Snora31 (small nucleolar RNA, H/ACA box 31) - Rat Genome Database

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Gene: Snora31 (small nucleolar RNA, H/ACA box 31) Rattus norvegicus
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Symbol: Snora31
Name: small nucleolar RNA, H/ACA box 31
RGD ID: 41070333
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus. Human ortholog(s) of this gene implicated in brain disease. Orthologous to human SNORA31 (small nucleolar RNA, H/ACA box 31); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); aldehydo-D-glucose (ortholog); benzene-1,2,4-triol (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07018438.2; LOC120097216; small nucleolar RNA SNORA31
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,568,564 - 57,568,693 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1557,568,564 - 57,568,693 (+)EnsemblGRCr8
mRatBN7.21551,159,220 - 51,159,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1551,159,220 - 51,159,349 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1557,894,100 - 57,894,229 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snora31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,568,564 - 57,568,693 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1557,568,564 - 57,568,693 (+)EnsemblGRCr8
mRatBN7.21551,159,220 - 51,159,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1551,159,220 - 51,159,349 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1557,894,100 - 57,894,229 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q11NCBI
SNORA31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381345,337,480 - 45,337,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1345,337,480 - 45,337,609 (-)Ensemblhg38GRCh38
GRCh371345,911,615 - 45,911,744 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361344,809,615 - 44,809,744 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1326,967,743 - 26,967,872 (-)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1326,712,756 - 26,712,885 (-)NCBIHuRef
CHM1_11345,879,189 - 45,879,318 (-)NCBICHM1_1
T2T-CHM13v2.01344,557,727 - 44,557,856 (-)NCBIT2T-CHM13v2.0
Snora31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,085,363 - 76,085,474 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,085,345 - 76,085,474 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381475,847,923 - 75,848,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,847,905 - 75,848,034 (+)Ensemblmm10GRCm38
MGSCv371476,247,730 - 76,247,841 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera1473,349,262 - 73,349,373 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.29NCBI
LOC119865294
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha225,703,833 - 5,703,962 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0225,832,485 - 5,832,614 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1225,614,510 - 5,614,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0225,677,463 - 5,677,592 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0225,683,144 - 5,683,273 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0

Variants

.
Variants in Snora31
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155720389580107161Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
18 7 18 7 1 18 11 1 9 9

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1557,568,564 - 57,568,693 (+)Ensembl
mRatBN7.2 Ensembl1551,159,220 - 51,159,349 (+)Ensembl
RefSeq Acc Id: XR_005494449
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81557,568,564 - 57,568,693 (+)NCBI
mRatBN7.21551,159,220 - 51,159,349 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41070333 AgrOrtholog
BioCyc Gene G2FUF-13104 BioCyc
Ensembl Genes ENSRNOG00000055553 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000080370 ENTREZGENE
NCBI Gene LOC120097216 ENTREZGENE
PhenoGen Snora31 PhenoGen
RatGTEx ENSRNOG00000055553 RatGTEx
RNAcentral URS000072ED0F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snora31  small nucleolar RNA, H/ACA box 31  LOC120097216  small nucleolar RNA SNORA31  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120097216  small nucleolar RNA SNORA31  Snora31  small nucleolar RNA, H/ACA box 31  Data merged from RGD:15009546 737654 PROVISIONAL
2021-09-02 Snora31  small nucleolar RNA, H/ACA box 31  AABR07018438.2    Symbol and/or name change 19259462 PROVISIONAL
2021-08-09 AABR07018438.2    Snora31  small nucleolar RNA, H/ACA box 31  Symbol and/or name change 19259462 PROVISIONAL
2021-05-06 Snora31  small nucleolar RNA, H/ACA box 31  AABR07018438.2    Symbol and/or name change 19259462 PROVISIONAL
2021-01-27 LOC120097216  small nucleolar RNA SNORA31      Symbol and Name status set to provisional 70820 PROVISIONAL
2020-02-07 AABR07018438.2    Snora31  small nucleolar RNA, H/ACA box 31  Symbol and/or name change 19259462 PROVISIONAL