LOC120098629 (60S ribosomal protein L29-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC120098629 (60S ribosomal protein L29-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120098629 (Ensembl: AABR07043813.1)
Name: 60S ribosomal protein L29-like
RGD ID: 41160097
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL29-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,378,281 - 56,380,936 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1956,380,085 - 56,380,702 (+)EnsemblGRCr8
mRatBN7.21939,470,788 - 39,471,394 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,470,811 - 39,471,281 (+)EnsemblmRatBN7.2
Cytogenetic Map19q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120098629
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
7 5 14 30 14 9 9 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063278664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000049230   ⟹   ENSRNOP00000081658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1956,380,085 - 56,380,702 (+)Ensembl
mRatBN7.2 Ensembl1939,470,811 - 39,471,281 (+)Ensembl
RefSeq Acc Id: XM_063278664   ⟹   XP_063134734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81956,378,281 - 56,380,936 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063134734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041744.5
  ENSRNOP00000081658
  ENSRNOP00000081658.1
Ensembl Acc Id: ENSRNOP00000081658   ⟸   ENSRNOT00000049230
RefSeq Acc Id: XP_063134734   ⟸   XM_063278664
- UniProtKB: A0A8I5ZTF4 (UniProtKB/TrEMBL),   F1LYI5 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41160097 AgrOrtholog
BioCyc Gene G2FUF-5649 BioCyc
Ensembl Genes ENSRNOG00000033224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000037172 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049230 ENTREZGENE
  ENSRNOT00000049230.5 UniProtKB/TrEMBL
  ENSRNOT00000050117.6 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/TrEMBL
InterPro Ribosomal_L29e UniProtKB/TrEMBL
NCBI Gene LOC120098629 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/TrEMBL
PhenoGen LOC120098629 PhenoGen
RatGTEx ENSRNOG00000033224 RatGTEx
  ENSRNOG00000037172 RatGTEx
UniProt A0A8I5ZTF4 ENTREZGENE, UniProtKB/TrEMBL
  F1LYI5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098629  60S ribosomal protein L29-like      Symbol and Name status set to provisional 70820 PROVISIONAL