LOC120093118 (uncharacterized LOC120093118) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC120093118 (uncharacterized LOC120093118) Rattus norvegicus
Analyze
Symbol: LOC120093118 (Ensembl: AC117869.1)
Name: uncharacterized LOC120093118 (Ensembl:ribosomal protein S16)
RGD ID: 41291436
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic ribosome (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small ribosomal subunit protein uS9-like; uncharacterized protein LOC120093118
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88126,336,358 - 126,503,737 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1956,922,246 - 56,923,020 (+)EnsemblGRCr8
mRatBN7.28117,458,385 - 117,463,193 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map8q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14643017  


Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8122879213126360737Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 8 25 1 32 18 9 23 7 28 12 12

Sequence


RefSeq Acc Id: XM_063266482   ⟹   XP_063122552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,336,358 - 126,387,915 (-)NCBI
RefSeq Acc Id: XM_063266483   ⟹   XP_063122553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,336,358 - 126,503,732 (-)NCBI
RefSeq Acc Id: XR_010054513
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,336,358 - 126,503,737 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063122552 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122553 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000077462.1
RefSeq Acc Id: XP_063122553   ⟸   XM_063266483
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122552   ⟸   XM_063266482
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YCD9 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28836 BioCyc
Ensembl Genes ENSRNOG00000031439 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041965.7 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_Su5_D2-typ_SF UniProtKB/TrEMBL
  Ribosomal_uS9 UniProtKB/TrEMBL
  Ribosomal_uS9_CS UniProtKB/TrEMBL
  Ribsml_uS5_D2-typ_fold_subgr UniProtKB/TrEMBL
NCBI Gene LOC120093118 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN S9 UniProtKB/TrEMBL
  SMALL RIBOSOMAL SUBUNIT PROTEIN US9 UniProtKB/TrEMBL
Pfam Ribosomal_S9 UniProtKB/TrEMBL
PhenoGen LOC120093118 PhenoGen
PROSITE RIBOSOMAL_S9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031439 RatGTEx
Superfamily-SCOP Ribosomal protein S5 domain 2-like UniProtKB/TrEMBL
UniProt A0A8I5YCD9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120093118  uncharacterized LOC120093118      Symbol and Name status set to provisional 70820 PROVISIONAL