAAATC
CTTCAGCTGTAGCTGGAAGAGTGTCGGTGGGAGGCAGCAAAGCCAGCCCCCTTCCAGGAAGCCT
GCAGCGCTCTCGAAGTGACATTGACGTGAATGCCGCCGCCGGTGCCAAGGCGCATCATGCTGCT
GGACAGGCTGTGCGAAGTGGGCGTTTAGGCGCAGGTGCCCTGAATCCAGGTTCCTATGCATCAC
TAGAGGACACTTCTGACAAGATGGATGGAACAGCATCTGAAGATGGTCGGGTGAGAGCCAAGCT
TTCTACACCACTTGTTGCTGTGGGAAATGCCAAGACCGATTCTAGAGGGAGAAGCCGGACAAAA
ATGGTGTCTCAGTCCCAGCCTGGCAGCAGATCTGGGTCTCCGGGAAGAGTTCTAACCACAACAG
CCCTCTCTACTGTGAGCTCTGGTGCTCAACGAATCCTGGTCAATTCAGCTTCAGCACAGAAGAG
AAGCAAGATACCAAGGAGCCAGGGCTGCAGCAGAGAGGCCAGCCCATCTAGGCTTTCAGTGGCC
CGGAGCAGCCGGATTCCTCGGCCGAGTGTGAGTCAAGGCTGTAGCCGGGAAGCTAGCCGAGAGA
GCAGCAGGGACACAAGTCCGGTCCGCTCTTTCCAGCCCCTTGGTCCAGGATATGGGATGAGCCA
GTCAAGCCGGTTGTCATCCTCTGTCAGTGCCATGCGGGTCCTAAACACAGGCTCCGATGTGGAA
GAGGCGGTAGCTGATGCCTTGCTCTTAGGAGACATACGGACTAAGAAAAAACCTGCTCGAAGAC
GGTATGAATCATACGGAATGCACTCAGATGACGATGCCAACAGCGATGCTTCTAGTGCGTGTTC
AGAACGCTCCTATAGCTCTCGAAATGGTAGTATTCCTACCTACATGAGACAGACAGAAGACGTG
GCAGAAGTCCTCAACAGATGTGCTAGTTCCAATTGGTCAGAGAGGAAAGAAGGCCTCTTGGGTC
TACAGAACTTGTTAAAAAACCAGAGAACACTAAGTCGAGTTGAACTGAAAAGATTGTGTGAAAT
TTTCACAAGAATGTTTGCAGATCCTCATGGCAAGGTGTTCAGCATGTTTTTGGAGACCCTAGTA
GATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTTCTGCTGACACAACTGC
TGAAAAAAATGGGTGCTGACTTGCTTGGGTCTGTTCAGGCAAAGGTTCAGAAAGCCCTTGATGT
TACAAGGGAATCTTTTCCAAATGATCTTCAGTTTAATATCCTAATGAGATTTACAGTTGACCAG
ACCCAAACGCCAAGCTTGAAGGTGAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGC
AGATGGACCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCAC
CTGGACGACAGAGCCCAAAAGCTCTGATGTTCGAAAGGCAGCACAGTCGGTGCTGATTTCTTTG
TTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTTACCAAAAACTTTCCAGGATG
GTGCTACTAAACTTCTTCACAATCACCTTCGAAACACTGGCAATGGCACTCAGAGTTCCATGGG
GAGTCCTTTGACGAGACCAACACCTCGGTCACCAGCCAACTGGTCCAGTCCTCTTACTTCTCCT
ACCAACACGTCACAGAATACGTTATCTCCAAGTGCATTTGATTACGACACAGAGAACATGAATT
CTGAAGACATTTACAGCTCCCTTAGAGGTGTCACTGAGGCAATCCAGAATTTCAGCTTCAGAAG
CCAGGAAGACATGAGTGAGCCGCTGAAGAGGGACCCTAAGAAAGAGGATGGTGACACAGTATGC
AGTGGTCCTGGGATGTCAGATCCAAGAGCAGGAGGCGATGCCCCTGACTCCAGCCAGCCAGCTC
TTGATAATAAAGCATCTTTGCTGCACTCAGTGCCACTCCACTCCTCTCCGCGCTCCCGTGACTA
TAACCCATATAACTACTCAGACAGCATCAGTCCCTTCAACAAGTCTGCCCTCAAGGAAGCCATG
TTTGATGATGACGCCGACCAGTTTCCTGACGATCTCTCCTTAGACCATTCTGACCTAGTTGCAG
AGTTGTTGAAGGAGCTATCTAACCATAATGAACGCATAGAAGAAAGGAAAATTGCCCTGTATGA
GCTCATGAAGCTGACCCAGGAAGAATCGTTCAGTGTTTGGGATGAACACTTCAAAACAATATTA
TTGTTACTGCTTGAGACCCTTGGGGATAAAGAGCCTACAATCCGGGCCTTGGCGTTAAAAGTTT
TAAAAGAAATCTTAAGGCATCAACCAGCAAGATTCAAAAACTATGCAGAGCTAACTGTCATGAA
AACATTGGAAGCACATAAAGATCCTCACAAAGAGGTGGTGAGGTCTGCTGAGGAAGCTGCCTCC
GTGTTGGCTACTTCCATTAGTCCAGAGCAGTGCATCAAAGTGCTTTGTCCAATCATACAGACTG
CTGACTACCCAATTAATCTGGCTGCAATCAAAATGCAAACAAAAGTGATAGAGAGAGTGTCCAA
GGAGACCCTTAACCTGCTCTTACCAGAGATCATGCCAGGTCTAATACAGGGTTATGATAATTCA
GAAAGCAGTGTCCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGTCCATGCGGTAATTGGTGATG
AACTAAAGCCACATCTCAGTCAACTCACGGGTAGTAAAATGAAGCTGCTGAACCTTTACATCAA
ACGTGCACAGACGGGCTCTGCAGGAGCCGACCCCACTACTGATGTTTCTGGACAGAGTTAGTGC
TGCACATGAGCCTCCCAGGTCTCTGAAAGGACAACTGCCTGCCCTCCTCAAGGAAAGGAAACTC
AAATACAGCTTTGGGACTCAGCTACGGTTTCCCAGTTCTAGCCTTTTGTTTTGTTCTGTTTTGT
ATTTTCTGTAACAGAGGGGTGTCCTCAGTCTGCATGTAACTTTATGATAGTTATTCCAAGTTCA
GGAGAAGCAGTATTAACATCAGTTGATCAGTACAAAGTAATTTTTTAATCTAATTCACCATTTC
ACATGTTTGTACTTCTTTGTCTTCCCATTAACCTTTGCCAGTGTTATGATTGTATAAATTTTTT
AAAATGCTGGTTAAACAGGAATGCTTAAAGCTTTAAAAGTTTAACAGTCTAAACTTTTTTTTGC
CTTTATTCAACTGCAGAAGAATATTTTTATTGCTACTTTTGTTCCGTATCATGTCCTATGCTAG
AAATACTGACAATAATGTGAGACAAAGCAGGGCTACTTGGAACTCCAGCCAGACTCTGTTGATG
TGGCGGTGGTACATGTCGTTAGCTGCGACTTCTTTGGGATGACCTCAAAGAGAAATGTCATAGA
ATCAGCCAGTTTTGTAAGACTGATAGTGTCTGTTGGTTCTTGATCTTGCCACCTTTATTTAAAG
CCGTGTCCCTTCTTTTACCACGAAAGAAAGCTGCACCCAATCACCTGCCTCGGCTTCCGTGGGG
ATTAGTACAGTGCCGGGTTTGGTTGCCGAGCCTTTGGTTTATCTTTGTTGTGAATGATGCTTTT
TGTTGTATTTATTAATATCAAATTCACTTATGAATAGACTTGATAATGGAAACAGATGAAAAAA
AATCAAGTGCATGTGTGTCTTTGACTGTTCTGTTTCTCATTTGATAAATTAATTATTGACATGG
GAGTCAACCAGCACCTTCTTGTTGAATGGTGGAACCTGGTTTCCTTTGACCATGAAATTGTCTC
ATAAAAGCACGATCCTGACGAGAGAGAAGACGGTGCCGAGCCTCTTGTCCAGTGGCTCACACTC
TACCTCTTCAGGGCTGACCCTTTAACCAACCCGCTGCCTGGAGTGTCTTGGAAAACTACTTCAA
AGGTGATGTTTTGTTACTTTTTAACATTTTTTAATCACCTCTGCTAACGTTATTTTCATGTGCA
GCCAACTTTCAAATATCACCAGTTTGGGTGAAAGGCCAAATTAGGTCATTTGGAACCAGGATAC
TATTGATTTCTCATCTTGACTTTTGTTTTGTTTTGTTTTTTTGAATCCTAACATGAGGTGAATG
TGACTGGAAAGCAGATGGCTGTGGGAGCAGTTTGCTGTTGTTACAGAGCTACCTGTACTTCGTT
CAGCTGGAAAAATGTAGAAATGTATGTAAAGGGCGTGAGCGGAGAGAACTGGATGGGTGATTGG
TCGGAGAAGCTTTTCCTTTCCTTCCTTTTTGTTCTGTTTTAGCAGCAAGAAAAGATATTACTCC
ATCCCCTCTCCCCTACTGTAACAGTTTTGTTTTCTACTGTTAATGACATTGTGTATTTATAGTT
CTATGCTTACCGTTGTGCATATACTGGCAATAAAACTGTACATAACATTACTTGAAAACCTTAA
AA

hide sequence

RefSeq Acc Id:

XM_017595407 ⟹ XP_017450896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,594 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,750,555 - 113,859,957 (+)	NCBI
Rnor_6.0	8	122,076,665 - 122,185,495 (+)	NCBI

Sequence:

show sequence

TGATGTCACCTTGCAGCTGATTGGCTGTTGCAGCACCTAGGGCAGGGAAGAGAAAGAAAAATGC
CGGCACAAACCTCAGTGGTGGTTCTGTGGTTGTTTCTATCTATTTTTGATAGAATCTTTGATTA
GTATCAAATTTACTGTATTTGGCCATGTGAACTATTAGGAGCTATTCTAGGGTGAGGGAAATTC
GGAGGAATGAGGCGGCTGATTTGCAAACGGATCTGTGATTATAAAAGCTTTGACGATGAGGAAT
CAGTGGATGGAAATAGGCCATCATCAGCTGCTTCAGCCTTCAAGGTTCCTGCACCTAAAACTCC
TGGAAACCCTGTCAACAGCGCACGGAAGCCCGGTTCAGCAGGTGGCCCTAAGGCTGGAGGTACT
TCTAAAGAAGGAGGGGCTGGAGCAGTTGATGAAGATGATTTTATAAAAGCTTTTACAGATGTTC
CTTCTATTCAGATCTATTCTAGTCGAGAACTTGAAGAAACGTTAAATAAGATCAGGGAAATTCT
GTCAGATGACAAACATGACTGGGACCAGCGTGCCAACGCACTTAAGAAAATCAGATCACTACTT
GTTGCTGGGGCTGCACAGTATGACTGCTTCTTCCAGCATTTGCGTTTGTTGGACGGCGCACTTA
AGCTGTCTGCGAAGGACCTCAGATCCCAGGTGGTCAGGGAAGCTTGCATCACCGTTGCCCATCT
TTCAACGGTTTTGGGAAACAAGTTTGATCATGGCGCTGAAGCCATTGTACCTACGCTTTTTAAT
CTTGTCCCCAATAGTGCAAAAGTCATGGCAACTTCTGGATGTGCAGCAATCAGATTTATTATTC
GGCATACCCACGTACCCCGACTTATACCTTTAATAACAAGCAACTGCACATCAAAGTCAGTTCC
TGTGAGGAGACGTTCATTTGAATTTTTAGATCTGCTGTTGCAAGAGTGGCAGACTCATTCGCTA
GAGAGACATGCAGCTGTTTTGGTTGAAACGATTAAGAAGGGAATTCATGATGCTGATGCTGAGG
CCAGAGTGGAGGCAAGAAAGACATACATGGGTCTTAGAAACCACTTTCCTGGTGAAGCTGAAAC
ATTGTACAACTCCCTCGAGCCATCCTATCAGAAAAGTCTTCAAACATACTTAAAGAGTTCTGGA
AGTGTAGCTTCTCTTCCACAGTCAGACAGGTCCTCGTCAAGCTCACAAGAAAGCCTCAATCGTC
CTTTTTCATCTAAGTGGTCAACAGCAAATCCTTCAGCTGTAGCTGGAAGAGTGTCGGTGGGAGG
CAGCAAAGCCAGCCCCCTTCCAGGAAGCCTGCAGCGCTCTCGAAGTGACATTGACGTGAATGCC
GCCGCCGGTGCCAAGGCGCATCATGCTGCTGGACAGGCTGTGCGAAGTGGGCGTTTAGGCGCAG
GTGCCCTGAATCCAGGTTCCTATGCATCACTAGAGGACACTTCTGACAAGATGGATGGAACAGC
ATCTGAAGATGGTCGGGTGAGAGCCAAGCTTTCTACACCACTTGTTGCTGTGGGAAATGCCAAG
ACCGATTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGCGTTCATCGTCACCTG
ACAAAAATGAAGGATCACAATCTGCTAATACCGTTGGTGCTGGCAGCAGATCTGGGTCTCCGGG
AAGAGTTCTAACCACAACAGCCCTCTCTACTGTGAGCTCTGGTGCTCAACGAATCCTGGTCAAT
TCAGCTTCAGCACAGAAGAGAAGCAAGATACCAAGGAGCCAGGGCTGCAGCAGAGAGGCCAGCC
CATCTAGGCTTTCAGTGGCCCGGAGCAGCCGGATTCCTCGGCCGAGTGTGAGTCAAGGCTGTAG
CCGGGAAGCTAGCCGAGAGAGCAGCAGGGACACAAGTCCGGTCCGCTCTTTCCAGCCCCTTGGT
CCAGGATATGGGATGAGCCAGTCAAGCCGGTTGTCATCCTCTGTCAGTGCCATGCGGGTCCTAA
ACACAGGCTCCGATGTGGAAGAGGCGGTAGCTGATGCCTTGCTCTTAGGAGACATACGGACTAA
GAAAAAACCTGCTCGAAGACGGTATGAATCATACGGAATGCACTCAGATGACGATGCCAACAGC
GATGCTTCTAGTGCGTGTTCAGAACGCTCCTATAGCTCTCGAAATGGTAGTATTCCTACCTACA
TGAGACAGACAGAAGACGTGGCAGAAGTCCTCAACAGATGTGCTAGTTCCAATTGGTCAGAGAG
GAAAGAAGGCCTCTTGGGTCTACAGAACTTGTTAAAAAACCAGAGAACACTAAGTCGAGTTGAA
CTGAAAAGATTGTGTGAAATTTTCACAAGAATGTTTGCAGATCCTCATGGCAAGGTGTTCAGCA
TGTTTTTGGAGACCCTAGTAGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTT
TGTTCTGCTGACACAACTGCTGAAAAAAATGGGTGCTGACTTGCTTGGGTCTGTTCAGGCAAAG
GTTCAGAAAGCCCTTGATGTTACAAGGGAATCTTTTCCAAATGATCTTCAGTTTAATATCCTAA
TGAGATTTACAGTTGACCAGACCCAAACGCCAAGCTTGAAGGTGAAGGTGGCTATCCTTAAGTA
CATAGAAACTCTGGCAAAGCAGATGGACCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTG
GCAGTGTCTCGGGTCATCACCTGGACGACAGAGCCCAAAAGCTCTGATGTTCGAAAGGCAGCAC
AGTCGGTGCTGATTTCTTTGTTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTT
ACCAAAAACTTTCCAGGATGGTGCTACTAAACTTCTTCACAATCACCTTCGAAACACTGGCAAT
GGCACTCAGAGTTCCATGGGGAGTCCTTTGACGAGACCAACACCTCGGTCACCAGCCAACTGGT
CCAGTCCTCTTACTTCTCCTACCAACACGTCACAGAATACGTTATCTCCAAGTGCATTTGATTA
CGACACAGAGAACATGAATTCTGAAGACATTTACAGCTCCCTTAGAGGTGTCACTGAGGCAATC
CAGAATTTCAGCTTCAGAAGCCAGGAAGACATGAGTGAGCCGCTGAAGAGGGACCCTAAGAAAG
AGGATGGTGACACAGTATGCAGTGGTCCTGGGATGTCAGATCCAAGAGCAGGAGGCGATGCCCC
TGACTCCAGCCAGCCAGCTCTTGATAATAAAGCATCTTTGCTGCACTCAGTGCCACTCCACTCC
TCTCCGCGCTCCCGTGACTATAACCCATATAACTACTCAGACAGCATCAGTCCCTTCAACAAGT
CTGCCCTCAAGGAAGCCATGTTTGATGATGACGCCGACCAGTTTCCTGACGATCTCTCCTTAGA
CCATTCTGACCTAGTTGCAGAGTTGTTGAAGGAGCTATCTAACCATAATGAACGCATAGAAGAA
AGGAAAATTGCCCTGTATGAGCTCATGAAGCTGACCCAGGAAGAATCGTTCAGTGTTTGGGATG
AACACTTCAAAACAATATTATTGTTACTGCTTGAGACCCTTGGGGATAAAGAGCCTACAATCCG
GGCCTTGGCGTTAAAAGTTTTAAAAGAAATCTTAAGGCATCAACCAGCAAGATTCAAAAACTAT
GCAGAGCTAACTGTCATGAAAACATTGGAAGCACATAAAGATCCTCACAAAGAGGTGGTGAGGT
CTGCTGAGGAAGCTGCCTCCGTGTTGGCTACTTCCATTAGTCCAGAGCAGTGCATCAAAGTGCT
TTGTCCAATCATACAGACTGCTGACTACCCAATTAATCTGGCTGCAATCAAAATGCAAACAAAA
GTGATAGAGAGAGTGTCCAAGGAGACCCTTAACCTGCTCTTACCAGAGATCATGCCAGGTCTAA
TACAGGGTTATGATAATTCAGAAAGCAGTGTCCGGAAAGCTTGTGTCTTCTGCCTGGTGGCTGT
CCATGCGGTAATTGGTGATGAACTAAAGCCACATCTCAGTCAACTCACGGGTAGTAAAATGAAG
CTGCTGAACCTTTACATCAAACGTGCACAGACGGGCTCTGCAGGAGCCGACCCCACTACTGATG
TTTCTGGACAGAGTTAGTGCTGCACATGAGCCTCCCAGGTCTCTGAAAGGACAACTGCCTGCCC
TCCTCAAGGAAAGGAAACTCAAATACAGCTTTGGGACTCAGCTACGGTTTCCCAGTTCTAGCCT
TTTGTTTTGTTCTGTTTTGTATTTTCTGTAACAGAGGGGTGTCCTCAGTCTGCATGTAACTTTA
TGATAGTTATTCCAAGTTCAGGAGAAGCAGTATTAACATCAGTTGATCAGTACAAAGTAATTTT
TTAATCTAATTCACCATTTCACATGTTTGTACTTCTTTGTCTTCCCATTAACCTTTGCCAGTGT
TATGATTGTATAAATTTTTTAAAATGCTGGTTAAACAGGAATGCTTAAAGCTTTAAAAGTTTAA
CAGTCTAAACTTTTTTTTGCCTTTATTCAACTGCAGAAGAATATTTTTATTGCTACTTTTGTTC
CGTATCATGTCCTATGCTAGAAATACTGACAATAATGTGAGACAAAGCAGGGCTACTTGGAACT
CCAGCCAGACTCTGTTGATGTGGCGGTGGTACATGTCGTTAGCTGCGACTTCTTTGGGATGACC
TCAAAGAGAAATGTCATAGAATCAGCCAGTTTTGTAAGACTGATAGTGTCTGTTGGTTCTTGAT
CTTGCCACCTTTATTTAAAGCCGTGTCCCTTCTTTTACCACGAAAGAAAGCTGCACCCAATCAC
CTGCCTCGGCTTCCGTGGGGATTAGTACAGTGCCGGGTTTGGTTGCCGAGCCTTTGGTTTATCT
TTGTTGTGAATGATGCTTTTTGTTGTATTTATTAATATCAAATTCACTTATGAATAGACTTGAT
AATGGAAACAGATGAAAAAAAATCAAGTGCATGTGTGTCTTTGACTGTTCTGTTTCTCATTTGA
TAAATTAATTATTGACATGGGAGTCAACCAGCACCTTCTTGTTGAATGGTGGAACCTGGTTTCC
TTTGACCATGAAATTGTCTCATAAAAGCACGATCCTGACGAGAGAGAAGACGGTGCCGAGCCTC
TTGTCCAGTGGCTCACACTCTACCTCTTCAGGGCTGACCCTTTAACCAACCCGCTGCCTGGAGT
GTCTTGGAAAACTACTTCAAAGGTGATGTTTTGTTACTTTTTAACATTTTTTAATCACCTCTGC
TAACGTTATTTTCATGTGCAGCCAACTTTCAAATATCACCAGTTTGGGTGAAAGGCCAAATTAG
GTCATTTGGAACCAGGATACTATTGATTTCTCATCTTGACTTTTGTTTTGTTTTGTTTTTTTGA
ATCCTAACATGAGGTGAATGTGACTGGAAAGCAGATGGCTGTGGGAGCAGTTTGCTGTTGTTAC
AGAGCTACCTGTACTTCGTTCAGCTGGAAAAATGTAGAAATGTATGTAAAGGGCGTGAGCGGAG
AGAACTGGATGGGTGATTGGTCGGAGAAGCTTTTCCTTTCCTTCCTTTTTGTTCTGTTTTAGCA
GCAAGAAAAGATATTACTCCATCCCCTCTCCCCTACTGTAACAGTTTTGTTTTCTACTGTTAAT
GACATTGTGTATTTATAGTTCTATGCTTACCGTTGTGCATATACTGGCAATAAAACTGTACATA
ACATTACTTGAAAACCTTAA

hide sequence

RefSeq Acc Id:

XM_039080674 ⟹ XP_038936602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080677 ⟹ XP_038936605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080680 ⟹ XP_038936608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,544 - 113,859,957 (+)	NCBI

RefSeq Acc Id:

XM_039080683 ⟹ XP_038936611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080685 ⟹ XP_038936613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080686 ⟹ XP_038936614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080688 ⟹ XP_038936616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080691 ⟹ XP_038936619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,677,367 - 113,859,237 (+)	NCBI

RefSeq Acc Id:

XM_039080695 ⟹ XP_038936623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,595 - 122,736,934 (+)	NCBI
mRatBN7.2	8	113,750,384 - 113,859,957 (+)	NCBI

RefSeq Acc Id:

XM_063264733 ⟹ XP_063120803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264734 ⟹ XP_063120804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264735 ⟹ XP_063120805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264736 ⟹ XP_063120806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264737 ⟹ XP_063120807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264738 ⟹ XP_063120808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264739 ⟹ XP_063120809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264740 ⟹ XP_063120810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264741 ⟹ XP_063120811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264742 ⟹ XP_063120812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264743 ⟹ XP_063120813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264744 ⟹ XP_063120814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264745 ⟹ XP_063120815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264746 ⟹ XP_063120816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264747 ⟹ XP_063120817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264748 ⟹ XP_063120818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264749 ⟹ XP_063120819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264750 ⟹ XP_063120820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264751 ⟹ XP_063120821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264752 ⟹ XP_063120822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264753 ⟹ XP_063120823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264754 ⟹ XP_063120824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264755 ⟹ XP_063120825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264756 ⟹ XP_063120826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,532 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264757 ⟹ XP_063120827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,593 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264758 ⟹ XP_063120828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,607,463 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264759 ⟹ XP_063120829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,594 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264760 ⟹ XP_063120830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,594 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264761 ⟹ XP_063120831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,607,463 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264762 ⟹ XP_063120832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,591 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264763 ⟹ XP_063120833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,594 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264764 ⟹ XP_063120834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,607,463 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264765 ⟹ XP_063120835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,595 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264766 ⟹ XP_063120836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,594 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264767 ⟹ XP_063120837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,628,594 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264768 ⟹ XP_063120838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,607,463 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264769 ⟹ XP_063120839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,607,463 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264770 ⟹ XP_063120840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,607,463 - 122,736,934 (+)	NCBI

RefSeq Acc Id:

XM_063264771 ⟹ XP_063120841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	122,555,546 - 122,736,934 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446174	(Get FASTA)	NCBI Sequence Viewer
	XP_017450896	(Get FASTA)	NCBI Sequence Viewer
	XP_038936602	(Get FASTA)	NCBI Sequence Viewer
	XP_038936605	(Get FASTA)	NCBI Sequence Viewer
	XP_038936608	(Get FASTA)	NCBI Sequence Viewer
	XP_038936611	(Get FASTA)	NCBI Sequence Viewer
	XP_038936613	(Get FASTA)	NCBI Sequence Viewer
	XP_038936614	(Get FASTA)	NCBI Sequence Viewer
	XP_038936616	(Get FASTA)	NCBI Sequence Viewer
	XP_038936619	(Get FASTA)	NCBI Sequence Viewer
	XP_038936623	(Get FASTA)	NCBI Sequence Viewer
	XP_063120803	(Get FASTA)	NCBI Sequence Viewer
	XP_063120804	(Get FASTA)	NCBI Sequence Viewer
	XP_063120805	(Get FASTA)	NCBI Sequence Viewer
	XP_063120806	(Get FASTA)	NCBI Sequence Viewer
	XP_063120807	(Get FASTA)	NCBI Sequence Viewer
	XP_063120808	(Get FASTA)	NCBI Sequence Viewer
	XP_063120809	(Get FASTA)	NCBI Sequence Viewer
	XP_063120810	(Get FASTA)	NCBI Sequence Viewer
	XP_063120811	(Get FASTA)	NCBI Sequence Viewer
	XP_063120812	(Get FASTA)	NCBI Sequence Viewer
	XP_063120813	(Get FASTA)	NCBI Sequence Viewer
	XP_063120814	(Get FASTA)	NCBI Sequence Viewer
	XP_063120815	(Get FASTA)	NCBI Sequence Viewer
	XP_063120816	(Get FASTA)	NCBI Sequence Viewer
	XP_063120817	(Get FASTA)	NCBI Sequence Viewer
	XP_063120818	(Get FASTA)	NCBI Sequence Viewer
	XP_063120819	(Get FASTA)	NCBI Sequence Viewer
	XP_063120820	(Get FASTA)	NCBI Sequence Viewer
	XP_063120821	(Get FASTA)	NCBI Sequence Viewer
	XP_063120822	(Get FASTA)	NCBI Sequence Viewer
	XP_063120823	(Get FASTA)	NCBI Sequence Viewer
	XP_063120824	(Get FASTA)	NCBI Sequence Viewer
	XP_063120825	(Get FASTA)	NCBI Sequence Viewer
	XP_063120826	(Get FASTA)	NCBI Sequence Viewer
	XP_063120827	(Get FASTA)	NCBI Sequence Viewer
	XP_063120828	(Get FASTA)	NCBI Sequence Viewer
	XP_063120829	(Get FASTA)	NCBI Sequence Viewer
	XP_063120830	(Get FASTA)	NCBI Sequence Viewer
	XP_063120831	(Get FASTA)	NCBI Sequence Viewer
	XP_063120832	(Get FASTA)	NCBI Sequence Viewer
	XP_063120833	(Get FASTA)	NCBI Sequence Viewer
	XP_063120834	(Get FASTA)	NCBI Sequence Viewer
	XP_063120835	(Get FASTA)	NCBI Sequence Viewer
	XP_063120836	(Get FASTA)	NCBI Sequence Viewer
	XP_063120837	(Get FASTA)	NCBI Sequence Viewer
	XP_063120838	(Get FASTA)	NCBI Sequence Viewer
	XP_063120839	(Get FASTA)	NCBI Sequence Viewer
	XP_063120840	(Get FASTA)	NCBI Sequence Viewer
	XP_063120841	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAC35166	(Get FASTA)	NCBI Sequence Viewer
	EDL77003	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012545
	ENSRNOP00000071109
	ENSRNOP00000078073
	ENSRNOP00000083968
	ENSRNOP00000095387
	ENSRNOP00000095411
	ENSRNOP00000095678
GenBank Protein	Q99JD4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446174 ⟸ NM_053722

- UniProtKB:

Q99JD4 (UniProtKB/Swiss-Prot), A6I3M4 (UniProtKB/TrEMBL), A0A8I6GL90 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRRLICKRICDYKSFDDEESVDGNRPSSAASAFKVPAPKTPGNPVNSARKPGSAGGPKAGGTSK
EGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVA
GAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLV
PNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLER
HAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSV
ASLPQSDRSSSSSQESLNRPFSSKWSTANPSAVAGRVSVGGSKASPLPGSLQRSRSDIDVNAAA
GAKAHHAAGQAVRSGRLGAGALNPGSYASLEDTSDKMDGTASEDGRVRAKLSTPLVAVGNAKTD
SRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGAQRILVNSASAQKRSKIPRSQGCSREA
SPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGMSQSSRLSSSVSAMRV
LNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPT
YMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKVF
SMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNI
LMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKA
AQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQSSMGSPLTRPTPRSPAN
WSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMSEPLKRDPK
KEDGDTVCSGPGMSDPRAGGDAPDSSQPALDNKASLLHSVPLHSSPRSRDYNPYNYSDSISPFN
KSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERIEERKIALYELMKLTQEESFSVW
DEHFKTILLLLLETLGDKEPTIRALALKVLKEILRHQPARFKNYAELTVMKTLEAHKDPHKEVV
RSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPG
LIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSAGADPTT
DVSGQS

hide sequence

RefSeq Acc Id:	XP_017450896 ⟸ XM_017595407
- Peptide Label:	isoform X39
- UniProtKB:	A0A8L2UIH1 (UniProtKB/TrEMBL), A0A8I6GL90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRLICKRICDYKSFDDEESVDGNRPSSAASAFKVPAPKTPGNPVNSARKPGSAGGPKAGGTSK EGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVA GAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLV PNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLER HAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSV ASLPQSDRSSSSSQESLNRPFSSKWSTANPSAVAGRVSVGGSKASPLPGSLQRSRSDIDVNAAA GAKAHHAAGQAVRSGRLGAGALNPGSYASLEDTSDKMDGTASEDGRVRAKLSTPLVAVGNAKTD SRGRSRTKMVSQSQRSSSPDKNEGSQSANTVGAGSRSGSPGRVLTTTALSTVSSGAQRILVNSA SAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPG YGMSQSSRLSSSVSAMRVLNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDA SSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELK RLCEIFTRMFADPHGKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQ KALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAV SRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGT QSSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQN FSFRSQEDMSEPLKRDPKKEDGDTVCSGPGMSDPRAGGDAPDSSQPALDNKASLLHSVPLHSSP RSRDYNPYNYSDSISPFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERIEERK IALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLKEILRHQPARFKNYAE LTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVI ERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLL NLYIKRAQTGSAGADPTTDVSGQS hide sequence

Ensembl Acc Id:

ENSRNOP00000012545 ⟸ ENSRNOT00000012545

Ensembl Acc Id:

ENSRNOP00000071109 ⟸ ENSRNOT00000091980

RefSeq Acc Id:	XP_038936602 ⟸ XM_039080674
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936605 ⟸ XM_039080677
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936613 ⟸ XM_039080685
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936611 ⟸ XM_039080683
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936614 ⟸ XM_039080686
- Peptide Label:	isoform X23
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936616 ⟸ XM_039080688
- Peptide Label:	isoform X26
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936619 ⟸ XM_039080691
- Peptide Label:	isoform X30
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936608 ⟸ XM_039080680
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936623 ⟸ XM_039080695
- Peptide Label:	isoform X46
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081793 ⟸ ENSRNOT00000112192

Ensembl Acc Id:

ENSRNOP00000095411 ⟸ ENSRNOT00000111450

Ensembl Acc Id:

ENSRNOP00000076941 ⟸ ENSRNOT00000111105

Ensembl Acc Id:

ENSRNOP00000083968 ⟸ ENSRNOT00000107377

Ensembl Acc Id:

ENSRNOP00000095387 ⟸ ENSRNOT00000113161

Ensembl Acc Id:

ENSRNOP00000078073 ⟸ ENSRNOT00000117265

Ensembl Acc Id:

ENSRNOP00000095678 ⟸ ENSRNOT00000100370

Ensembl Acc Id:

ENSRNOP00000085148 ⟸ ENSRNOT00000103269

RefSeq Acc Id:	XP_063120826 ⟸ XM_063264756
- Peptide Label:	isoform X32
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL), A0A8I6AMK8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120803 ⟸ XM_063264733
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120805 ⟸ XM_063264735
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120809 ⟸ XM_063264739
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120815 ⟸ XM_063264745
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120813 ⟸ XM_063264743
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120817 ⟸ XM_063264747
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120820 ⟸ XM_063264750
- Peptide Label:	isoform X24
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120822 ⟸ XM_063264752
- Peptide Label:	isoform X27
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL), A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120806 ⟸ XM_063264736
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120811 ⟸ XM_063264741
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120818 ⟸ XM_063264748
- Peptide Label:	isoform X20
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120808 ⟸ XM_063264738
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120812 ⟸ XM_063264742
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120816 ⟸ XM_063264746
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120819 ⟸ XM_063264749
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120824 ⟸ XM_063264754
- Peptide Label:	isoform X29
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120804 ⟸ XM_063264734
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120810 ⟸ XM_063264740
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120823 ⟸ XM_063264753
- Peptide Label:	isoform X28
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120807 ⟸ XM_063264737
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120814 ⟸ XM_063264744
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120841 ⟸ XM_063264771
- Peptide Label:	isoform X49
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL), A0A8I6AMJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120821 ⟸ XM_063264751
- Peptide Label:	isoform X25
- UniProtKB:	A0A8I5ZX03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120825 ⟸ XM_063264755
- Peptide Label:	isoform X31
- UniProtKB:	A0A8I5ZKF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120828 ⟸ XM_063264758
- Peptide Label:	isoform X34
- UniProtKB:	A0A8I5YBJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120831 ⟸ XM_063264761
- Peptide Label:	isoform X37
- UniProtKB:	A0A8I5YBJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120834 ⟸ XM_063264764
- Peptide Label:	isoform X41
- UniProtKB:	A0A8I5YBJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120838 ⟸ XM_063264768
- Peptide Label:	isoform X45
- UniProtKB:	A0A8I5YBJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120839 ⟸ XM_063264769
- Peptide Label:	isoform X47
- UniProtKB:	A0A8I5YBJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120840 ⟸ XM_063264770
- Peptide Label:	isoform X48
- UniProtKB:	A0A8I5YBJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120832 ⟸ XM_063264762
- Peptide Label:	isoform X38
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120827 ⟸ XM_063264757
- Peptide Label:	isoform X33
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120829 ⟸ XM_063264759
- Peptide Label:	isoform X35
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120836 ⟸ XM_063264766
- Peptide Label:	isoform X43
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120837 ⟸ XM_063264767
- Peptide Label:	isoform X44
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120830 ⟸ XM_063264760
- Peptide Label:	isoform X36
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120833 ⟸ XM_063264763
- Peptide Label:	isoform X40
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120835 ⟸ XM_063264765
- Peptide Label:	isoform X42
- UniProtKB:	A0A8I6GL90 (UniProtKB/TrEMBL)

Protein Domains

TOG

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99JD4-F1-model_v2	AlphaFold	Q99JD4	1-1286	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696351

Promoter ID:

EPDNEW_R6873

Type:

single initiation site

Name:

Clasp2_1

Description:

cytoplasmic linker associated protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6874

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	122,004,001 - 122,004,061	EPDNEW

RGD ID:

13696349

Promoter ID:

EPDNEW_R6874

Type:

single initiation site

Name:

Clasp2_2

Description:

cytoplasmic linker associated protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6873

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	122,076,708 - 122,076,768	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619789	AgrOrtholog
BioCyc Gene	G2FUF-28943	BioCyc
Ensembl Genes	ENSRNOG00000009161	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000012545	ENTREZGENE
	ENSRNOT00000091980	ENTREZGENE
	ENSRNOT00000100370	ENTREZGENE
	ENSRNOT00000107377	ENTREZGENE
	ENSRNOT00000111450	ENTREZGENE
	ENSRNOT00000113161	ENTREZGENE
	ENSRNOT00000117265	ENTREZGENE
Gene3D-CATH	1.25.10.10	UniProtKB/Swiss-Prot
InterPro	ARM-like	UniProtKB/Swiss-Prot
	ARM-type_fold	UniProtKB/Swiss-Prot
	CLASP_N_dom	UniProtKB/Swiss-Prot
	TOG	UniProtKB/Swiss-Prot
KEGG Report	rno:114514	UniProtKB/Swiss-Prot
NCBI Gene	114514	ENTREZGENE
PANTHER	CLASP	UniProtKB/Swiss-Prot
	CLIP-ASSOCIATING PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	CEP104-like_TOG	UniProtKB/Swiss-Prot
	CLASP_N	UniProtKB/Swiss-Prot
PhenoGen	Clasp2	PhenoGen
RatGTEx	ENSRNOG00000009161	RatGTEx
SMART	TOG	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A0G2JZM8_RAT	UniProtKB/TrEMBL
	A0A8I5YBJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZKF9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZX03	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZH0_RAT	UniProtKB/TrEMBL
	A0A8I6AMJ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMK8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GL90	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UIH1	ENTREZGENE, UniProtKB/TrEMBL
	A6I3M4	ENTREZGENE, UniProtKB/TrEMBL
	CLAP2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-29	Clasp2	cytoplasmic linker associated protein 2	Clasp2	CLIP associating protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Clasp2	CLIP-associating protein 2			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Clasp2	CLIP-associating protein 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_physical_interaction	bind cytoplasmic linker proteins (CLIPs) and microtubules	68300
gene_process	may be impoportant for microtubule stabilization	68300

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message