LOC120093238 (60S ribosomal protein L35-like) - Rat Genome Database

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Gene: LOC120093238 (60S ribosomal protein L35-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120093238
Name: 60S ribosomal protein L35-like
RGD ID: 40979901
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07063704.1; large ribosomal subunit protein uL29-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,152,341 - 46,153,099 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl646,152,531 - 46,152,902 (+)EnsemblGRCr8
mRatBN7.2640,423,594 - 40,425,165 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,423,832 - 40,424,203 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl642,947,334 - 42,947,705 (+)NCBIrn6Rnor6.0
Cytogenetic Map6q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120093238
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
5 2 5 24 5 2 14 4 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039078184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000041376   ⟹   ENSRNOP00000048311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl646,152,531 - 46,152,902 (+)Ensembl
mRatBN7.2 Ensembl640,423,832 - 40,424,203 (+)Ensembl
RefSeq Acc Id: XM_039078184   ⟹   XP_038934112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,152,341 - 46,153,099 (+)NCBI
mRatBN7.2640,423,594 - 40,425,165 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038934112 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019162.7
  ENSRNOP00000048311
  ENSRNOP00000048311.2
RefSeq Acc Id: XP_038934112   ⟸   XM_039078184
- UniProtKB: D3ZB50 (UniProtKB/TrEMBL),   A0A8L2UJE8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000048311   ⟸   ENSRNOT00000041376

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZB50-F1-model_v2 AlphaFold D3ZB50 1-123 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:40979901 AgrOrtholog
BioCyc Gene G2FUF-38046 BioCyc
Ensembl Genes ENSRNOG00000014272 UniProtKB/TrEMBL
  ENSRNOG00000032523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019162.8 UniProtKB/TrEMBL
  ENSRNOT00000041376 ENTREZGENE
  ENSRNOT00000041376.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.310 UniProtKB/TrEMBL
  6.10.250.3450 UniProtKB/TrEMBL
InterPro Ribosomal_L29/L35 UniProtKB/TrEMBL
  Ribosomal_L29/L35_sf UniProtKB/TrEMBL
  Ribosomal_L29_CS UniProtKB/TrEMBL
  RL35 UniProtKB/TrEMBL
NCBI Gene LOC120093238 ENTREZGENE
PANTHER LARGE RIBOSOMAL SUBUNIT PROTEIN UL29 UniProtKB/TrEMBL
  PTHR45722 UniProtKB/TrEMBL
Pfam Ribosomal_L29 UniProtKB/TrEMBL
PhenoGen LOC120093238 PhenoGen
PROSITE RIBOSOMAL_L29 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014272 RatGTEx
  ENSRNOG00000032523 RatGTEx
Superfamily-SCOP SSF46561 UniProtKB/TrEMBL
UniProt A0A8L2UJE8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZB50 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120093238  60S ribosomal protein L35-like  AABR07063704.1    Data merged from RGD:15003959 737654 PROVISIONAL
2021-01-26 LOC120093238  60S ribosomal protein L35-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07063704.1        Symbol and Name status set to provisional 45752 PROVISIONAL