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Gene: Dpf1 (double PHD fingers 1) Rattus norvegicus

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Symbol:

Dpf1

Name:

double PHD fingers 1

RGD ID:

61868

Description:

Predicted to enable sequence-specific double-stranded DNA binding activity. Involved in nervous system development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nBAF complex. Orthologous to human DPF1 (double PHD fingers 1); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BAF45B; BRG1-associated factor 45B; D4, zinc and double PHD fingers family 1; Neud4; neuro-d4; neuronal d4 domain family member; zinc finger protein neuro-d4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DPF1 (double PHD fingers 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Dpf1 (double PHD fingers 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DPF1 (double PHD fingers 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dpf1 (D4, zinc and double PHD fingers family 1)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	dpff-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	d4	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,729,683 - 93,743,425 (+)	NCBI		GRCr8
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,602,336 - 84,615,950 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,017,817 - 90,027,416 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	98,477,595 - 98,487,176 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,773,664 - 91,783,261 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	87,248,448 - 87,258,070 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	84,522,204 - 84,531,762 (+)	NCBI
Celera	1	78,992,981 - 79,002,564 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (EXP)

calcitriol (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

choline (ISO)

clozapine (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dioxygen (ISO)

folic acid (ISO)

fulvestrant (ISO)

glycerol 2-phosphate (ISO)

haloperidol (ISO)

hydrazine (ISO)

inulin (ISO)

L-ascorbic acid (ISO)

L-methionine (ISO)

methapyrilene (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

nervous system development (IBA,IDA,ISO,ISS)

Cellular Component

cytoplasm (IEA)

nBAF complex (IBA,ISO,ISS)

nucleus (IEA)

Molecular Function

protein binding (ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Differential splicing creates a diversity of transcripts from a neurospecific developmentally regulated gene encoding a protein with new zinc-finger motifs.	Buchman VL, etal., Nucleic Acids Res 1992 Nov 11;20(21):5579-85.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ATP-dependent chromatin remodeling: genetics, genomics and mechanisms.	Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	The spectrum of SWI/SNF mutations, ubiquitous in human cancers.	Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.

Additional References at PubMed

PMID:12477932	PMID:17640523	PMID:23785148

Genomics

Comparative Map Data

Dpf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,729,683 - 93,743,425 (+)	NCBI		GRCr8
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,602,336 - 84,615,950 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,017,817 - 90,027,416 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	98,477,595 - 98,487,176 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,773,664 - 91,783,261 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	87,248,448 - 87,258,070 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	84,522,204 - 84,531,762 (+)	NCBI
Celera	1	78,992,981 - 79,002,564 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

DPF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	38,211,006 - 38,229,695 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	38,211,006 - 38,229,714 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	38,701,646 - 38,720,335 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	43,394,187 - 43,406,628 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	35,503,879 - 35,522,555 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,150,952 - 35,163,719 (-)	NCBI		HuRef
CHM1_1	19	38,701,990 - 38,720,649 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	41,013,164 - 41,031,861 (-)	NCBI		T2T-CHM13v2.0

Dpf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	29,003,366 - 29,017,017 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	29,003,376 - 29,017,668 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	29,303,952 - 29,317,592 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	29,303,951 - 29,318,243 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	30,089,024 - 30,102,605 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	29,012,765 - 29,026,346 (+)	NCBI		MGSCv36	mm8
Celera	7	23,874,277 - 23,887,947 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.94	NCBI

Dpf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	1,195,146 - 1,211,311 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	1,195,152 - 1,209,774 (+)	NCBI	ChiLan1.0	ChiLan1.0

DPF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	44,497,664 - 44,516,778 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	46,368,445 - 46,387,559 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	35,301,009 - 35,320,126 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	43,875,879 - 43,888,611 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	43,875,879 - 43,889,021 (-)	Ensembl	panpan1.1		panPan2

DPF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	114,753,368 - 114,763,965 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	114,757,864 - 114,765,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	114,156,599 - 114,169,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	115,355,095 - 115,368,417 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	115,341,775 - 115,368,228 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	114,927,843 - 114,941,151 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	114,545,960 - 114,559,268 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	115,595,566 - 115,608,875 (+)	NCBI		UU_Cfam_GSD_1.0

Dpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,440 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936801	1,004,832 - 1,017,924 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936801	1,004,841 - 1,013,784 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DPF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,142,702 - 47,155,346 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,142,006 - 47,155,340 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	42,620,257 - 42,627,472 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DPF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	32,855,371 - 32,873,889 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	32,856,436 - 32,868,067 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	10,795,683 - 10,815,054 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dpf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	11,700,139 - 11,714,979 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dpf1
58 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	290
Count of miRNA genes:	105
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000028091, ENSRNOT00000046435
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	83547917	128547917	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	78430754	91209302	Rat

Markers in Region

BF397080

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	84,610,167 - 84,610,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	87,252,290 - 87,252,435	NCBI	Rnor6.0
Rnor_5.0	1	88,431,340 - 88,431,485	UniSTS	Rnor5.0
RGSC_v3.4	1	84,447,874 - 84,448,021	UniSTS	RGSC3.4
Celera	1	78,996,782 - 78,996,929	UniSTS
RH 3.4 Map	1	844.1	UniSTS
Cytogenetic Map	1	q21	UniSTS

Dpf1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	84,614,858 - 84,615,897 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	87,256,979 - 87,258,017	NCBI	Rnor6.0
Rnor_5.0	1	88,436,029 - 88,437,067	UniSTS	Rnor5.0
Celera	1	79,001,473 - 79,002,511	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	86	85	54	25	54	6	212	97	93	44	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC159415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO396551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X66022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028091 ⟹ ENSRNOP00000028091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	84,606,367 - 84,615,950 (+)	Ensembl
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098222 ⟹ ENSRNOP00000092298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	84,606,392 - 84,615,945 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108923 ⟹ ENSRNOP00000087397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	84,602,336 - 84,615,945 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111007 ⟹ ENSRNOP00000086882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	84,607,523 - 84,615,945 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118174 ⟹ ENSRNOP00000089460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	84,606,367 - 84,615,950 (+)	Ensembl

RefSeq Acc Id:

NM_001105729 ⟹ NP_001099199

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,842 - 93,743,425 (+)	NCBI
mRatBN7.2	1	84,606,367 - 84,615,950 (+)	NCBI
Rnor_6.0	1	87,248,489 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	RGD
Celera	1	78,992,981 - 79,002,564 (+)	NCBI

Sequence:

show sequence

GGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCCGGCAGGGACCTGCTGGGGGCAGGACC
CGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGCCTTGGCGAGGACTTCTACCGGGA
GGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCC
TTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACC
GCGGGCCTGGTTTGGCCCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACG
GAGACTCAACATCCTGGAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGATTGTGAGGCA
CCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGA
CTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTT
GCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAAC
AGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGG
AGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCT
TAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCAC
GCCCTGCCTTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCG
AGGCACAGAGGAAACACACAGCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTG
TGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGTGCGGAC
TGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCGTGCGGA
CCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGA
CCAGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATG
GCGGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCT
CCGCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCC
TCGGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGC
CCAGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCC
AGCAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCC
TCAAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGA
AAAAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAAT
TAATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACC
TGACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAAC
TCCCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACA
CTGCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCT
GCCCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCT
GGGGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCAC
AGATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTT
CTCCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCT
AGCCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGG
GTTTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCC
CCCAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTA
ACTTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_006228678 ⟹ XP_006228740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,789 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,606,307 - 84,615,954 (+)	NCBI
Rnor_6.0	1	87,248,465 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

CCCCCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCCGG
CAGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAG
CCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGT
GCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAACTGCT
ACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCAGGACAGATCTACACTTACCC
CGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGCCCTGC
GAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCC
TTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCAT
TATGGACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAG
GAAGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCTCCGGA
AACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAA
GAGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAG
GGGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAAAAACAACCATAAACAGTTTT
ACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAAACACACAGCCAAGAAAGCACCAGATGG
CACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCT
GAGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGG
TGAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCT
GTGTGGCACCTCGGAGAATGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTGCTG
TTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCC
CGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCTTACAT
CACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGCCTCTT
GGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGG
GCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCC
CTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAAGCCAT
ACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAGCCTTT
TTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATATATAC
AAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACTTTACC
AGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCATCTGA
GGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCCCCCTC
CCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCCTCCTT
TGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCC
GGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATTGCAAT
GGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTC
AACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCATTTTG
GGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAA
AGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAG
GAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTGTTCTG
TGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_039088375 ⟹ XP_038944303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,683 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088377 ⟹ XP_038944305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088383 ⟹ XP_038944311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,820 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,605,643 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088390 ⟹ XP_038944318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,789 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,605,645 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088394 ⟹ XP_038944322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,683 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088397 ⟹ XP_038944325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088402 ⟹ XP_038944330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088407 ⟹ XP_038944335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,213 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088416 ⟹ XP_038944344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,734,163 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,606,677 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088421 ⟹ XP_038944349

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088425 ⟹ XP_038944353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,683 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088431 ⟹ XP_038944359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,734,133 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,606,658 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088436 ⟹ XP_038944364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,734,837 - 93,743,424 (+)	NCBI
mRatBN7.2	1	84,607,361 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_063271900 ⟹ XP_063127970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271901 ⟹ XP_063127971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271903 ⟹ XP_063127973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,789 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271905 ⟹ XP_063127975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,789 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271908 ⟹ XP_063127978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271913 ⟹ XP_063127983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,789 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271916 ⟹ XP_063127986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,729,684 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271917 ⟹ XP_063127987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,822 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271920 ⟹ XP_063127990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,823 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271921 ⟹ XP_063127991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,733,789 - 93,743,424 (+)	NCBI

RefSeq Acc Id:

XM_063271924 ⟹ XP_063127994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	93,734,170 - 93,743,424 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099199	(Get FASTA)	NCBI Sequence Viewer
	XP_006228740	(Get FASTA)	NCBI Sequence Viewer
	XP_038944303	(Get FASTA)	NCBI Sequence Viewer
	XP_038944305	(Get FASTA)	NCBI Sequence Viewer
	XP_038944311	(Get FASTA)	NCBI Sequence Viewer
	XP_038944318	(Get FASTA)	NCBI Sequence Viewer
	XP_038944322	(Get FASTA)	NCBI Sequence Viewer
	XP_038944325	(Get FASTA)	NCBI Sequence Viewer
	XP_038944330	(Get FASTA)	NCBI Sequence Viewer
	XP_038944335	(Get FASTA)	NCBI Sequence Viewer
	XP_038944344	(Get FASTA)	NCBI Sequence Viewer
	XP_038944349	(Get FASTA)	NCBI Sequence Viewer
	XP_038944353	(Get FASTA)	NCBI Sequence Viewer
	XP_038944359	(Get FASTA)	NCBI Sequence Viewer
	XP_038944364	(Get FASTA)	NCBI Sequence Viewer
	XP_063127970	(Get FASTA)	NCBI Sequence Viewer
	XP_063127971	(Get FASTA)	NCBI Sequence Viewer
	XP_063127973	(Get FASTA)	NCBI Sequence Viewer
	XP_063127975	(Get FASTA)	NCBI Sequence Viewer
	XP_063127978	(Get FASTA)	NCBI Sequence Viewer
	XP_063127983	(Get FASTA)	NCBI Sequence Viewer
	XP_063127986	(Get FASTA)	NCBI Sequence Viewer
	XP_063127987	(Get FASTA)	NCBI Sequence Viewer
	XP_063127990	(Get FASTA)	NCBI Sequence Viewer
	XP_063127991	(Get FASTA)	NCBI Sequence Viewer
	XP_063127994	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI59416	(Get FASTA)	NCBI Sequence Viewer
	EDM07826	(Get FASTA)	NCBI Sequence Viewer
	EDM07827	(Get FASTA)	NCBI Sequence Viewer
	EDM07828	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028091.6
	ENSRNOP00000086882.1
	ENSRNOP00000087397.1
	ENSRNOP00000089460.1
	ENSRNOP00000092298.1
	ENSRNOP00055047648
	ENSRNOP00060037576
	ENSRNOP00065048193
GenBank Protein	P56163	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001099199 ⟸ NM_001105729

- UniProtKB:

P56163 (UniProtKB/Swiss-Prot), A0A0H2UHS4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPG
LAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEK
KVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRD
KPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQR
KHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRW
QCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYI
TLT

hide sequence

RefSeq Acc Id:	XP_006228740 ⟸ XM_006228678
- Peptide Label:	isoform X9
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLR LPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDC EAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRR KNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTE RHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISC ADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCD RGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT hide sequence

Ensembl Acc Id:

ENSRNOP00000028091 ⟸ ENSRNOT00000028091

RefSeq Acc Id:	XP_038944303 ⟸ XM_039088375
- Peptide Label:	isoform X1
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944305 ⟸ XM_039088377
- Peptide Label:	isoform X2
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944322 ⟸ XM_039088394
- Peptide Label:	isoform X5
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944330 ⟸ XM_039088402
- Peptide Label:	isoform X7
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944325 ⟸ XM_039088397
- Peptide Label:	isoform X6
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944349 ⟸ XM_039088421
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944353 ⟸ XM_039088425
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944335 ⟸ XM_039088407
- Peptide Label:	isoform X8
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944311 ⟸ XM_039088383
- Peptide Label:	isoform X3
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944318 ⟸ XM_039088390
- Peptide Label:	isoform X4
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038944359 ⟸ XM_039088431
- Peptide Label:	isoform X24
- UniProtKB:	B0K016 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944344 ⟸ XM_039088416
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6GFF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944364 ⟸ XM_039088436
- Peptide Label:	isoform X24
- UniProtKB:	B0K016 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092298 ⟸ ENSRNOT00000098222

Ensembl Acc Id:

ENSRNOP00000087397 ⟸ ENSRNOT00000108923

Ensembl Acc Id:

ENSRNOP00000086882 ⟸ ENSRNOT00000111007

Ensembl Acc Id:

ENSRNOP00000089460 ⟸ ENSRNOT00000118174

RefSeq Acc Id:	XP_063127970 ⟸ XM_063271900
- Peptide Label:	isoform X10
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127971 ⟸ XM_063271901
- Peptide Label:	isoform X11
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127978 ⟸ XM_063271908
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127986 ⟸ XM_063271916
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127973 ⟸ XM_063271903
- Peptide Label:	isoform X13
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127975 ⟸ XM_063271905
- Peptide Label:	isoform X15
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127983 ⟸ XM_063271913
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127991 ⟸ XM_063271921
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127987 ⟸ XM_063271917
- Peptide Label:	isoform X20
- UniProtKB:	P56163 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127990 ⟸ XM_063271920
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I6AHA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127994 ⟸ XM_063271924
- Peptide Label:	isoform X23
- UniProtKB:	A0A8I6GFF6 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type PHD-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P56163-F1-model_v2	AlphaFold	P56163	1-397	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61868	AgrOrtholog
BioCyc Gene	G2FUF-60182	BioCyc
Ensembl Genes	ENSRNOG00000020687	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00055033396	UniProtKB/Swiss-Prot
	ENSRNOG00060026019	UniProtKB/Swiss-Prot
	ENSRNOG00065034072	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000028091.9	UniProtKB/TrEMBL
	ENSRNOT00000098222.1	UniProtKB/TrEMBL
	ENSRNOT00000108923.1	UniProtKB/TrEMBL
	ENSRNOT00000111007.1	UniProtKB/TrEMBL
	ENSRNOT00000118174.1	UniProtKB/TrEMBL
	ENSRNOT00055057762	UniProtKB/Swiss-Prot
	ENSRNOT00060045268	UniProtKB/Swiss-Prot
	ENSRNOT00065058544	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8368092	IMAGE-MGC_LOAD
InterPro	Requiem/DPF_N_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:50545	UniProtKB/TrEMBL
MGC_CLONE	MGC:188698	IMAGE-MGC_LOAD
NCBI Gene	50545	ENTREZGENE
PANTHER	HL01030P-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC FINGER PROTEIN UBI-D4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Requiem_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Dpf1	PhenoGen
PROSITE	ZF_PHD_1	UniProtKB/Swiss-Prot
	ZF_PHD_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020687	RatGTEx
	ENSRNOG00055033396	RatGTEx
	ENSRNOG00060026019	RatGTEx
	ENSRNOG00065034072	RatGTEx
SMART	PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57903	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHS4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AHA1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GFF6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GFY7_RAT	UniProtKB/TrEMBL
	A0A8I6GHB2_RAT	UniProtKB/TrEMBL
	A6J9Q6_RAT	UniProtKB/TrEMBL
	B0K016	ENTREZGENE, UniProtKB/TrEMBL
	DPF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Dpf1	double PHD fingers 1	Dpf1	D4, zinc and double PHD fingers family 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-11	Dpf1	D4, zinc and double PHD fingers family 1	Neud4	neuronal d4 domain family member	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Neud4	neuronal d4 domain family member			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a nuclear localization signal, a Kruppel-type zinc-finger and a cysteine/histidine-rich motif	61670
gene_expression	transcripts are expressed in neuronal cell bodies	61670

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations