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Gene: Gpr88 (G-protein coupled receptor 88) Rattus norvegicus

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Symbol:

Gpr88

Name:

G-protein coupled receptor 88

RGD ID:

61921

Description:

Predicted to enable G protein-coupled photoreceptor activity; beta2-adrenergic receptor activity; and cytoskeletal motor activity. Predicted to be involved in several processes, including adenylate cyclase-modulating G protein-coupled receptor signaling pathway; motor learning; and phototransduction. Predicted to act upstream of or within locomotory behavior; neuromuscular process controlling balance; and neuronal action potential. Located in cytoplasm; nucleus; and plasma membrane. Orthologous to human GPR88 (G protein-coupled receptor 88); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

G protein-coupled receptor 88; probable G-protein coupled receptor 88; striatum-specific G-protein coupled receptor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPR88 (G protein-coupled receptor 88)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gpr88 (G-protein coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpr88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPR88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPR88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpr88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPR88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPR88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpr88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gpr88 (G protein-coupled receptor 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	XKR5 (XK related 5)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Gpr88 (G-protein coupled receptor 88)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GPR88 (G protein-coupled receptor 88)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gpr88 (G protein-coupled receptor 88)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpr88	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpr88	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	206,876,373 - 206,885,034 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	206,868,585 - 206,884,945 (-)	Ensembl				GRCr8
mRatBN7.2	2	204,191,443 - 204,199,576 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	204,191,427 - 204,199,733 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	211,854,881 - 211,859,447 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	209,749,992 - 209,754,559 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	204,567,036 - 204,571,603 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	219,258,346 - 219,263,819 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	219,258,347 - 219,262,901 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	212,460,210 - 212,464,764 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	196,686,707 - 196,691,227 (-)	NCBI		Celera
RGSC_v3.1	2	212,422,963 - 212,427,518 (-)	NCBI
Cytogenetic Map	2	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Childhood-Onset Chorea with Psychomotor Retardation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(S)-nicotine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chenodeoxycholic acid (ISO)

cobalt dichloride (EXP)

cocaine (EXP,ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDT (EXP)

deoxycholic acid (ISO)

dextran sulfate (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

endosulfan (EXP)

ethanol (ISO)

fenamidone (ISO)

flavonoids (EXP)

folic acid (ISO)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

glyphosate (EXP,ISO)

ifosfamide (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

Moniliformin (ISO)

mono(2-ethylhexyl) phthalate (ISO)

morphine (ISO)

nicotine (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

Soman (EXP)

tartrazine (ISO)

titanium dioxide (ISO)

trimellitic anhydride (ISO)

valproic acid (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ISO,ISS)

adrenergic receptor signaling pathway (IEA)

cellular response to light stimulus (IBA)

detection of visible light (IEA)

G protein-coupled receptor signaling pathway (IBA,IEA,ISO,ISS)

locomotory behavior (ISO)

motor learning (ISO,ISS)

neuromuscular process controlling balance (ISO)

neuronal action potential (ISO)

phototransduction (IBA)

signal transduction (IEA)

Cellular Component

ciliary membrane (IEA,ISO,ISS)

cilium (ISO)

cytoplasm (IDA,IEA)

membrane (IEA)

nucleus (IDA,IEA)

plasma membrane (IBA,IDA,IEA,ISO)

Molecular Function

beta2-adrenergic receptor activity (ISO,ISS)

cytoskeletal motor activity (ISO,ISS)

G protein-coupled photoreceptor activity (IBA)

G protein-coupled receptor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Developmental and adult expression patterns of the G-protein-coupled receptor GPR88 in the rat: Establishment of a dual nuclear-cytoplasmic localization.	Massart R, etal., J Comp Neurol. 2016 Oct 1;524(14):2776-802. doi: 10.1002/cne.23991. Epub 2016 Mar 16.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	A novel G-protein-coupled receptor gene expressed in striatum.	Mizushima K, etal., Genomics 2000 Nov 1;69(3):314-21.
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:19656174	PMID:23064379	PMID:25155879	PMID:26188600	PMID:28154160	PMID:28678544	PMID:32667145

Genomics

Comparative Map Data

Gpr88
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	206,876,373 - 206,885,034 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	206,868,585 - 206,884,945 (-)	Ensembl				GRCr8
mRatBN7.2	2	204,191,443 - 204,199,576 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	204,191,427 - 204,199,733 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	211,854,881 - 211,859,447 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	209,749,992 - 209,754,559 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	204,567,036 - 204,571,603 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	219,258,346 - 219,263,819 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	219,258,347 - 219,262,901 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	212,460,210 - 212,464,764 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	196,686,707 - 196,691,227 (-)	NCBI		Celera
RGSC_v3.1	2	212,422,963 - 212,427,518 (-)	NCBI
Cytogenetic Map	2	q42	NCBI

GPR88
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	100,538,139 - 100,542,021 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	100,538,139 - 100,542,021 (+)	Ensembl			hg38	GRCh38
GRCh37	1	101,003,695 - 101,007,577 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	100,776,316 - 100,780,171 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	100,715,713 - 100,719,591	NCBI
Celera	1	99,264,881 - 99,268,736 (+)	NCBI		Celera
Cytogenetic Map	1	p21.2	NCBI
HuRef	1	99,127,815 - 99,131,777 (+)	NCBI		HuRef
CHM1_1	1	101,119,832 - 101,123,687 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	100,386,520 - 100,390,416 (+)	NCBI		T2T-CHM13v2.0

Gpr88
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	116,043,304 - 116,047,123 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	116,043,303 - 116,047,152 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	116,249,654 - 116,253,540 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	116,249,654 - 116,253,503 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	115,952,572 - 115,956,402 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	116,241,660 - 116,245,458 (-)	NCBI		MGSCv36	mm8
Celera	3	122,679,632 - 122,683,466 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	50.23	NCBI

Gpr88
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955435	5,268,746 - 5,271,237 (+)	NCBI	ChiLan1.0	ChiLan1.0

GPR88
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	126,485,809 - 126,489,693 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	125,643,969 - 125,649,248 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	103,194,721 - 103,200,712 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	101,909,929 - 101,911,740 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

GPR88
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	49,473,399 - 49,478,504 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	49,475,536 - 49,476,669 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	52,146,852 - 52,148,102 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	49,821,259 - 49,822,509 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	49,821,259 - 49,822,413 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	49,513,852 - 49,515,102 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	49,493,123 - 49,494,373 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	49,923,358 - 49,924,608 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gpr88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	110,853,688 - 110,857,668 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936748	657,587 - 662,769 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936748	657,876 - 662,831 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPR88
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	117,618,733 - 117,619,884 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	117,616,596 - 117,623,752 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	129,210,683 - 129,214,011 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPR88
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	32,799,493 - 32,803,502 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	32,801,372 - 32,802,526 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	25,254,394 - 25,259,371 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpr88
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624857	3,435,952 - 3,440,055 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624857	3,435,286 - 3,440,746 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gpr88
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	43,460,234 - 43,465,141 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gpr88
114 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	939
Count of miRNA genes:	324
Interacting mature miRNAs:	425
Transcripts:	ENSRNOT00000037068
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204795005	249795005	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	191709311	217961898	Rat
1302789	Stl26	Serum triglyceride level QTL 26	3.1	0.0035	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	206613059	226891081	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	196140964	251540988	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	205135267	250135267	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	188565047	233565047	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	192287802	229609668	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	184856304	229856304	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	184856304	229856304	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	191709311	217961898	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	192287802	221089121	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	184856304	229856304	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	192287802	237287802	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	175931416	220931416	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	182024327	227024327	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	184482291	229482291	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	202029709	236904960	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	205135267	225627153	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	186850607	231850607	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	192287802	237287802	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	182635347	227635347	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	184856304	229856304	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	203664411	248664411	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat

Markers in Region

RH143430

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	204,193,594 - 204,193,776 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	219,260,498 - 219,260,679	NCBI	Rnor6.0
Rnor_5.0	2	237,337,016 - 237,337,197	UniSTS	Rnor5.0
RGSC_v3.4	2	212,462,361 - 212,462,542	UniSTS	RGSC3.4
Celera	2	196,688,858 - 196,689,039	UniSTS
RH 3.4 Map	2	1482.3	UniSTS
Cytogenetic Map	2	q41	UniSTS

Gpr88

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	204,192,968 - 204,194,010 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	219,259,872 - 219,260,913	NCBI	Rnor6.0
Rnor_5.0	2	237,336,390 - 237,337,431	UniSTS	Rnor5.0
RGSC_v3.4	2	212,461,735 - 212,462,776	UniSTS	RGSC3.4
Celera	2	196,688,232 - 196,689,273	UniSTS
Cytogenetic Map	2	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	86	59	6	339	186	11	141	70	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB042407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037068 ⟹ ENSRNOP00000038233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	206,875,861 - 206,884,009 (-)	Ensembl
mRatBN7.2 Ensembl	2	204,191,427 - 204,199,733 (-)	Ensembl
Rnor_6.0 Ensembl	2	219,258,347 - 219,262,901 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000129009 ⟹ ENSRNOP00000101034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	206,877,583 - 206,880,552 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141206 ⟹ ENSRNOP00000100418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	206,868,585 - 206,884,558 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150135 ⟹ ENSRNOP00000107555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	206,870,722 - 206,884,945 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154821 ⟹ ENSRNOP00000111062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	206,869,116 - 206,884,945 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167227 ⟹ ENSRNOP00000111907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	206,876,033 - 206,884,945 (-)	Ensembl

RefSeq Acc Id:

NM_031696 ⟹ NP_113884

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,876,373 - 206,880,929 (-)	NCBI
mRatBN7.2	2	204,191,444 - 204,195,996 (-)	NCBI
Rnor_6.0	2	219,258,347 - 219,262,901 (-)	NCBI
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI
RGSC_v3.4	2	212,460,210 - 212,464,764 (-)	RGD
Celera	2	196,686,707 - 196,691,227 (-)	RGD

Sequence:

show sequence

GAGATAGGGTGCGCTCCTCTCCAGCTCAGCTTCTGCTCTTGCAGCCAGACATCCTCGCTGTTGC
TGCTGCTGCTGCTGCCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCCACCCTCCT
GGACTTGCAGCCTACCGCTTGACTTTTTCTCCAATTCTACTGCCAGCTGAGGAGACTCCCCACA
GCTGCTGGCTCCTGCCTGGGACCATGTGTGCGAATGCTGCACGGGAAAAGCAAGGCGTTTGCTC
CTGGCATGGATCCCAGCGCAGTTTCTCCTGTTGACTTCTGGACCGCAGATGCAGCTGCTGAGGT
ATTTCCTGGCATCTCTCCCTCTGCTATCACCAGCTAAGGACTGGCCCCAAATCAAGCAGGCAAG
TGTCGGGATGGGCCACGCTACACCAAGCCAACGCTAGGGCGCGAGGTGTGAAGAGTTGGCCAGA
ATGACCAACTCCTCCTCCACTTCGACCTCCACCACCACCGGAGGATCCCTGCTGCTGCTCTGCG
AGGAAGAAGAATCGTGGGCGGGCCGGCGGATCCCGGTGTCTCTCCTGTACTCGGGGCTGGCCAT
CGGGGGCACGCTGGCCAACGGTATGGTCATCTATCTTGTGTCGTCCTTCCGAAAGCTGCAGACC
ACCAGCAACGCCTTCATTGTGAATGGCTGCGCCGCGGATCTCAGCGTCTGCGCCCTCTGGATGC
CACAGGAGGCGGTACTGGGGCTCCTGCCCGCCGGCTCCGCGGAGCCCCCGGGGGACTGGGACAG
TGGCGGAGGCAGCTACAGACTGCTCCGGGGCGGGTTGTTGGGCCTCGGGCTCACTGTGTCCCTT
CTGTCCCATTGCCTCGTGGCTCTGAACCGCTACTTGCTCATCACCAGGGCGCCTGCCACCTACC
AGGTGCTGTACCAGCGGCGCCACACGGCGGGCATGCTGGCACTGTCCTGGGCGCTCGCCTTGGG
TCTGGTGTTGTTGCTCCCGCCTTGGGCTCCCAAGCCGGGAGCGGAGCCCCCGCAAGTCCACTAC
CCCGCGCTCCTGGCGGCGGGAGCGTTGCTGGCACAGACGGCGCTGCTGCTGCACTGCTACCTGG
GCATCGTGCGCCGCGTGCGCGTCAGCGTCAAGCGGGTCAGCGTGCTCAACTTCCACCTGCTGCA
TCAGCTACCGGGCTGCGCCGCCGCCGCCGCCGCCTTCCCCGCCGCCCCGCACGCTCCGGGTGCC
GGAGGCGCCGCTCATCCCGCGCAGCCTCAACCCCTGCCGGCCGCCCTGCAGCCTCGTCGGGCGC
AGCGGCGTCTCAGCGGTTTGTCTGTGCTGCTGCTCTGCTGCGTCTTCCTGCTGGCCACGCAGCC
GCTGGTGTGGGTGAGCCTGGCCAGCGGCTTCTCCCTCCCGGTGCCCTGGGGCGTGCAGGCGGCC
AGCTGGCTCCTGTGCTGCGCCCTGTCGGCGCTCAACCCGCTGCTCTACACTTGGAGGAACGAGG
AGTTCCGCAGATCAGTGCGTTCAGTTCTGCCCGGCGTCGGGGACGCAGCTGCGGCCGCTGCAGC
CGCCACCGCGGTGCCAGCCATGTCCCAGGCGCAACTGGGTACCCGGGCGGCTGGCCAGCATTGG
TAACACACCTTTCTTGGAGGGGCTTCCTAAGCTACTTGCCGCACCGCACCACCTCCTTCTTTTG
TAAGCTATCCCCGTCCCCTGGGAAGATCCCGGTGGAGGAGATTTTCGTCTTCTTTCCTAGTGCA
ATACCTGAACCAAGGTCTTCCCCTAAATGGAGCCCAATTGTGTGCGGCCATTCGACTTTTACCT
TTTTGTTGCTGTGTTCTAAAGACACCCTTAGGTCCATTCAGACACCCAGATCGCAAGGACTTGT
AAACTGGCATTTTAAAAGAACCGGTTAATTTATTTCAAGCTTGCTTTTGAAAAAGAACTTTCAT
AGCAAACAACCCTTCCGACCTCCACCGTCTTACATTCGAAGCGCCTTGAGTGTGTGGGTGTGCA
TGAGCCAAAGGTAACACCGTGGAGGAATACATTGTGTGTGTGTGTGTGTAGACAGTATTCTAAC
CATGCTTCCTTCTGTTGTAGTTTAGTCTTTGTATATTGACCTCGAAGAGTGAAACCACAGGTGT
GTACACGGGCGTGAGTTGCCATTGAGCCCCCAAGCCCTTTATTCTTAAAAGGGTTTGTTTTTTT
TCTTTTCTTTTTAAATTGAGTCATTTTTGAAATGAGATCGACTCTCAAGCCAGTGAGGAAACAA
ACCAAATGTATTATTTTACTCTCCTCTTTATTCCCTTCTAAGGTGGAAAGTTACCGTCGAGTAT
TAAAGTGGAAAAAAATGTCAAGTTTTGGATGGTCCGAAACTAGAAATGGAATTTTGAAAGCAAA
AAAAAGGGGGGGGAGGGGCTATCTATTTTAGGTCGCAGTTTCACATTTTCTAAGGCATGCATAC
TTCTTGCTACCCTCATTTGTAACCGACTTATTTGCCTCTGAGTGTGATCGCAACTTTGAACATT
CTGTACTATAATGGTTGCTAGGGAGGATGACTCCTGTATTCTCTTTAAGATATCTCAATGCACA
TGACATAATTAAACACTGATACCATAATTGCATAGCTAATGTTAGCTGCTATTGCATGCTCCTA
GATGCTAGAACTTATCGGGCATGTGGCATACAAAGCAATACCCATTAGACAAGGACATTTTACT
TCTTCCAGAAGAAAAGGCCTTTCAGTCATTTGAAAAGAGACTTAGACGAACCTGTGGCTACCTA
GAGTTCTTGTCTTGAACTGGTTTGTGAGAAAACTCCCATTTGGGGACTTTATCTCCCCAGTGAA
ACCAATGGTCAGGATGATACCCTAATACAGTCTGGATCCACAAAGGTATTGTGTACTTTAGGGG
TTACACAAGCCACACGTTAGGAAATAGCACTGTCTTATGTTGTTCATATAATATATATATATAT
TACAGAAACATTTACTATTATATCATGTCTGTTGAAGAGGGAATCATGCAGGCAGTTATGCAGG
AGGAGAATGGTCCAAACGGGACTCTGTTCTCCAGTGTATCAGTTGAGGTCCGACATCTTCATCT
TTGACTTCCTAAATGTGGTTAGATGCATTTATAATGTACAATAACATGCGACATCATTTTGTAA
AATTAACAGGGGAGAAAGTAACAAGAGGTGTAGATCAGTCTGTTAGTCACATCAAATCTGAGGC
CAAATAGCCTCGATTAACCCGGTAGTTCAGGAGCGCAGACAGCTTGCTTTGCTGCACTCTTGGA
CCAAGAATGGTAAGGACGCTTGTATATTTGAAAACGTATGGGAGGCACGAGGAAACGGACATTT
TGTAGTAAGACAAAATAAAATAAATATGTTTGTCACTAACAGTACATCAGCAGTCATGTCATTA
ACCAAACTGTGTGCATGTATCATTTTTCTCTTATGGAGATTTTCTTTTTCTGTTTCCAGTTTCC
TGGATTCAGATGTTGAATTAAAGTTTAGATAATGCTTCTCTTGGCTCTAGCTCTTCTTTCTTGG
GTATCTTCTCTCTGTCTGTCTTGAGGATACTGTACCAGAAGACACTGTTCCAAAACACGACTGA
TACAGAGTGACTTCTTTTGTTGGCTGTAAGTTTATTTTCAGTTTCTAAAATGCCTTTTTACTTT
ATATAACTACATAAGCTCCTTACATTGGTCTGAGAAAAGAAATAGCCATGTTTTCTTTCTGTAA
ACACTGAGGAATGGGTTATAAAGAGACAGAGAGGTGGTGATTTTCTAAAGCTCTGTCAACCAGC
CACTCTAGATAAGCGTTGTTCTTGTTTCTCAAAGATGATGCAAACCAGTTTCCTCTCTGTCCTT
ACAATGTGCAACATATATAAAGAGCTTTGTGAATGGGAATCTGATACCTTGCCATGTTTCTGGT
AGCGCTCCCGGGCTGGCACTGCGCCACGTGGGAGACTTTTGATTAATTTACTAGTAATTAACTC
CACAGGACTGACTCCTTTTAGTTTTAAAGTAGCGCTGACGTATCTAAAAACGCCTAGGCGCTGC
CTGCGAGTGTTGGAGTTACTGCTTTGACAAATTAAAGTAATGGAGATTGTGTTCTTATTTAAAT
GAAACCACATATTATCCACTCAGGAATAAAAAAAAAATCCTAACTGCTTAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006233220 ⟹ XP_006233282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,881,090 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,196,496 (-)	NCBI
Rnor_6.0	2	219,258,346 - 219,263,819 (-)	NCBI
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI

Sequence:

show sequence

ATCCTGACATGTTTTCATGGACTCCATAACTTACACATGGGTTCTCTGGGTGTTGATTATCTTG
TAGGTTTGGACAAATTCACAGTGAAGCTTTCCATCATCGAGTACCACACAGAGTAGTTTCCCTG
CCCTGGGCTCCATCTCCTCAGTCCCTACCCCCAGATGGCTGGTGAGCTTTTTCCAGCTTGTGAC
ACAGTCGGGATGGTGTAGCATGCGGCCTTTTCAGATGCTTCCTTTGCTTAATAATAAGCGTTTC
CAGCTTCCTTCGATGTTTTATGTCTTGAAAGATTATTGCTCTTCACTGCTGACTGGTGTTCCAT
TTTCTAGATGGACTGTGGACGTCATCTTTAGATCACCTGACCACGGTATTCCCACACCCCTCTC
ATCTCATGGGAACACGAGCCAAGCTTTGGAGGGGTGACTAGTGATGAGAACAGAATTGAAATTA
CGACTTGAGCTGAGGCTCACATGTTTTCTGTAGCTAATTACTCATGTCCCACTTTGCCAAGGGG
GTGAGGGGCTGAATTTCAATTCAAATGTAATGTAATTTTCCCCGAAACTGTACTAGAGTATATT
TATCGCTGAGAAAAAAAAAGTCTTGCCTCCAGGATGATTCAGATGGAGATGAAATTTTACTCTA
ACATTTAGAGGAGAGGAAGGAAAGAAAAAGATCAGACAGAGTGAAAATAAGAGACAGAATGGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATACTTGCTAACAACAGGCTCCTTT
GAAAAAACGTATTTTTCTCTTTTACAAGTTAGCAGTTACTGAATAATTCATGAGGCACGGAAAG
GCTGTCTTCTCCCTGGGTGATGGATAACTGAGCAGGAGAGCGCTCCAAGTGTGTTTGCCACATC
AGCCAGCACTCTTGCTGGAAGCATAGGGTGCGCTCCTCTCCAGCTCAGCTTCTGCTCTTGCAGC
CAGACATCCTCGCTGCTGCTGCTGCTGCTGCCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCCACCCTCCTGGACTTGCAGCCTACCGCTTGACTTTTTCTCCAATTCTACTGCC
AGCTGAGGAGACTCCCCACAGCTGCTGGCTCCTGCCTGGGACCATGTGTGCGAATGCTGCACGG
GAAAAGCAAGGCGTTTGCTCCTGGCATGGATCCCAGCGCAGTTTCTCCTGTTGACTTCTGGACC
GCAGATGCAGCTGCTGAGGAGGTATTTCCTGGCATCTCTCCCTCTGCTATCACCAGCTAAGGAC
TGGCCCCAAATCAAGGCAAGTGTCGGGATGGGCCACGCTACACCAAGCCAACGCTAGGGCGCGA
GGTGTGAAGAGTTGGCCAGAATGACCAACTCCTCCTCCACTTCGACCTCCACCACCACCGGAGG
ATCCCTGCTGCTGCTCTGCGAGGAAGAAGAATCGTGGGCGGGCCGGCGGATCCCGGTGTCTCTC
CTGTACTCGGGGCTGGCCATCGGGGGCACGCTGGCCAACGGTATGGTCATCTATCTTGTGTCGT
CCTTCCGAAAGCTGCAGACCACCAGCAACGCCTTCATTGTGAATGGCTGCGCCGCGGATCTCAG
CGTCTGCGCCCTCTGGATGCCACAGGAGGCGGTACTGGGGCTCCTGCCCGCCGGCTCCGCGGAG
CCCCCGGGGGACTGGGACAGTGGCGGAGGCAGCTACAGACTGCTCCGGGGCGGGTTGTTGGGCC
TCGGGCTCACTGTGTCCCTTCTGTCCCATTGCCTCGTGGCTCTGAACCGCTACTTGCTCATCAC
CAGGGCGCCTGCCACCTACCAGGTGCTGTACCAGCGGCGCCACACGGCGGGCATGCTGGCACTG
TCCTGGGCGCTCGCCTTGGGTCTGGTGTTGTTGCTCCCGCCTTGGGCTCCCAAGCCGGGAGCGG
AGCCCCCGCAAGTCCACTACCCCGCGCTCCTGGCGGCGGGAGCGTTGCTGGCACAGACGGCGCT
GCTGCTGCACTGCTACCTGGGCATCGTGCGCCGCGTGCGCGTCAGCGTCAAGCGGGTCAGCGTG
CTCAACTTCCACCTGCTGCACCAGCTACCGGGCTGCGCCGCCGCCGCCGCCGCCTTCCCCGCCG
CCCCGCACGCTCCGGGTGCCGGAGGCGCCGCTCATCCCGCGCAGCCTCAACCCCTGCCGGCCGC
CCTGCAGCCTCGTCGGGCGCAGCGGCGTCTCAGCGGTTTGTCTGTGCTGCTGCTCTGCTGCGTC
TTCCTGCTGGCCACGCAGCCGCTGGTGTGGGTGAGCCTGGCCAGCGGCTTCTCCCTCCCGGTGC
CCTGGGGCGTGCAGGCGGCCAGCTGGCTCCTGTGCTGCGCCCTGTCGGCGCTCAACCCGCTGCT
CTATACTTGGAGGAACGAGGAGTTCCGCAGATCAGTGCGTTCAGTTCTGCCCGGCGTCGGGGAC
GCAGCTGCGGCCGCTGCAGCCGCCACCGCGGTGCCAGCCATGTCCCAGGCGCAACTGGGTACCC
GGGCGGCTGGCCAGCATTGGTAACACACCTTTCTTGGAGGGGCTTCCTAAGCTACTTGCCGCAC
CGCACCACCTCCTTCTTTTGTAAGCTATCCCCGTCCCCTGGGAAGATCCCGGTGGAGGAGATTT
TCGTCTTCTTTCCTAGTGCAATACCTGAACCAAGGTCTTCCCCTAAATGGAGCCCAATTGTGTG
CGGCCATTCGACTTTTACCTTTTTGTTGCTGTGTTCTAAAGACACCCTTAGGTCCATTCAGACA
CCCAGATCGCAAGGACTTGTAAACTGGCATTTTAAAAGAACCGGTTAATTTATTTCAAGCTTGC
TTTTGAAAAAGAACTTTCATAGCAAACAACCCTTCCGACCTCCACCGTCTTACATTCGAAGCGC
CTTGAGTGTGTGGGTGTGCATGAGCCAAAGGTAACACCGTGGAGGAATACATTGTGTGTGTGTG
TGTGTAGACAGTATTCTAACCATGCTTCCTTCTGTTGTAGTTTAGTCTTTGTATATTGACCTCG
AAGAGTGAAACCACAGGTGTGTACACGGGCGTGAGTTGCCATTGAGCCCCCAAGCCCTTTATTC
TTAAAAGGGTTTGTTTTTTTTCTTTTCTTTTTAAATTGAGTCATTTTTGAAATGAGATCGACTC
TCAAGCCAGTGAGGAAACAAACCAAATGTATTATTTTACTCTCCTCTTTATTCCCTTCTAAGGT
GGAAAGTTACCGTCGAGTATTAAAGTGGAAAAAAATGTCAAGTTTTGGATGGTCCGAAACTAGA
AATGGAATTTTGAAAGCAAAAAAAAGGGGGGGGAGGGGCTATCTATTTTAGGTCGCAGTTTCAC
ATTTTCTAAGGCATGCACACTTCTTGCTACCCTCATTTGTAACCGACTTATTTGCCTCTGAGTG
TGATCGCAACTTTGAACATTCTGTACTATAATGGTTGCTAGGGAGGATGACTCCTGTATTCTCT
TTAAGATATCTCAATGCACATGACATAATTAAACACTGATACCATAATTGCATAGCTAATGTTA
GCTGCTATTGCATGCTCCTAGATGCTAGAACTTATCGGGCATGTGGCATACAAAGCAATACCCA
TTAGACAAGGACATTTTACTTCTTCCAGAAGAAAAGGCCTTTCAGTCATTTGAAAAGAGACTTA
GACGAACCTGTGGCTACCTAGAGTTCTTGTCTTGAACTGGTTTGTGAGAAAACTCCCATTTGGG
GACTTTATCTCCCCAGTGAAACCAATGGTCAGGATGATACCCTAATACAGTCTGGATCCACAAA
GGTATTGTGTACTTTAGGGGTTACACAAGCCACACGTTAGGAAATAGCACTGTCTTATGTTGTT
CATATAATATATATATATATATATATTACAGAAACATTTACTATTATATCATGTCTGTTGAAGA
GGGAATCATGCAGGCAGTTATGCAGGAGGAGAATGGTCCAAACGGGACTCTGTTCTCCAGTGTA
TCAGTTGAGGTCCGACATCTTCATCTTTGACTTCCTAAATGTGGTTAGATGCATTTATAATGTA
CAATAACATGCGACATCATTTTGTAAAATTAACAGGGGAGAAAGTAACAAGAGGTGTAGATCAG
TCTGTTAGTCACATCAAATCTGAGGCCAAATAGCCTCGATTAACCTGGTAGTTCAGGAGCGCAG
ACAGCTTGCTTTGCTGCACTCTTGGACCAAGAATGGTAAGGACGCTTGTATATTTGAAAACGTA
TGGGAGGCACGAGGAAACGGACATTTTGTAGTAAGACAAAATAAAATAAATATGTTTGTCACTA
ACAGTACATCAGCAGTCATGTCATTAACCAAACTGTGTGCATGTATCATTTTTCTCTTATGGAG
ATTTTCTTTTTCTGTTTCCAGTTTCCTGGATTCAGATGTTGAATTAAAGTTTAGATAATGCTTC
TCTTGGCTCTAGCTCTTCTTTCTTGGGTATCTTCTCTCTGTCTGTCTTGAGGATACTGTACCAG
AAGACACTGTTCCAAAACACGACTGATACAGAGTGACTTCTTTTGTTGGCTGTAAGTTTATTTT
CAGTTTCTAAAATGCCTTTTTACTTTATATAATTACATAAGCTCCTTACATTGGTCTGAGAAAA
GAAATAGCCATGTTTTCTTTCTGTAAACACTGAGGAATGGGTTATAAAGAGAACAGAGAGGTGG
TGATTTTCTAAAGCTCTGTCAACCAGCCACTCTAGATAAGCGTTGTTCTTGTTTCTCAAAGATG
ATGCAAACCAGTTTCCTCTCTGTCCTTACAATGTGCAACATATATAAAGAGCTTTGTGAATGGG
AATCTGATACCTTGCCATGTTTCTGGCTAGCGCTCCCGGGCTGGCACTGCGCCACGTGGGAGAC
TTTTGATTAATTTACTAGTAATTAACTCCACAGGACTGACTCCTTTTAGTTTTAAAGTAGCGCT
GACGTATCTAAAAACGCCTAGGCGCTGCCTGCGAGTGTTGGAGTTACTGCTTTGACAAATTAAA
GTAATGGAGATTGTGTTCTTATTTAAATGAAACCACATATTATCCACTCAGGAATAAAAAAAAA
AAATCCTAACTGCTA

hide sequence

RefSeq Acc Id:

XM_006233221 ⟹ XP_006233283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,881,090 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,196,496 (-)	NCBI
Rnor_6.0	2	219,258,346 - 219,263,819 (-)	NCBI
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI

Sequence:

show sequence

ATCCTGACATGTTTTCATGGACTCCATAACTTACACATGGGTTCTCTGGGTGTTGATTATCTTG
TAGGTTTGGACAAATTCACAGTGAAGCTTTCCATCATCGAGTACCACACAGAGTAGTTTCCCTG
CCCTGGGCTCCATCTCCTCAGTCCCTACCCCCAGATGGCTGGTGAGCTTTTTCCAGCTTGTGAC
ACAGTCGGGATGGTGTAGCATGCGGCCTTTTCAGATGCTTCCTTTGCTTAATAATAAGCGTTTC
CAGCTTCCTTCGATGTTTTATGTCTTGAAAGATTATTGCTCTTCACTGCTGACTGGTGTTCCAT
TTTCTAGATGGACTGTGGACGTCATCTTTAGATCACCTGACCACGGTATTCCCACACCCCTCTC
ATCTCATGGGAACACGAGCCAAGCTTTGGAGGGGTGACTAGTGATGAGAACAGAATTGAAATTA
CGACTTGAGCTGAGGCTCACATGTTTTCTGTAGCTAATTACTCATGTCCCACTTTGCCAAGGGG
GTGAGGGGCTGAATTTCAATTCAAATGTAATGTAATTTTCCCCGAAACTGTACTAGAGTATATT
TATCGCTGAGAAAAAAAAAGTCTTGCCTCCAGGATGATTCAGATGGAGATGAAATTTTACTCTA
ACATTTAGAGGAGAGGAAGGAAAGAAAAAGATCAGACAGAGTGAAAATAAGAGACAGAATGGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATACTTGCTAACAACAGGCTCCTTT
GAAAAAACGTATTTTTCTCTTTTACAAGTTAGCAGTTACTGAATAATTCATGAGGCACGGAAAG
GCTGTCTTCTCCCTGGGTGATGGATAACTGAGCAGGAGAGCGCTCCAAGTGTGTTTGCCACATC
AGCCAGCACTCTTGCTGGAAGCATAGGGTGCGCTCCTCTCCAGCTCAGCTTCTGCTCTTGCAGC
CAGACATCCTCGCTGCTGCTGCTGCTGCTGCCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCCACCCTCCTGGACTTGCAGCCTACCGCTTGACTTTTTCTCCAATTCTACTGCC
AGCTGAGGAGACTCCCCACAGCTGCTGGCTCCTGCCTGGGACCATGTGTGCGAATGCTGCACGG
GAAAAGCAAGGCGTTTGCTCCTGGCATGGATCCCAGCGCAGTTTCTCCTGTTGACTTCTGGACC
GCAGATGCAGCTGCTGAGGAGCAGGCAAGTGTCGGGATGGGCCACGCTACACCAAGCCAACGCT
AGGGCGCGAGGTGTGAAGAGTTGGCCAGAATGACCAACTCCTCCTCCACTTCGACCTCCACCAC
CACCGGAGGATCCCTGCTGCTGCTCTGCGAGGAAGAAGAATCGTGGGCGGGCCGGCGGATCCCG
GTGTCTCTCCTGTACTCGGGGCTGGCCATCGGGGGCACGCTGGCCAACGGTATGGTCATCTATC
TTGTGTCGTCCTTCCGAAAGCTGCAGACCACCAGCAACGCCTTCATTGTGAATGGCTGCGCCGC
GGATCTCAGCGTCTGCGCCCTCTGGATGCCACAGGAGGCGGTACTGGGGCTCCTGCCCGCCGGC
TCCGCGGAGCCCCCGGGGGACTGGGACAGTGGCGGAGGCAGCTACAGACTGCTCCGGGGCGGGT
TGTTGGGCCTCGGGCTCACTGTGTCCCTTCTGTCCCATTGCCTCGTGGCTCTGAACCGCTACTT
GCTCATCACCAGGGCGCCTGCCACCTACCAGGTGCTGTACCAGCGGCGCCACACGGCGGGCATG
CTGGCACTGTCCTGGGCGCTCGCCTTGGGTCTGGTGTTGTTGCTCCCGCCTTGGGCTCCCAAGC
CGGGAGCGGAGCCCCCGCAAGTCCACTACCCCGCGCTCCTGGCGGCGGGAGCGTTGCTGGCACA
GACGGCGCTGCTGCTGCACTGCTACCTGGGCATCGTGCGCCGCGTGCGCGTCAGCGTCAAGCGG
GTCAGCGTGCTCAACTTCCACCTGCTGCACCAGCTACCGGGCTGCGCCGCCGCCGCCGCCGCCT
TCCCCGCCGCCCCGCACGCTCCGGGTGCCGGAGGCGCCGCTCATCCCGCGCAGCCTCAACCCCT
GCCGGCCGCCCTGCAGCCTCGTCGGGCGCAGCGGCGTCTCAGCGGTTTGTCTGTGCTGCTGCTC
TGCTGCGTCTTCCTGCTGGCCACGCAGCCGCTGGTGTGGGTGAGCCTGGCCAGCGGCTTCTCCC
TCCCGGTGCCCTGGGGCGTGCAGGCGGCCAGCTGGCTCCTGTGCTGCGCCCTGTCGGCGCTCAA
CCCGCTGCTCTATACTTGGAGGAACGAGGAGTTCCGCAGATCAGTGCGTTCAGTTCTGCCCGGC
GTCGGGGACGCAGCTGCGGCCGCTGCAGCCGCCACCGCGGTGCCAGCCATGTCCCAGGCGCAAC
TGGGTACCCGGGCGGCTGGCCAGCATTGGTAACACACCTTTCTTGGAGGGGCTTCCTAAGCTAC
TTGCCGCACCGCACCACCTCCTTCTTTTGTAAGCTATCCCCGTCCCCTGGGAAGATCCCGGTGG
AGGAGATTTTCGTCTTCTTTCCTAGTGCAATACCTGAACCAAGGTCTTCCCCTAAATGGAGCCC
AATTGTGTGCGGCCATTCGACTTTTACCTTTTTGTTGCTGTGTTCTAAAGACACCCTTAGGTCC
ATTCAGACACCCAGATCGCAAGGACTTGTAAACTGGCATTTTAAAAGAACCGGTTAATTTATTT
CAAGCTTGCTTTTGAAAAAGAACTTTCATAGCAAACAACCCTTCCGACCTCCACCGTCTTACAT
TCGAAGCGCCTTGAGTGTGTGGGTGTGCATGAGCCAAAGGTAACACCGTGGAGGAATACATTGT
GTGTGTGTGTGTGTAGACAGTATTCTAACCATGCTTCCTTCTGTTGTAGTTTAGTCTTTGTATA
TTGACCTCGAAGAGTGAAACCACAGGTGTGTACACGGGCGTGAGTTGCCATTGAGCCCCCAAGC
CCTTTATTCTTAAAAGGGTTTGTTTTTTTTCTTTTCTTTTTAAATTGAGTCATTTTTGAAATGA
GATCGACTCTCAAGCCAGTGAGGAAACAAACCAAATGTATTATTTTACTCTCCTCTTTATTCCC
TTCTAAGGTGGAAAGTTACCGTCGAGTATTAAAGTGGAAAAAAATGTCAAGTTTTGGATGGTCC
GAAACTAGAAATGGAATTTTGAAAGCAAAAAAAAGGGGGGGGAGGGGCTATCTATTTTAGGTCG
CAGTTTCACATTTTCTAAGGCATGCACACTTCTTGCTACCCTCATTTGTAACCGACTTATTTGC
CTCTGAGTGTGATCGCAACTTTGAACATTCTGTACTATAATGGTTGCTAGGGAGGATGACTCCT
GTATTCTCTTTAAGATATCTCAATGCACATGACATAATTAAACACTGATACCATAATTGCATAG
CTAATGTTAGCTGCTATTGCATGCTCCTAGATGCTAGAACTTATCGGGCATGTGGCATACAAAG
CAATACCCATTAGACAAGGACATTTTACTTCTTCCAGAAGAAAAGGCCTTTCAGTCATTTGAAA
AGAGACTTAGACGAACCTGTGGCTACCTAGAGTTCTTGTCTTGAACTGGTTTGTGAGAAAACTC
CCATTTGGGGACTTTATCTCCCCAGTGAAACCAATGGTCAGGATGATACCCTAATACAGTCTGG
ATCCACAAAGGTATTGTGTACTTTAGGGGTTACACAAGCCACACGTTAGGAAATAGCACTGTCT
TATGTTGTTCATATAATATATATATATATATATATTACAGAAACATTTACTATTATATCATGTC
TGTTGAAGAGGGAATCATGCAGGCAGTTATGCAGGAGGAGAATGGTCCAAACGGGACTCTGTTC
TCCAGTGTATCAGTTGAGGTCCGACATCTTCATCTTTGACTTCCTAAATGTGGTTAGATGCATT
TATAATGTACAATAACATGCGACATCATTTTGTAAAATTAACAGGGGAGAAAGTAACAAGAGGT
GTAGATCAGTCTGTTAGTCACATCAAATCTGAGGCCAAATAGCCTCGATTAACCTGGTAGTTCA
GGAGCGCAGACAGCTTGCTTTGCTGCACTCTTGGACCAAGAATGGTAAGGACGCTTGTATATTT
GAAAACGTATGGGAGGCACGAGGAAACGGACATTTTGTAGTAAGACAAAATAAAATAAATATGT
TTGTCACTAACAGTACATCAGCAGTCATGTCATTAACCAAACTGTGTGCATGTATCATTTTTCT
CTTATGGAGATTTTCTTTTTCTGTTTCCAGTTTCCTGGATTCAGATGTTGAATTAAAGTTTAGA
TAATGCTTCTCTTGGCTCTAGCTCTTCTTTCTTGGGTATCTTCTCTCTGTCTGTCTTGAGGATA
CTGTACCAGAAGACACTGTTCCAAAACACGACTGATACAGAGTGACTTCTTTTGTTGGCTGTAA
GTTTATTTTCAGTTTCTAAAATGCCTTTTTACTTTATATAATTACATAAGCTCCTTACATTGGT
CTGAGAAAAGAAATAGCCATGTTTTCTTTCTGTAAACACTGAGGAATGGGTTATAAAGAGAACA
GAGAGGTGGTGATTTTCTAAAGCTCTGTCAACCAGCCACTCTAGATAAGCGTTGTTCTTGTTTC
TCAAAGATGATGCAAACCAGTTTCCTCTCTGTCCTTACAATGTGCAACATATATAAAGAGCTTT
GTGAATGGGAATCTGATACCTTGCCATGTTTCTGGCTAGCGCTCCCGGGCTGGCACTGCGCCAC
GTGGGAGACTTTTGATTAATTTACTAGTAATTAACTCCACAGGACTGACTCCTTTTAGTTTTAA
AGTAGCGCTGACGTATCTAAAAACGCCTAGGCGCTGCCTGCGAGTGTTGGAGTTACTGCTTTGA
CAAATTAAAGTAATGGAGATTGTGTTCTTATTTAAATGAAACCACATATTATCCACTCAGGAAT
AAAAAAAAAAAATCCTAACTGCTA

hide sequence

RefSeq Acc Id:

XM_006233222 ⟹ XP_006233284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,881,090 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,196,496 (-)	NCBI
Rnor_6.0	2	219,258,346 - 219,263,819 (-)	NCBI
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI

Sequence:

show sequence

ATCCTGACATGTTTTCATGGACTCCATAACTTACACATGGGTTCTCTGGGTGTTGATTATCTTG
TAGGTTTGGACAAATTCACAGTGAAGCTTTCCATCATCGAGTACCACACAGAGTAGTTTCCCTG
CCCTGGGCTCCATCTCCTCAGTCCCTACCCCCAGATGGCTGGTGAGCTTTTTCCAGCTTGTGAC
ACAGTCGGGATGGTGTAGCATGCGGCCTTTTCAGATGCTTCCTTTGCTTAATAATAAGCGTTTC
CAGCTTCCTTCGATGTTTTATGTCTTGAAAGATTATTGCTCTTCACTGCTGACTGGTGTTCCAT
TTTCTAGATGGACTGTGGACGTCATCTTTAGATCACCTGACCACGGTATTCCCACACCCCTCTC
ATCTCATGGGAACACGAGCCAAGCTTTGGAGGGGTGACTAGTGATGAGAACAGAATTGAAATTA
CGACTTGAGCTGAGGCTCACATGTTTTCTGTAGCTAATTACTCATGTCCCACTTTGCCAAGGGG
GTGAGGGGCTGAATTTCAATTCAAATGTAATGTAATTTTCCCCGAAACTGTACTAGAGTATATT
TATCGCTGAGAAAAAAAAAGTCTTGCCTCCAGGATGATTCAGATGGAGATGAAATTTTACTCTA
ACATTTAGAGGAGAGGAAGGAAAGAAAAAGATCAGACAGAGTGAAAATAAGAGACAGAATGGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATACTTGCTAACAACAGGCTCCTTT
GAAAAAACGTATTTTTCTCTTTTACAAGTTAGCAGTTACTGAATAATTCATGAGGCACGGAAAG
GCTGTCTTCTCCCTGGGTGATGGATAACTGAGCAGGAGAGCGCTCCAAGTGTGTTTGCCACATC
AGCCAGCACTCTTGCTGGAAGCATAGGGTGCGCTCCTCTCCAGCTCAGCTTCTGCTCTTGCAGC
CAGACATCCTCGCTGCTGCTGCTGCTGCTGCCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCCACCCTCCTGGACTTGCAGCCTACCGCTTGACTTTTTCTCCAATTCTACTGCC
AGCTGAGGAGACTCCCCACAGCTGCTGGCTCCTGCCTGGGACCATGTGTGCGAATGCTGCACGG
GAAAAGCAAGGCGTTTGCTCCTGGCATGGATCCCAGCGCAGTTTCTCCTGTTGACTTCTGGACC
GCAGATGCAGCTGCTGAGGAGGCAAGTGTCGGGATGGGCCACGCTACACCAAGCCAACGCTAGG
GCGCGAGGTGTGAAGAGTTGGCCAGAATGACCAACTCCTCCTCCACTTCGACCTCCACCACCAC
CGGAGGATCCCTGCTGCTGCTCTGCGAGGAAGAAGAATCGTGGGCGGGCCGGCGGATCCCGGTG
TCTCTCCTGTACTCGGGGCTGGCCATCGGGGGCACGCTGGCCAACGGTATGGTCATCTATCTTG
TGTCGTCCTTCCGAAAGCTGCAGACCACCAGCAACGCCTTCATTGTGAATGGCTGCGCCGCGGA
TCTCAGCGTCTGCGCCCTCTGGATGCCACAGGAGGCGGTACTGGGGCTCCTGCCCGCCGGCTCC
GCGGAGCCCCCGGGGGACTGGGACAGTGGCGGAGGCAGCTACAGACTGCTCCGGGGCGGGTTGT
TGGGCCTCGGGCTCACTGTGTCCCTTCTGTCCCATTGCCTCGTGGCTCTGAACCGCTACTTGCT
CATCACCAGGGCGCCTGCCACCTACCAGGTGCTGTACCAGCGGCGCCACACGGCGGGCATGCTG
GCACTGTCCTGGGCGCTCGCCTTGGGTCTGGTGTTGTTGCTCCCGCCTTGGGCTCCCAAGCCGG
GAGCGGAGCCCCCGCAAGTCCACTACCCCGCGCTCCTGGCGGCGGGAGCGTTGCTGGCACAGAC
GGCGCTGCTGCTGCACTGCTACCTGGGCATCGTGCGCCGCGTGCGCGTCAGCGTCAAGCGGGTC
AGCGTGCTCAACTTCCACCTGCTGCACCAGCTACCGGGCTGCGCCGCCGCCGCCGCCGCCTTCC
CCGCCGCCCCGCACGCTCCGGGTGCCGGAGGCGCCGCTCATCCCGCGCAGCCTCAACCCCTGCC
GGCCGCCCTGCAGCCTCGTCGGGCGCAGCGGCGTCTCAGCGGTTTGTCTGTGCTGCTGCTCTGC
TGCGTCTTCCTGCTGGCCACGCAGCCGCTGGTGTGGGTGAGCCTGGCCAGCGGCTTCTCCCTCC
CGGTGCCCTGGGGCGTGCAGGCGGCCAGCTGGCTCCTGTGCTGCGCCCTGTCGGCGCTCAACCC
GCTGCTCTATACTTGGAGGAACGAGGAGTTCCGCAGATCAGTGCGTTCAGTTCTGCCCGGCGTC
GGGGACGCAGCTGCGGCCGCTGCAGCCGCCACCGCGGTGCCAGCCATGTCCCAGGCGCAACTGG
GTACCCGGGCGGCTGGCCAGCATTGGTAACACACCTTTCTTGGAGGGGCTTCCTAAGCTACTTG
CCGCACCGCACCACCTCCTTCTTTTGTAAGCTATCCCCGTCCCCTGGGAAGATCCCGGTGGAGG
AGATTTTCGTCTTCTTTCCTAGTGCAATACCTGAACCAAGGTCTTCCCCTAAATGGAGCCCAAT
TGTGTGCGGCCATTCGACTTTTACCTTTTTGTTGCTGTGTTCTAAAGACACCCTTAGGTCCATT
CAGACACCCAGATCGCAAGGACTTGTAAACTGGCATTTTAAAAGAACCGGTTAATTTATTTCAA
GCTTGCTTTTGAAAAAGAACTTTCATAGCAAACAACCCTTCCGACCTCCACCGTCTTACATTCG
AAGCGCCTTGAGTGTGTGGGTGTGCATGAGCCAAAGGTAACACCGTGGAGGAATACATTGTGTG
TGTGTGTGTGTAGACAGTATTCTAACCATGCTTCCTTCTGTTGTAGTTTAGTCTTTGTATATTG
ACCTCGAAGAGTGAAACCACAGGTGTGTACACGGGCGTGAGTTGCCATTGAGCCCCCAAGCCCT
TTATTCTTAAAAGGGTTTGTTTTTTTTCTTTTCTTTTTAAATTGAGTCATTTTTGAAATGAGAT
CGACTCTCAAGCCAGTGAGGAAACAAACCAAATGTATTATTTTACTCTCCTCTTTATTCCCTTC
TAAGGTGGAAAGTTACCGTCGAGTATTAAAGTGGAAAAAAATGTCAAGTTTTGGATGGTCCGAA
ACTAGAAATGGAATTTTGAAAGCAAAAAAAAGGGGGGGGAGGGGCTATCTATTTTAGGTCGCAG
TTTCACATTTTCTAAGGCATGCACACTTCTTGCTACCCTCATTTGTAACCGACTTATTTGCCTC
TGAGTGTGATCGCAACTTTGAACATTCTGTACTATAATGGTTGCTAGGGAGGATGACTCCTGTA
TTCTCTTTAAGATATCTCAATGCACATGACATAATTAAACACTGATACCATAATTGCATAGCTA
ATGTTAGCTGCTATTGCATGCTCCTAGATGCTAGAACTTATCGGGCATGTGGCATACAAAGCAA
TACCCATTAGACAAGGACATTTTACTTCTTCCAGAAGAAAAGGCCTTTCAGTCATTTGAAAAGA
GACTTAGACGAACCTGTGGCTACCTAGAGTTCTTGTCTTGAACTGGTTTGTGAGAAAACTCCCA
TTTGGGGACTTTATCTCCCCAGTGAAACCAATGGTCAGGATGATACCCTAATACAGTCTGGATC
CACAAAGGTATTGTGTACTTTAGGGGTTACACAAGCCACACGTTAGGAAATAGCACTGTCTTAT
GTTGTTCATATAATATATATATATATATATATTACAGAAACATTTACTATTATATCATGTCTGT
TGAAGAGGGAATCATGCAGGCAGTTATGCAGGAGGAGAATGGTCCAAACGGGACTCTGTTCTCC
AGTGTATCAGTTGAGGTCCGACATCTTCATCTTTGACTTCCTAAATGTGGTTAGATGCATTTAT
AATGTACAATAACATGCGACATCATTTTGTAAAATTAACAGGGGAGAAAGTAACAAGAGGTGTA
GATCAGTCTGTTAGTCACATCAAATCTGAGGCCAAATAGCCTCGATTAACCTGGTAGTTCAGGA
GCGCAGACAGCTTGCTTTGCTGCACTCTTGGACCAAGAATGGTAAGGACGCTTGTATATTTGAA
AACGTATGGGAGGCACGAGGAAACGGACATTTTGTAGTAAGACAAAATAAAATAAATATGTTTG
TCACTAACAGTACATCAGCAGTCATGTCATTAACCAAACTGTGTGCATGTATCATTTTTCTCTT
ATGGAGATTTTCTTTTTCTGTTTCCAGTTTCCTGGATTCAGATGTTGAATTAAAGTTTAGATAA
TGCTTCTCTTGGCTCTAGCTCTTCTTTCTTGGGTATCTTCTCTCTGTCTGTCTTGAGGATACTG
TACCAGAAGACACTGTTCCAAAACACGACTGATACAGAGTGACTTCTTTTGTTGGCTGTAAGTT
TATTTTCAGTTTCTAAAATGCCTTTTTACTTTATATAATTACATAAGCTCCTTACATTGGTCTG
AGAAAAGAAATAGCCATGTTTTCTTTCTGTAAACACTGAGGAATGGGTTATAAAGAGAACAGAG
AGGTGGTGATTTTCTAAAGCTCTGTCAACCAGCCACTCTAGATAAGCGTTGTTCTTGTTTCTCA
AAGATGATGCAAACCAGTTTCCTCTCTGTCCTTACAATGTGCAACATATATAAAGAGCTTTGTG
AATGGGAATCTGATACCTTGCCATGTTTCTGGCTAGCGCTCCCGGGCTGGCACTGCGCCACGTG
GGAGACTTTTGATTAATTTACTAGTAATTAACTCCACAGGACTGACTCCTTTTAGTTTTAAAGT
AGCGCTGACGTATCTAAAAACGCCTAGGCGCTGCCTGCGAGTGTTGGAGTTACTGCTTTGACAA
ATTAAAGTAATGGAGATTGTGTTCTTATTTAAATGAAACCACATATTATCCACTCAGGAATAAA
AAAAAAAAATCCTAACTGCTA

hide sequence

RefSeq Acc Id:

XM_039103061 ⟹ XP_038958989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,881,616 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,196,703 (-)	NCBI

RefSeq Acc Id:

XM_039103062 ⟹ XP_038958990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,881,640 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,196,704 (-)	NCBI

RefSeq Acc Id:

XM_039103063 ⟹ XP_038958991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,885,034 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,199,576 (-)	NCBI

RefSeq Acc Id:

XM_039103064 ⟹ XP_038958992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	206,877,028 - 206,885,034 (-)	NCBI
mRatBN7.2	2	204,191,443 - 204,199,576 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_113884	(Get FASTA)	NCBI Sequence Viewer
	XP_006233282	(Get FASTA)	NCBI Sequence Viewer
	XP_006233283	(Get FASTA)	NCBI Sequence Viewer
	XP_006233284	(Get FASTA)	NCBI Sequence Viewer
	XP_038958989	(Get FASTA)	NCBI Sequence Viewer
	XP_038958990	(Get FASTA)	NCBI Sequence Viewer
	XP_038958991	(Get FASTA)	NCBI Sequence Viewer
	XP_038958992	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB18244	(Get FASTA)	NCBI Sequence Viewer
	EDL82027	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038233
	ENSRNOP00000038233.2
	ENSRNOP00000100418
	ENSRNOP00000101034
	ENSRNOP00000111907
GenBank Protein	Q9ESP4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_113884 ⟸ NM_031696

- UniProtKB:

Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTNSSSTSTSTTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQT
TSNAFIVNGCAADLSVCALWMPQEAVLGLLPAGSAEPPGDWDSGGGSYRLLRGGLLGLGLTVSL
LSHCLVALNRYLLITRAPATYQVLYQRRHTAGMLALSWALALGLVLLLPPWAPKPGAEPPQVHY
PALLAAGALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGCAAAAAAFPAAPHAPGA
GGAAHPAQPQPLPAALQPRRAQRRLSGLSVLLLCCVFLLATQPLVWVSLASGFSLPVPWGVQAA
SWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAAAAAATAVPAMSQAQLGTRAAGQHW

hide sequence

RefSeq Acc Id:	XP_006233284 ⟸ XM_006233222
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNSSSTSTSTTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQT TSNAFIVNGCAADLSVCALWMPQEAVLGLLPAGSAEPPGDWDSGGGSYRLLRGGLLGLGLTVSL LSHCLVALNRYLLITRAPATYQVLYQRRHTAGMLALSWALALGLVLLLPPWAPKPGAEPPQVHY PALLAAGALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGCAAAAAAFPAAPHAPGA GGAAHPAQPQPLPAALQPRRAQRRLSGLSVLLLCCVFLLATQPLVWVSLASGFSLPVPWGVQAA SWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAAAAAATAVPAMSQAQLGTRAAGQHW hide sequence

RefSeq Acc Id:	XP_006233283 ⟸ XM_006233221
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNSSSTSTSTTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQT TSNAFIVNGCAADLSVCALWMPQEAVLGLLPAGSAEPPGDWDSGGGSYRLLRGGLLGLGLTVSL LSHCLVALNRYLLITRAPATYQVLYQRRHTAGMLALSWALALGLVLLLPPWAPKPGAEPPQVHY PALLAAGALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGCAAAAAAFPAAPHAPGA GGAAHPAQPQPLPAALQPRRAQRRLSGLSVLLLCCVFLLATQPLVWVSLASGFSLPVPWGVQAA SWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAAAAAATAVPAMSQAQLGTRAAGQHW hide sequence

RefSeq Acc Id:	XP_006233282 ⟸ XM_006233220
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNSSSTSTSTTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQT TSNAFIVNGCAADLSVCALWMPQEAVLGLLPAGSAEPPGDWDSGGGSYRLLRGGLLGLGLTVSL LSHCLVALNRYLLITRAPATYQVLYQRRHTAGMLALSWALALGLVLLLPPWAPKPGAEPPQVHY PALLAAGALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGCAAAAAAFPAAPHAPGA GGAAHPAQPQPLPAALQPRRAQRRLSGLSVLLLCCVFLLATQPLVWVSLASGFSLPVPWGVQAA SWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAAAAAATAVPAMSQAQLGTRAAGQHW hide sequence

Ensembl Acc Id:

ENSRNOP00000038233 ⟸ ENSRNOT00000037068

RefSeq Acc Id:	XP_038958991 ⟸ XM_039103063
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958992 ⟸ XM_039103064
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958990 ⟸ XM_039103062
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958989 ⟸ XM_039103061
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESP4 (UniProtKB/Swiss-Prot), A6HV91 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000111062 ⟸ ENSRNOT00000154821

Ensembl Acc Id:

ENSRNOP00000101034 ⟸ ENSRNOT00000129009

Ensembl Acc Id:

ENSRNOP00000100418 ⟸ ENSRNOT00000141206

Ensembl Acc Id:

ENSRNOP00000111907 ⟸ ENSRNOT00000167227

Ensembl Acc Id:

ENSRNOP00000107555 ⟸ ENSRNOT00000150135

Protein Domains

G-protein coupled receptors family 1 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ESP4-F1-model_v2	AlphaFold	Q9ESP4	1-384	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691704

Promoter ID:

EPDNEW_R2229

Type:

initiation region

Name:

Gpr88_1

Description:

G-protein coupled receptor 88

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	219,262,931 - 219,262,991	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61921	AgrOrtholog
BioCyc Gene	G2FUF-51504	BioCyc
Ensembl Genes	ENSRNOG00000026953	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000037068	ENTREZGENE
	ENSRNOT00000037068.4	UniProtKB/Swiss-Prot
	ENSRNOT00000129009	ENTREZGENE
	ENSRNOT00000141206	ENTREZGENE
	ENSRNOT00000167227	ENTREZGENE
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot
InterPro	GPCR_opsins	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot
KEGG Report	rno:64443	UniProtKB/Swiss-Prot
NCBI Gene	64443	ENTREZGENE
PANTHER	OPSIN	UniProtKB/Swiss-Prot
Pfam	7tm_1	UniProtKB/Swiss-Prot
PhenoGen	Gpr88	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000026953	RatGTEx
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot
TIGR	TC231239
UniProt	A6HV91	ENTREZGENE, UniProtKB/TrEMBL
	GPR88_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Gpr88	G-protein coupled receptor 88		G protein-coupled receptor 88	Name updated	1299863	APPROVED
2002-06-10	Gpr88	G protein-coupled receptor 88			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM