LOC120093247 (60S ribosomal protein L29-like) - Rat Genome Database

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Gene: LOC120093247 (60S ribosomal protein L29-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120093247
Name: 60S ribosomal protein L29-like
RGD ID: 40972876
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07064000.1; large ribosomal subunit protein eL29-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8662,615,535 - 63,229,431 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl662,465,093 - 62,616,116 (+)EnsemblGRCr8
mRatBN7.2656,888,372 - 56,888,994 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl656,888,458 - 56,888,928 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1815,671,460 - 15,671,903 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl659,757,397 - 59,757,964 (+)NCBIrn6Rnor6.0
Cytogenetic Map6q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120093247
4399 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 13 24 50 27 2 17 16 20 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039078188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047001   ⟹   ENSRNOP00000064904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl662,465,093 - 62,616,116 (+)Ensembl
mRatBN7.2 Ensembl656,888,458 - 56,888,928 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000049689   ⟹   ENSRNOP00000044874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1815,671,460 - 15,671,903 (+)Ensembl
RefSeq Acc Id: XM_039078188   ⟹   XP_038934116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8662,615,535 - 63,229,431 (+)NCBI
mRatBN7.2656,888,372 - 56,888,994 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038934116 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064904.2
RefSeq Acc Id: XP_038934116   ⟸   XM_039078188
- UniProtKB: M0R665 (UniProtKB/TrEMBL),   D3ZIV1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000064904   ⟸   ENSRNOT00000047001
Ensembl Acc Id: ENSRNOP00000044874   ⟸   ENSRNOT00000049689

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R665-F1-model_v2 AlphaFold M0R665 1-156 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:40972876 AgrOrtholog
BioCyc Gene G2FUF-37751 BioCyc
Ensembl Genes ENSRNOG00000029594 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000030439 Ensembl
Ensembl Transcript ENSRNOT00000047001.5 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/TrEMBL
InterPro Ribosomal_L29e UniProtKB/TrEMBL
NCBI Gene LOC120093247 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/TrEMBL
PhenoGen LOC120093247 PhenoGen
RatGTEx ENSRNOG00000029594 RatGTEx
  ENSRNOG00000030439 RatGTEx
UniProt D3ZIV1 ENTREZGENE
  M0R665 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120093247  60S ribosomal protein L29-like  AABR07064000.1    Data merged from RGD:15003761 737654 PROVISIONAL
2021-01-26 LOC120093247  60S ribosomal protein L29-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07064000.1        Symbol and Name status set to provisional 45752 PROVISIONAL