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Gene: Stx8 (syntaxin 8) Rattus norvegicus

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Symbol:

Stx8

Name:

syntaxin 8

RGD ID:

61917

Description:

Predicted to enable several functions, including SNAP receptor activity; chloride channel inhibitor activity; and ubiquitin protein ligase binding activity. Involved in endosome to lysosome transport and vesicle fusion. Located in late endosome membrane and lysosomal membrane. Part of SNARE complex. Orthologous to human STX8 (syntaxin 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

syntaxin-8; syntaxin-like protein 3I35

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STX8 (syntaxin 8)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Stx8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stx8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STX8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STX8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stx8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STX8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STX8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stx8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stx8 (syntaxin 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Stx8 (syntaxin 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STX8 (syntaxin 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stx8 (syntaxin 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Syx8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Syx8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VAM7	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	stx8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stx8	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	53,154,572 - 53,393,912 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	53,153,523 - 53,429,541 (+)	Ensembl				GRCr8
mRatBN7.2	10	52,655,643 - 52,900,048 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	52,654,990 - 52,894,993 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	57,324,601 - 57,561,500 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	56,813,619 - 57,050,517 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	52,312,324 - 52,551,325 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	54,512,922 - 54,753,302 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	54,512,983 - 54,753,302 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	54,258,182 - 54,498,841 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	54,700,557 - 54,942,042 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	51,834,263 - 52,070,021 (+)	NCBI		Celera
RGSC_v3.1	10	54,714,179 - 54,955,665 (+)	NCBI
Cytogenetic Map	10	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cisplatin (ISO)

clozapine (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

cyclosporin A (ISO)

D-mannitol (ISO)

DDT (EXP)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (EXP)

haloperidol (EXP)

indometacin (ISO)

isobutanol (ISO)

itraconazole (ISO)

ivermectin (ISO)

methidathion (ISO)

mono(2-ethylhexyl) phthalate (ISO)

O-methyleugenol (ISO)

oxaliplatin (EXP)

sunitinib (ISO)

tamoxifen (ISO)

thapsigargin (ISO)

topotecan (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to type II interferon (ISO)

early endosome to late endosome transport (IEA,ISO)

endosome to lysosome transport (IDA)

intracellular protein transport (IBA)

regulation of protein localization to plasma membrane (IEA,ISO)

vesicle docking (IBA)

vesicle fusion (IBA,IDA)

vesicle-mediated transport (IDA)

Cellular Component

cytoplasm (IEA)

early endosome (IEA,ISO)

endomembrane system (IBA,IEA)

endosome (IEA,ISO)

late endosome (IEA,ISO)

late endosome membrane (IDA)

lysosomal membrane (IDA)

membrane (IEA)

perinuclear region of cytoplasm (IEA,ISO)

phagocytic vesicle (ISO)

recycling endosome (IEA,ISO)

SNARE complex (IBA,IDA)

trans-Golgi network (IEA,ISO)

vesicle (IEA,ISO)

Molecular Function

chloride channel inhibitor activity (IEA,ISO)

protein binding (ISO)

SNAP receptor activity (IBA)

SNARE binding (IBA)

syntaxin binding (IEA,ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs.	Antonin W, etal., Nat Struct Biol 2002 Feb;9(2):107-11.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	Combinatorial SNARE complexes with VAMP7 or VAMP8 define different late endocytic fusion events.	Pryor PR, etal., EMBO Rep. 2004 Jun;5(6):590-5. Epub 2004 May 7.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Preferential association of syntaxin 8 with the early endosome.	Subramaniam VN, etal., J Cell Sci 2000 Mar;113 ( Pt 6)(2):997-1008.
11.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:10564279	PMID:11101518	PMID:15689499	PMID:18570918	PMID:18821010	PMID:19144319	PMID:22871113	PMID:24659781	PMID:24872407

Genomics

Comparative Map Data

Stx8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	53,154,572 - 53,393,912 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	53,153,523 - 53,429,541 (+)	Ensembl				GRCr8
mRatBN7.2	10	52,655,643 - 52,900,048 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	52,654,990 - 52,894,993 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	57,324,601 - 57,561,500 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	56,813,619 - 57,050,517 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	52,312,324 - 52,551,325 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	54,512,922 - 54,753,302 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	54,512,983 - 54,753,302 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	54,258,182 - 54,498,841 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	54,700,557 - 54,942,042 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	51,834,263 - 52,070,021 (+)	NCBI		Celera
RGSC_v3.1	10	54,714,179 - 54,955,665 (+)	NCBI
Cytogenetic Map	10	q24	NCBI

STX8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	9,250,471 - 9,575,820 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	9,250,471 - 9,576,591 (-)	Ensembl			hg38	GRCh38
GRCh37	17	9,153,788 - 9,479,137 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	9,094,513 - 9,420,000 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	9,094,513 - 9,420,000	NCBI
Celera	17	9,185,566 - 9,511,610 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	9,052,731 - 9,379,133 (-)	NCBI		HuRef
CHM1_1	17	9,162,819 - 9,489,516 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	9,157,469 - 9,484,308 (-)	NCBI		T2T-CHM13v2.0

Stx8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	67,857,237 - 68,097,974 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	67,857,019 - 68,097,974 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	67,966,411 - 68,207,148 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	67,966,193 - 68,207,148 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	67,779,985 - 68,020,650 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	67,782,678 - 68,023,343 (+)	NCBI		MGSCv36	mm8
Celera	11	74,904,672 - 75,144,681 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	41.2	NCBI

Stx8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	7,523,464 - 7,792,056 (+)	Ensembl
ChiLan1.0	NW_004955467	7,524,223 - 7,789,630 (+)	NCBI	ChiLan1.0	ChiLan1.0

STX8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	64,169,987 - 64,497,426 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	68,980,428 - 69,307,350 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	42,076,600 - 42,403,334 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	46,816,709 - 47,141,923 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	46,816,859 - 47,141,816 (+)	Ensembl			panPan2	panpan1.1

STX8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	33,834,218 - 34,091,827 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	33,834,279 - 34,091,757 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	33,970,462 - 34,228,208 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	33,937,733 - 34,196,280 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	33,937,794 - 34,196,194 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	33,904,727 - 34,162,119 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	33,862,380 - 34,120,132 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	34,038,879 - 34,300,241 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stx8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	48,854,575 - 49,104,600 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	2,328,740 - 2,578,791 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	2,328,763 - 2,578,788 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STX8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	54,296,995 - 54,544,646 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	54,296,988 - 54,544,668 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	57,133,672 - 57,198,153 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STX8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	8,613,551 - 8,937,428 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	12,406,787 - 12,742,033 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stx8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	11,712,667 - 11,992,201 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stx8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	47,567,448 - 47,801,376 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stx8
1596 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	39
Interacting mature miRNAs:	42
Transcripts:	ENSRNOT00000005204
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	47489017	69161158	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	52162433	75582749	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578762	Toxo1	Toxoplasma gondii resistance QTL 1			brain integrity trait (VT:0010579)	percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)	10	52699004	59876693	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Got208

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	52,691,534 - 52,691,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	54,548,870 - 54,549,061	NCBI	Rnor6.0
Rnor_5.0	10	54,294,117 - 54,294,308	UniSTS	Rnor5.0
RGSC_v3.4	10	54,736,317 - 54,736,508	UniSTS	RGSC3.4
Celera	10	51,869,818 - 51,870,009	UniSTS
Cytogenetic Map	10	q24	UniSTS

D10Got207

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	52,700,902 - 52,701,134 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	54,558,238 - 54,558,467	NCBI	Rnor6.0
Rnor_5.0	10	54,303,485 - 54,303,714	UniSTS	Rnor5.0
RGSC_v3.4	10	54,745,685 - 54,745,914	UniSTS	RGSC3.4
Celera	10	51,879,198 - 51,879,427	UniSTS
Cytogenetic Map	10	q24	UniSTS

RH137905

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	52,662,109 - 52,662,239 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	54,519,448 - 54,519,577	NCBI	Rnor6.0
Rnor_5.0	10	54,264,695 - 54,264,824	UniSTS	Rnor5.0
RGSC_v3.4	10	54,706,895 - 54,707,024	UniSTS	RGSC3.4
Celera	10	51,840,406 - 51,840,535	UniSTS
Cytogenetic Map	10	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF033109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005204 ⟹ ENSRNOP00000005204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,153,766 - 53,393,912 (+)	Ensembl
mRatBN7.2 Ensembl	10	52,654,990 - 52,894,993 (+)	Ensembl
Rnor_6.0 Ensembl	10	54,512,983 - 54,753,302 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116831 ⟹ ENSRNOP00000079694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,157,568 - 53,300,551 (+)	Ensembl
mRatBN7.2 Ensembl	10	52,658,646 - 52,801,835 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124616 ⟹ ENSRNOP00000112058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,153,523 - 53,393,912 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132933 ⟹ ENSRNOP00000112080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,153,937 - 53,429,541 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137475 ⟹ ENSRNOP00000107626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,154,423 - 53,356,789 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148583 ⟹ ENSRNOP00000098774

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,154,423 - 53,384,235 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170998 ⟹ ENSRNOP00000105192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	53,153,914 - 53,393,911 (+)	Ensembl

RefSeq Acc Id:

NM_031656 ⟹ NP_113844

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,672 - 53,393,912 (+)	NCBI
mRatBN7.2	10	52,655,750 - 52,894,993 (+)	NCBI
Rnor_6.0	10	54,512,985 - 54,753,302 (+)	NCBI
Rnor_5.0	10	54,258,182 - 54,498,841 (+)	NCBI
RGSC_v3.4	10	54,700,557 - 54,942,042 (+)	RGD
Celera	10	51,834,263 - 52,070,021 (+)	RGD

Sequence:

show sequence

AGCTGCAGGCGGAGACTGCACCATGGCCCCAGACCCCTGGTTCTCCACGTACGATTCTACTTGT
CAGATTGCCCAAGAAATCGCTGAGAAGATTCAAGAACGAAATCAGTGTGAAAGAAGAGGTGAGA
AGACACCTAAGCTTACCCTGACAATCAGAACTTTGTTGAAGAATCTGAAGGTAAAGATCGACCT
CTTGAAGGACTTACTTCTAAGAGCTGTGTCGACGCGCCAGATAACACAACTGGAGGGGGATCGA
AGACAGAACCTTCTGGATGATCTTGTCACCCGAGAGAGACTGCTCCTGGCATCGTTTAAGAATG
AGGGTTCCGAGCCGGATTTGATCAGGTCCAGCCTGATGAGTGAAGAAGCAAAGCGAGGAACTCC
CAACCCTTGGCTCTGTGAGGAGCCGGAGGAGACCAGAGGCTTGGGTTTCGATGAGATCCGGCAA
CAGCAGCAGAAAATTATTCAAGAACAGGACGCAGGTCTTGATGCCCTTTCCTCTATCATAAGTC
GCCAAAAGCAAATGGGCCAGGAGATTGGGAATGAACTGGACGAACAGAACGAGATCATCGATGA
CCTTGCCAACCTGGTGGAGAACACAGATGAGAAGCTTCGCACTGAAGCCAGGCGAGTGACCCTG
GTGGACAGAAAGTCAGCTTCCTGTGGGATGATAATGGTGATCTTATTGCTGCTCGTGGCTATTG
TGGTGGTTGCAGTGTGGCCAACCAACTGATGGCAATAAGGGGACCACCCGCAGTGACACAGCCA
ACAATGAGTGAAAGCCCAGCACCCTTTTGGTACACAACACCTCCTCTCAATAAATTCTCCACGC
TCCCGGCAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017597495 ⟹ XP_017452984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,575 - 53,243,904 (+)	NCBI
mRatBN7.2	10	52,655,644 - 52,716,577 (+)	NCBI
Rnor_6.0	10	54,512,922 - 54,577,524 (+)	NCBI

Sequence:

show sequence

CAAACTGCGGAGAATGAGCCGCGCGGGCCGCCGTAGTCAGCTGCTACGAGCAGGAAGTGTCCCA
GCTGCAGGCGGAGACTGCACCATGGCCCCAGACCCCTGGTTCTCCACGTACGATTCTACTTGTC
AGATTGCCCAAGAAATCGCTGAGAAGATTCAAGAACGAAATCAGTGTGAAAGAAGAGGTGAGAA
GACACCTAAGCTTACCCTGACAATCAGAACTTTGTTGAAGAATCTGAAGGTAAAGATCGACCTC
TTGAAGGACTTACTTCTAAGAGCTGTGTCGACGCGCCAGATAACACAACTGGAGGGGGATCGAA
GACAGAACCTTCTGGATGATCTTGTCACCCGAGAGAGACTGCTCCTGGCATCGTTTAAGAATGA
GGGTTCCGAGCCGGATTTGATCAGGTCCAGCCTGATGAGTGAAGAAGCAAAGCGAGGAACTCCC
AACCCTTGGCTCTGTGAGGAGCCGGAGGAGACCAGAGGCTTGGGTTTCGATGAGATCCGGCAAC
AGCAGCAGAAAATTATTCAAGAACAGGACGCAGGTCTTGATGCCCTTTCCTCTATCATAAGTCG
CCAAAAGCAAATGGGCCAGGAGATTGGGAATGAACTGGACGAACAGAACGGTGAAGAAACGGGA
ACAGGACACATATGGAGGGAGACCATGGAAAGACACGAGGGAGACACACCATGAAGGGCCTTAG
AAACCAGCCTTCCGATGACAACTTGATCTCTGGCTGCGGTCTCTGGTCTCATGAGAAAAGAAGG
TTGTTTTGGCATGCGGTTTGTAGTAATAGCATCCTTCCCCTATGATTTTCCATACATATCTGCT
AATTTTCTATCAGCATGGTATGAACAGAGGACCATGCTGACATGATAGCCAGCTCCGGTGAGCA
TTTTAAATGGTGGCAGATTGGGTTACCCAGAAGGCTTCTTTCTTGCCTGGGACAACGTGCCATG
AATCTACAAGTAGTTAGGTTGTACCCCGGCAGGCTTCTTATGGGGTAAGTGAGAAGAGCACAAA
AGCGGAGTCAGAACCATAGAAGTGACGACATTAGAGCTTTAACCTAGGGGAAATATTCCATGTA
CTTTTATACCTGGGGGGAAATGCCCCTTTAACCTAGGGGGAAGTAATACCGTGAACTTTACCTA
GGGTGACATGATTTCTTCATTGACCTCTCATTACCCTGTAGCTATCTCAGAGTCTCTGACTCAT
TTCCTTGCCTGGATACCAGCTCCCAAGGGCTTTCCTTTCACAGCAGTCCTTCCTCTCCAGAGAA
CTGTCCAAGGGTGCAGCTGGGAGTAAACCCTGGAGGCTGCAACCCACACAGGGCAGGGCTCAGA
GTAGTGGGGCCCAGCTGCTCCATAGACAACTCTCTGCACACAGGCCCTCATCCTGCCTCACAGC
CTCTTTCTTTGTAGAACATTCTGTGGCTGCCAGTAGCCATTGACTCCAAGGTTGGCGGGTCTCC
AGTGCTCTCTAGTTGGGAAGAAAGAGCTTCTCTCTCTGTAGCTGGTGCGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTTTTCCCTCCA
TTGTGGTTTGTCAGTACAGCCCAGGTCTCGTCCTTAAGCAAATGAGTCTTCTGAAGGACTTGTT
CATTGATAGCACTCCTCTGTTTTCACTGCCACTGTGGGTCCTTTCTCAGAGAAAAAAGATCATC
TCTGCAGCGTGGCTGTGCTCTCTGGAAGGAAGAAGGCACTGGACTCTACTGTCTAGAACTCAAA
GTCATGTTTTTATGAGTTAACAGGAGCTATATAAATTATGTGACCAAAACAGCTGTGTCTCTGG
GGCTTTGATTGAACAGATGTTTCATTTGGTGTCTGTGGAAGCTGTTTACTTGGCTTTCTGTGAG
TGGTAACCCAACTCATCACCTGATGTCTTCCTAGCTGGATTTCCCTAAAATTCAATTAGGGAGA
TGAGGAAAGGTATTCCTGCTCCTTGTAGTCATGGTTTTAGGTACTCGAGGGTGGACAGTCTTTG
TCTATAGGAAGAAGCCAGTTAACAGAGTAGGAGCGAATGGGGGAACAGGAAAGACAGTCTGTCA
TTCCAACAGTTGTCTGACTCTTCCTGGTCATCCAGCAGTTTCTGGTGCTCTGCAGATCTACAGG
CTTAGTGCCCTCCAGACCATCCCGGTTAAGATAAAACTATAAGTCCTAGATGTCCCCAGGCTGG
GCACTTCTATCTGCTTGGCTACAAATTTTCATGACTCTTCTGAATTTGGTACTTTAGAAAAACA
TTCACAGAACTCAGGAAGTGCCCTACTTAGAGAGTTTTATGATAGCAGTTGCCATTCTGGAACA
GGCAAATAGAGAAATGAATGGGGGGAAGTGTCAGGGGGCGGTGTAGAGTCCCCATGCCCTCTCT
ACATGTACCGTGCTCAGTGCTCAGAGCACACCCATGCGTTCCCTGTCCTTGAGGCTGCCAGGAC
CTTGTTGTTGGGTTTTCGCAGAGGCTTCAGTACCTGATTGATCATTGGCCACAGTAGGACTGGC
CTCCTTCTGCACCACTGAAGGTGAAATTGGGCCTGAAACTGCCAGTGCTCTAATCATGCTTAGG
GCTAGTCCTCCATCAAATTATTTAAAGGTCTACTAGGAGTCATCTCATTAGCACAAATCTAAAA
GCATTTTTTTTTTTTACAGATAATAAAAACTACTCTTATCAGGAAATCCCAAGGTTTTTGATGC
TCTTGCTAAGAACCAGGGATTAAGATGAATACTATGCCTTTTTTTTTTTTTTTTTTAAACAGTA
GAGCTAGGAGCCAGTGTCCGAGTCTGTTGAGTATGCAGAAACAATTGCTTGGCGTAGGTGTGGT
ACTTGTCCTCTGACTTTGCTGCTGCTGGCTTTGGTTGGTTCTGGTGATGAGTCGGGACCATTGA
GCCACGGGACTTTGCCTTTTCTGGACTATGACTTCTTCATTTCTTTCTGGGTCTGTATGTTGGT
TTTGACCCTGGCACTGTAGCCAGTTTGCCATGTAACTATGAGGCAAATGTTTTCTAGGAGAACA
GCTTTGAGCATATTAGTCAAAGAAAGAACACTGATGCTCAGCCTTGGGACAGCTGGGGTTGGTG
ACTCACTGGTCTTTCTTTCCCATGGGCTTCCCCACAGTTCCTGTCTGATCTCTAAAAAGGCAGC
CGCAGTCCCTCCAACTAGTAGCTGAACCAAAGAATGCACTTCAGCGCAGCCCAGCAAGCAGGAA
GGATCCAGCAGCATCACAGCTGCGAAGGACAGGCCATCCTGAGCTCCTCACAGAGCAGGCCATT
CTGAGCTCCACACCCGCCGCTCCGCCCCGCACGGAGGTTCCCGTCCTCAGTGCCTTGTGGGAAG
GAAGGCCTGAAGCTGTGTTGGGAGCCTTCACCAAGTTCTGCTTCTCACTATGGCGTTTGTAGCC
CCCATGTCTGTGCAGGTAGCGCTTTTGCAATCCTGAGTGATTGAAAGCTGACAAAGAGTTTGAG
TCATTCCTTACATGTTCTAAGGTCAGACATGGTGACGCGCTGCCCTTTTCTTTCCTCTTTCCTG
CAATGATGCCTGAAGGTTGGAGGTTCTGGCCTGGGTCCTGTCGCAAGGTTTTGTGATGACTAAC
AGTAATTGCCAACCCTGCAGGATCCATGATTACAGAATCTAGAAGATGATCTCTGGACATGTTT
GGGAATTTTTAGATGAAGTTTATTTAGGTGGGAAGACCTAAATACCTGTGACGTTATTCAACAG
GCTGGAGTCGCAGATGAAAAGATATAGCAAGCTGAACACTGGTACTCCTGGCAGTGGGTACAAT
GGGGCCAGCTCCGTTAAGCTCTGGCTGCTTGCTTCCTCCACAATGGTGGCCCGAGAGCCATACT
CAGCCCTGCCCCTTTAATTTGTTTCTTATAAGGTATTTGTGGTAGCAATGGCACAGTCGCTAAC
AGATCTTAGCCTTCTCTTAGTGGCCCAGCCTTGGGGAAGTCAACAAACACC

hide sequence

RefSeq Acc Id:

XM_039086722 ⟹ XP_038942650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,657 - 53,393,912 (+)	NCBI
mRatBN7.2	10	52,655,748 - 52,894,994 (+)	NCBI

RefSeq Acc Id:

XM_039086723 ⟹ XP_038942651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,639 - 53,393,912 (+)	NCBI
mRatBN7.2	10	52,655,742 - 52,894,994 (+)	NCBI

RefSeq Acc Id:

XM_063269743 ⟹ XP_063125813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,572 - 53,309,795 (+)	NCBI

RefSeq Acc Id:

XM_063269744 ⟹ XP_063125814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,579 - 53,358,001 (+)	NCBI

RefSeq Acc Id:

XM_063269745 ⟹ XP_063125815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,173,118 - 53,309,807 (+)	NCBI

RefSeq Acc Id:

XM_063269746 ⟹ XP_063125816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,680 - 53,309,799 (+)	NCBI

RefSeq Acc Id:

XM_063269747 ⟹ XP_063125817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,670 - 53,309,807 (+)	NCBI

RefSeq Acc Id:

XM_063269748 ⟹ XP_063125818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,157,883 - 53,309,807 (+)	NCBI

RefSeq Acc Id:

XM_063269749 ⟹ XP_063125819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,173,215 - 53,393,912 (+)	NCBI

RefSeq Acc Id:

XM_063269750 ⟹ XP_063125820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	53,154,670 - 53,363,670 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_113844	(Get FASTA)	NCBI Sequence Viewer
	XP_017452984	(Get FASTA)	NCBI Sequence Viewer
	XP_038942650	(Get FASTA)	NCBI Sequence Viewer
	XP_038942651	(Get FASTA)	NCBI Sequence Viewer
	XP_063125813	(Get FASTA)	NCBI Sequence Viewer
	XP_063125814	(Get FASTA)	NCBI Sequence Viewer
	XP_063125815	(Get FASTA)	NCBI Sequence Viewer
	XP_063125816	(Get FASTA)	NCBI Sequence Viewer
	XP_063125817	(Get FASTA)	NCBI Sequence Viewer
	XP_063125818	(Get FASTA)	NCBI Sequence Viewer
	XP_063125819	(Get FASTA)	NCBI Sequence Viewer
	XP_063125820	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC70903	(Get FASTA)	NCBI Sequence Viewer
	EDM04801	(Get FASTA)	NCBI Sequence Viewer
	EDM04802	(Get FASTA)	NCBI Sequence Viewer
	EDM04803	(Get FASTA)	NCBI Sequence Viewer
	EDM04804	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000105192
	ENSRNOP00000107626
	ENSRNOP00000112058
GenBank Protein	Q9Z2Q7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_113844 ⟸ NM_031656

- UniProtKB:

Q9Z2Q7 (UniProtKB/Swiss-Prot), A0A8I5ZP38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLR
AVSTRQITQLEGDRRQNLLDDLVTRERLLLASFKNEGSEPDLIRSSLMSEEAKRGTPNPWLCEE
PEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVEN
TDEKLRTEARRVTLVDRKSASCGMIMVILLLLVAIVVVAVWPTN

hide sequence

RefSeq Acc Id:

XP_017452984 ⟸ XM_017597495

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSRAGRRSQLLRAGSVPAAGGDCTMAPDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKL
TLTIRTLLKNLKVKIDLLKDLLLRAVSTRQITQLEGDRRQNLLDDLVTRERLLLASFKNEGSEP
DLIRSSLMSEEAKRGTPNPWLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQM
GQEIGNELDEQNGEETGTGHIWRETMERHEGDTP

hide sequence

Ensembl Acc Id:

ENSRNOP00000005204 ⟸ ENSRNOT00000005204

RefSeq Acc Id:	XP_038942651 ⟸ XM_039086723
- Peptide Label:	isoform X7
- UniProtKB:	A6HFJ9 (UniProtKB/TrEMBL), A6K851 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942650 ⟸ XM_039086722
- Peptide Label:	isoform X7
- UniProtKB:	A6HFJ9 (UniProtKB/TrEMBL), A6K851 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000079694 ⟸ ENSRNOT00000116831

RefSeq Acc Id:	XP_063125813 ⟸ XM_063269743
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063125814 ⟸ XM_063269744
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZP38 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125820 ⟸ XM_063269750
- Peptide Label:	isoform X8
- UniProtKB:	A6K851 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125817 ⟸ XM_063269747
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063125816 ⟸ XM_063269746
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063125818 ⟸ XM_063269748
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063125815 ⟸ XM_063269745
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063125819 ⟸ XM_063269749
- Peptide Label:	isoform X6
- UniProtKB:	A6K851 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098774 ⟸ ENSRNOT00000148583

Ensembl Acc Id:

ENSRNOP00000112080 ⟸ ENSRNOT00000132933

Ensembl Acc Id:

ENSRNOP00000107626 ⟸ ENSRNOT00000137475

Ensembl Acc Id:

ENSRNOP00000105192 ⟸ ENSRNOT00000170998

Ensembl Acc Id:

ENSRNOP00000112058 ⟸ ENSRNOT00000124616

Protein Domains

t-SNARE coiled-coil homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z2Q7-F1-model_v2	AlphaFold	Q9Z2Q7	1-236	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697296

Promoter ID:

EPDNEW_R7819

Type:

multiple initiation site

Name:

Stx8_1

Description:

syntaxin 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	54,512,985 - 54,513,045	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61917	AgrOrtholog
BioCyc Gene	G2FUF-24638	BioCyc
Ensembl Genes	ENSRNOG00000003849	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000124616	ENTREZGENE
	ENSRNOT00000137475	ENTREZGENE
	ENSRNOT00000170998	ENTREZGENE
Gene3D-CATH	1.20.5.110	UniProtKB/Swiss-Prot
InterPro	Syntaxin	UniProtKB/Swiss-Prot
	Syntaxin-8_SNARE	UniProtKB/Swiss-Prot
	T_SNARE_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:59074	UniProtKB/Swiss-Prot
NCBI Gene	59074	ENTREZGENE
PANTHER	PTHR19957	UniProtKB/Swiss-Prot
	SYNTAXIN-8	UniProtKB/Swiss-Prot
Pfam	SNARE	UniProtKB/Swiss-Prot
PhenoGen	Stx8	PhenoGen
PROSITE	T_SNARE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003849	RatGTEx
SMART	t_SNARE	UniProtKB/Swiss-Prot
Superfamily-SCOP	SNARE fusion complex	UniProtKB/Swiss-Prot
TIGR	TC230479
UniProt	A0A8I5ZP38	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q1F1_RAT	UniProtKB/TrEMBL
	A0ABK0L849_RAT	UniProtKB/TrEMBL
	A0ABK0LHZ1_RAT	UniProtKB/TrEMBL
	A0ABK0LMA2_RAT	UniProtKB/TrEMBL
	A0ABK0LRE8_RAT	UniProtKB/TrEMBL
	A0ABK0M8K9_RAT	UniProtKB/TrEMBL
	A6HFJ6_RAT	UniProtKB/TrEMBL
	A6HFJ7_RAT	UniProtKB/TrEMBL
	A6HFJ8_RAT	UniProtKB/TrEMBL
	A6HFJ9	ENTREZGENE, UniProtKB/TrEMBL
	A6K851	ENTREZGENE, UniProtKB/TrEMBL
	Q9Z2Q7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Stx8	syntaxin 8			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_process	required for the formation of protein complexes that induce membrane fusion	634188
gene_product	member of the SNARE family of proteins	634188

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar