Tshb (thyroid stimulating hormone subunit beta) - Rat Genome Database

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Gene: Tshb (thyroid stimulating hormone subunit beta) Rattus norvegicus
Analyze
Symbol: Tshb
Name: thyroid stimulating hormone subunit beta
RGD ID: 3910
Description: Predicted to enable hormone activity. Involved in response to calcium ion; response to estrogen; and response to vitamin A. Predicted to be active in cytoplasm and extracellular space. Human ortholog(s) of this gene implicated in congenital nongoitrous hypothyroidism 4 and hypothyroidism. Orthologous to human TSHB (thyroid stimulating hormone subunit beta); PARTICIPATES IN autoimmune thyroiditis pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: thyroid stimulating hormone beta subunit; thyroid stimulating hormone, beta; thyroid stimulating hormone, beta subunit; thyroid-stimulating hormone subunit beta; thyrotropin beta chain; thyrotropin subunit beta; TSH-B; TSH-beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82192,913,171 - 192,918,054 (-)NCBIGRCr8
mRatBN7.22190,224,676 - 190,229,559 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2190,224,676 - 190,229,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2197,842,312 - 197,847,195 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02195,706,354 - 195,711,234 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02190,532,005 - 190,536,888 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02205,207,799 - 205,215,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2205,207,799 - 205,212,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02224,638,392 - 224,643,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,908,308 - 197,913,186 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12197,871,064 - 197,875,940 (-)NCBI
Celera2182,644,695 - 182,649,578 (-)NCBICelera
RH 3.4 Map21301.7RGD
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRathyperglycemia  ISOTSHB (Homo sapiens)1624160protein:increased expression:serumRGD 
TshbRathypothyroidism  ISOTSHB (Homo sapiens)737692DNA:nonsense mutation:exon:94G>T (p.E11X) (human)RGD 
TshbRatsevere acute respiratory syndrome  ISOTSHB (Homo sapiens)28711759protein:decreased expression:adenohypophysis (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRatcongenital hypothyroidism  ISOTSHB (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital hypothyroidismClinVarPMID:25741868 and PMID:28492532
TshbRatcongenital nongoitrous hypothyroidism 4  ISOTSHB (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11297590 more ...
TshbRatgenetic disease  ISOTSHB (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
TshbRathereditary spastic paraplegia 47  ISOTSHB (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 47ClinVarPMID:22290197 more ...
TshbRathypothyroidism  ISOTSHB (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11297590 more ...
TshbRatIsolated Thyrotropin Deficiency  ISOTSHB (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11297590 more ...
TshbRatRASopathy  ISOTSHB (Homo sapiens)8554872ClinVar Annotator: match by term: RASopathyClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRatbipolar disorder  ISOTSHB (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:6455462
TshbRatComa  ISOTSHB (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24729111
TshbRatGraves' disease  ISOTSHB (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:33132244
TshbRatHypothermia  ISOTSHB (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:6350720
TshbRathypothyroidism  ISOTSHB (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18031379 and PMID:24729111
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
TshbRatcongenital nongoitrous hypothyroidism 4  ISOTSHB (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
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Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRat15-deoxy-Delta(12,14)-prostaglandin J2 multiple interactionsISOTSHB (Homo sapiens)648046415-deoxy-delta(12 and 14)-prostaglandin J2 promotes the reaction [TSHB protein results in increased expression of TG protein]CTDPMID:11078701
TshbRat17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with bisphenol A] results in increased expression of TSHB mRNA more ...CTDPMID:16570238 more ...
TshbRat17beta-estradiol increases secretionEXP 6480464Estradiol results in increased secretion of TSHB proteinCTDPMID:29305326
TshbRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of TSHB proteinCTDPMID:32798586
TshbRat17beta-estradiol multiple interactionsISOTSHB (Homo sapiens)6480464Estradiol inhibits the reaction [[TSHB protein results in increased activity of TSHR protein] which results in increased abundance of Cyclic AMP]CTDPMID:19766106
TshbRat17beta-estradiol 3-benzoate increases expressionEXP 6480464estradiol 3-benzoate results in increased expression of TSHB proteinCTDPMID:16570238
TshbRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:24878560
TshbRat2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISOTshb (Mus musculus)6480464[Triiodothyronine co-treated with 2 more ...CTDPMID:27420076
TshbRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOTshb (Mus musculus)64804642 more ...CTDPMID:27420076
TshbRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOTshb (Mus musculus)64804642 more ...CTDPMID:27420076
TshbRat2,2',4,5-tetrachlorobiphenyl multiple interactionsISOTSHB (Homo sapiens)64804642 more ...CTDPMID:19750101
TshbRat2,3',4,4',5-Pentachlorobiphenyl multiple interactionsISOTSHB (Homo sapiens)64804642 more ...CTDPMID:19750101
TshbRat2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:36450500
TshbRat2,3,4,3',4'-Pentachlorobiphenyl multiple interactionsISOTSHB (Homo sapiens)64804642 more ...CTDPMID:19750101
TshbRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of TSHB proteinCTDPMID:11836014
TshbRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTshb (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of TSHB mRNACTDPMID:24793433
TshbRat2,4-Diaminoanisole increases expressionEXP 64804644-methoxy-3-phenylenediamine results in increased expression of TSHB proteinCTDPMID:2462517 and PMID:2731155
TshbRat2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile multiple interactionsISOTSHB (Homo sapiens)6480464Verapamil inhibits the reaction [TRH protein results in increased secretion of TSHB protein]CTDPMID:7851873
TshbRat2-acetamidofluorene multiple interactionsISOTshb (Mus musculus)6480464TRP53 protein modified form affects the reaction [2-Acetylaminofluorene results in increased expression of TSHB mRNA]CTDPMID:17317680
TshbRat3',5'-cyclic AMP increases abundanceISOTSHB (Homo sapiens)6480464TSHB protein results in increased abundance of Cyclic AMPCTDPMID:21072367

1 to 20 of 216 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRatG protein-coupled receptor signaling pathway involved_inIBAFB:FBgn0063368 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
TshbRatresponse to calcium ion  IEP 1624158 RGD 
TshbRatresponse to estrogen  IEP 1624126 RGD 
TshbRatresponse to vitamin A  IEP 1624303 RGD 

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRatcytoplasm is_active_inIBAMGI:95582 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
TshbRatcytoplasm located_inISOTshb (Mus musculus)1624291 PMID:16806148RGDPMID:16806148
TshbRatextracellular region located_inIEAInterPro:IPR001545 and InterPro:IPR0182451600115GO_REF:0000002InterProGO_REF:0000002
TshbRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
TshbRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
TshbRatextracellular space is_active_inIBAPANTHER:PTN000162063 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRathormone activity  TAS 729979 RGD 
TshbRathormone activity enablesIEAInterPro:IPR001545 and InterPro:IPR0182451600115GO_REF:0000002InterProGO_REF:0000002
TshbRathormone activity enablesIEAUniProtKB-KW:KW-03721600115GO_REF:0000043UniProtGO_REF:0000043

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TshbRatautoimmune thyroiditis pathway  IEA 6907045 KEGGrno:05320

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#
Reference Title
Reference Citation
1. Vitamin A repletion in rats with concurrent vitamin A and iodine deficiency affects pituitary TSHbeta gene expression and reduces thyroid hyperstimulation and thyroid size. Biebinger R, etal., J Nutr. 2007 Mar;137(3):573-7.
2. Chronic treatment with low doses of estradiol affects pituitary and thyroid function in young and middle-aged ovariectomized rats. Bottner M and Wuttke W, Biogerontology. 2005;6(4):261-9.
3. Isolation and characterization of the rat thyrotropin beta-subunit gene. Differential regulation of two transcriptional start sites by thyroid hormone. Carr FE, etal., J Biol Chem 1987 Jan 25;262(3):981-7.
4. Evidence for a single rat thyrotropin-beta-subunit gene: thyroidectomy increases its mRNA. Chin WW, etal., Biochem Biophys Res Commun 1985 May 16;128(3):1152-8.
5. Thyroid hormone decreases thyrotropin subunit mRNA levels in rat anterior pituitary. Croyle ML and Maurer RA, DNA 1984 Jun;3(3):231-6.
6. Analysis of the organization and nucleotide sequence of the chromosomal gene for the beta-subunit of rat thyrotropin. Croyle ML, etal., DNA 1986 Aug;5(4):299-304.
7. Familial hypothyroidism caused by a nonsense mutation in the thyroid-stimulating hormone beta-subunit gene. Dacou-Voutetakis C, etal., Am J Hum Genet 1990 May;46(5):988-93.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. beta-Endorphin and some hormonal levels in children with acute stress hyperglycaemia. Gunoz H, etal., Diabetes Res Clin Pract. 1994 Jun;24(2):97-101.
11. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
15. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
16. GOA pipeline RGD automated data pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Comprehensive gene review and curation RGD comprehensive gene curation
20. Immunoreactive TSH cells in the pituitary of female middle-aged rats after treatment with estradiol or calcium. Sekulic M, etal., Acta Histochem. 1998 Apr;100(2):185-91.
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PMID:2484718   PMID:2824501   PMID:16806148   PMID:16910874   PMID:17927662   PMID:18437010   PMID:21078364  



Tshb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82192,913,171 - 192,918,054 (-)NCBIGRCr8
mRatBN7.22190,224,676 - 190,229,559 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2190,224,676 - 190,229,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2197,842,312 - 197,847,195 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02195,706,354 - 195,711,234 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02190,532,005 - 190,536,888 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02205,207,799 - 205,215,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2205,207,799 - 205,212,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02224,638,392 - 224,643,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,908,308 - 197,913,186 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12197,871,064 - 197,875,940 (-)NCBI
Celera2182,644,695 - 182,649,578 (-)NCBICelera
RH 3.4 Map21301.7RGD
Cytogenetic Map2q34NCBI
TSHB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381115,029,826 - 115,034,309 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1115,029,826 - 115,034,302 (+)EnsemblGRCh38hg38GRCh38
GRCh371115,572,447 - 115,576,930 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361115,373,938 - 115,378,464 (+)NCBINCBI36Build 36hg18NCBI36
Build 341115,284,456 - 115,288,983NCBI
Celera1113,801,633 - 113,806,160 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1113,430,739 - 113,435,225 (+)NCBIHuRef
CHM1_11115,687,686 - 115,692,176 (+)NCBICHM1_1
T2T-CHM13v2.01115,041,260 - 115,045,748 (+)NCBIT2T-CHM13v2.0
Tshb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393102,684,621 - 102,718,175 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3102,682,781 - 102,690,034 (-)EnsemblGRCm39 Ensembl
GRCm383102,777,398 - 102,789,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3102,775,465 - 102,782,718 (-)EnsemblGRCm38mm10GRCm38
MGSCv373102,581,321 - 102,586,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363102,906,459 - 102,911,775 (-)NCBIMGSCv36mm8
Celera3104,982,812 - 104,987,788 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.25NCBI
Tshb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543518,316,585 - 18,339,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543518,316,585 - 18,339,935 (+)NCBIChiLan1.0ChiLan1.0
TSHB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21107,685,126 - 107,689,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11107,284,277 - 107,288,822 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0187,527,267 - 87,531,813 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,575,546 - 122,580,028 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,575,546 - 122,580,028 (-)Ensemblpanpan1.1panPan2
TSHB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11752,659,137 - 52,685,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1752,681,357 - 52,685,390 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1752,306,371 - 52,332,583 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01753,525,777 - 53,563,370 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1753,559,339 - 53,563,372 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11752,571,137 - 52,597,347 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01752,616,291 - 52,641,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01753,186,781 - 53,212,984 (+)NCBIUU_Cfam_GSD_1.0
Tshb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505814,087,322 - 14,090,893 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936627396,215 - 401,650 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936627399,191 - 404,371 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSHB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4105,553,076 - 105,554,015 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14105,553,070 - 105,558,769 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24115,691,689 - 115,697,380 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSHB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12018,660,683 - 18,665,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2018,657,535 - 18,665,185 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603821,406,905 - 21,411,461 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tshb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477210,737,464 - 10,742,555 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477210,732,527 - 10,742,575 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tshb
14 total Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
2 197908467 197908468 A C snv SS/JrHsdMcwi (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:10
Count of miRNA genes:9
Interacting mature miRNAs:10
Transcripts:ENSRNOT00000022575
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 67 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat

1 to 10 of 67 rows
Tshb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22190,227,786 - 190,228,048 (+)MAPPERmRatBN7.2
Rnor_6.02205,210,909 - 205,211,170NCBIRnor6.0
Rnor_5.02224,641,502 - 224,641,763UniSTSRnor5.0
RGSC_v3.42197,911,414 - 197,911,675UniSTSRGSC3.4
Celera2182,647,806 - 182,648,067UniSTS
Cytogenetic Map2q34UniSTS
RH94521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22190,224,625 - 190,224,783 (+)MAPPERmRatBN7.2
Rnor_6.02205,207,749 - 205,207,906NCBIRnor6.0
Rnor_5.02224,638,342 - 224,638,499UniSTSRnor5.0
RGSC_v3.42197,908,253 - 197,908,410UniSTSRGSC3.4
Celera2182,644,645 - 182,644,802UniSTS
RH 3.4 Map21301.7UniSTS
Cytogenetic Map2q34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 16 43 38 38 8 25 8 6 95 61 24 9 35 30



Ensembl Acc Id: ENSRNOT00000022575   ⟹   ENSRNOP00000022575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2190,224,676 - 190,229,559 (-)Ensembl
Rnor_6.0 Ensembl2205,207,799 - 205,212,681 (-)Ensembl
RefSeq Acc Id: NM_013116   ⟹   NP_037248
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82192,913,171 - 192,918,054 (-)NCBI
mRatBN7.22190,224,676 - 190,229,559 (-)NCBI
Rnor_6.02205,207,799 - 205,212,681 (-)NCBI
Rnor_5.02224,638,392 - 224,643,274 (-)NCBI
RGSC_v3.42197,908,308 - 197,913,186 (-)RGD
Celera2182,644,695 - 182,649,578 (-)NCBI
Sequence:
RefSeq Acc Id: NP_037248   ⟸   NM_013116
- Peptide Label: precursor
- UniProtKB: Q6GTA8 (UniProtKB/Swiss-Prot),   P04652 (UniProtKB/Swiss-Prot),   A0A0F7RQR3 (UniProtKB/TrEMBL),   A6K3J3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022575   ⟸   ENSRNOT00000022575
Name Modeler Protein Id AA Range Protein Structure
AF-P04652-F1-model_v2 AlphaFold P04652 1-138 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:6850012
Promoter ID:EP30070
Type:single initiation site
Name:RN_TSHB_2
Description:Thyroid stimulating hormone-beta, TSHB gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 179; Mammalian thyrotropin beta chain, promoter 2
Alternative Promoters:alternative promoter #2 of 2; 5' exon 1; site 2; major promoter.; see alsoEP30069  
Experiment Methods:Nuclease protection; Primer extension
Regulation:pituitary; (repressed by or weakly expressed in) thyroxine, (induced by or strongly expressed in) TRH
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.42197,913,142 - 197,913,202EPD
RGD ID:6850016
Promoter ID:EP30069
Type:single initiation site
Name:RN_TSHB_1
Description:Thyroid stimulating hormone-beta, TSHB gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 178; Mammalian thyrotropin beta chain, promoter 1
Alternative Promoters:alternative promoter #1 of 2; 5' exon 1; site 1.; see alsoEP30070  
Tissues & Cell Lines:pituitary, constitutive
Experiment Methods:Nuclease protection; Sequencing of a full-length cDNA; Primer extension
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.42197,913,186 - 197,913,246EPD


1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-51832 BioCyc
Ensembl Genes ENSRNOG00000016793 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022575 ENTREZGENE
  ENSRNOT00000022575.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6921292 IMAGE-MGC_LOAD
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot
  Glyco_hormone_CN UniProtKB/Swiss-Prot
  Gonadotropin_bsu UniProtKB/Swiss-Prot
  Gonadotropin_bsu_CS UniProtKB/Swiss-Prot
KEGG Report rno:25653 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72898 IMAGE-MGC_LOAD
NCBI Gene 25653 ENTREZGENE
PANTHER PTHR11515 UniProtKB/Swiss-Prot
  THYROTROPIN SUBUNIT BETA UniProtKB/Swiss-Prot
Pfam Cys_knot UniProtKB/Swiss-Prot
PhenoGen Tshb PhenoGen
PROSITE GLYCO_HORMONE_BETA_1 UniProtKB/Swiss-Prot
  GLYCO_HORMONE_BETA_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016793 RatGTEx
SMART GHB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
UniProt A0A0F7RQR3 ENTREZGENE, UniProtKB/TrEMBL
  A6K3J3 ENTREZGENE, UniProtKB/TrEMBL
  P04652 ENTREZGENE
  Q6GTA8 ENTREZGENE
  TSHB_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6GTA8 UniProtKB/Swiss-Prot
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Tshb  thyroid stimulating hormone subunit beta  Tshb  thyroid stimulating hormone, beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Tshb  thyroid stimulating hormone, beta  Tshb  thyroid stimulating hormone, beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Tshb  Thyroid stimulating hormone, beta subunit      Symbol and Name status set to approved 70586 APPROVED