Smokl7 (sperm motility kinase like 7) - Rat Genome Database

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Gene: Smokl7 (sperm motility kinase like 7) Rattus norvegicus
Analyze
Symbol: Smokl7
Name: sperm motility kinase like 7
RGD ID: 40938575
Description: Predicted to enable ATP binding activity.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC120093780; putative sperm motility kinase W
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8717,429,275 - 17,449,026 (+)NCBIGRCr8
mRatBN7.2716,436,429 - 16,454,756 (+)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Smokl7
306 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039080485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_039080485   ⟹   XP_038936413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,434,845 (+)NCBI
mRatBN7.2716,436,429 - 16,441,384 (+)NCBI
RefSeq Acc Id: XR_005487467
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
mRatBN7.2716,436,429 - 16,454,756 (+)NCBI
RefSeq Acc Id: XR_010053586
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053587
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053588
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053589
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053590
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053591
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053592
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053593
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053594
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053595
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053596
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053597
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
RefSeq Acc Id: XR_010053598
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8717,429,275 - 17,449,026 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038936413 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081534.1
  ENSRNOP00000083151.1
  ENSRNOP00000090787.1
Reference Protein Sequences
RefSeq Acc Id: XP_038936413   ⟸   XM_039080485
- UniProtKB: A0A8I5ZT61 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34660 BioCyc
Ensembl Genes ENSRNOG00000048230 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000109108.1 UniProtKB/TrEMBL
  ENSRNOT00000118851.1 UniProtKB/TrEMBL
  ENSRNOT00000119608.1 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene LOC120093780 ENTREZGENE
PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE UniProtKB/TrEMBL
  SPERM MOTILITY KINASE 3A UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PhenoGen Smokl7 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048230 RatGTEx
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Protein kinase-like (PK-like) UniProtKB/TrEMBL
UniProt A0A8I5ZT61 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Smokl7  sperm motility kinase like 7  Smokl2  sperm motility kinase like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Smokl2  sperm motility kinase like 2  LOC120093780  putative sperm motility kinase W  Symbol and Name Changed 1299863 APPROVED
2021-01-26 LOC120093780  putative sperm motility kinase W      Symbol and Name status set to provisional 70820 PROVISIONAL